Ggra3616.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3616.t1
Unique NameGgra3616.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:321487..322314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI30162
PFAMsMMR_HSR1
Max annot lvl4776|Peronosporales
Evalue3.07e-26
EggNOG OGs28ND8@1|root,2QUYQ@2759|Eukaryota,3QFGU@4776|Peronosporales
Description50S ribosome-binding GTPase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3616Ggra3616Gracilaria gracilis GNS1m malegenetig00000850_pilon 321487..322314 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3616.t1.start1Ggra3616.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 321487..321489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3616.t1.CDS1Ggra3616.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 321487..322314 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3616.t1.exon1Ggra3616.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 321487..322314 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3616.t1.stop1Ggra3616.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 322312..322314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3616.t1Ggra3616.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 321487..322314 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3616.t1 ID=Ggra3616.t1|Name=Ggra3616.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp
MHIVMVGNPGVGKSAILNSLIGSPKFSSGLSYGSGKTKMLKTVEERGVKY
SDTPGLGDTKMRETAATEISRAFKNGGDFKLIFVVLTVAARVRPEDLATI
EIVLKAIQRVGIDTKRKYSIIVNMCGPNMLEGLKHKENRAGVEIPFGVGD
KVDHIGYMPFVEGAREANNYMLSADITDRYVSFIDKSPVFRLRANSGLKV
EAQGYKLTRDELQKQLEELYELLEEVKEKKNNPLFWAKLALKLYQDDKIT
NLADLINLVGRRAPFIMDLKLSSST*
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spliced messenger RNA

>Ggra3616.t1 ID=Ggra3616.t1|Name=Ggra3616.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000850_pilon:321487..322314+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATATCGTAATGGTTGGAAACCCGGGGGTTGGCAAATCGGCCATTTT
GAACAGCCTTATCGGTTCACCTAAGTTCTCATCGGGCTTAAGTTACGGTT
CTGGAAAGACAAAAATGCTAAAAACTGTTGAGGAGCGAGGCGTCAAATAC
TCAGATACACCTGGACTGGGGGATACTAAGATGCGGGAAACTGCTGCAAC
TGAGATTTCACGTGCTTTTAAAAACGGGGGAGACTTCAAGCTCATATTTG
TGGTTCTAACGGTCGCCGCCCGAGTTCGACCAGAAGATCTTGCGACAATC
GAAATCGTTTTAAAAGCAATTCAACGCGTGGGCATAGACACAAAGCGCAA
GTACTCTATCATTGTGAATATGTGCGGACCAAACATGTTGGAGGGGCTTA
AGCATAAAGAGAATAGAGCCGGGGTGGAGATTCCATTCGGAGTTGGAGAC
AAGGTAGATCATATCGGATACATGCCATTTGTAGAAGGCGCACGTGAAGC
GAATAACTACATGCTTTCAGCAGATATTACGGACAGATATGTTTCATTTA
TAGACAAATCTCCGGTTTTCCGCCTCAGGGCCAATAGCGGATTGAAGGTT
GAAGCTCAAGGGTACAAGTTAACTAGAGATGAGCTGCAAAAACAGCTTGA
AGAACTGTATGAACTTCTCGAGGAGGTGAAAGAGAAGAAAAACAACCCTT
TGTTCTGGGCGAAATTGGCACTAAAGTTGTATCAGGATGACAAAATAACG
AATCTAGCTGACCTGATCAATTTGGTGGGTAGAAGAGCTCCCTTCATTAT
GGACTTGAAATTAAGTTCGTCTACATAG
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protein sequence of Ggra3616.t1

>Ggra3616.t1 ID=Ggra3616.t1|Name=Ggra3616.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MHIVMVGNPGVGKSAILNSLIGSPKFSSGLSYGSGKTKMLKTVEERGVKY
SDTPGLGDTKMRETAATEISRAFKNGGDFKLIFVVLTVAARVRPEDLATI
EIVLKAIQRVGIDTKRKYSIIVNMCGPNMLEGLKHKENRAGVEIPFGVGD
KVDHIGYMPFVEGAREANNYMLSADITDRYVSFIDKSPVFRLRANSGLKV
EAQGYKLTRDELQKQLEELYELLEEVKEKKNNPLFWAKLALKLYQDDKIT
NLADLINLVGRRAPFIMDLKLSSST*
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mRNA from alignment at tig00000850_pilon:321487..322314+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3616.t1 ID=Ggra3616.t1|Name=Ggra3616.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000850_pilon:321487..322314+ (Gracilaria gracilis GNS1m male)
ATGCATATCGTAATGGTTGGAAACCCGGGGGTTGGCAAATCGGCCATTTT
GAACAGCCTTATCGGTTCACCTAAGTTCTCATCGGGCTTAAGTTACGGTT
CTGGAAAGACAAAAATGCTAAAAACTGTTGAGGAGCGAGGCGTCAAATAC
TCAGATACACCTGGACTGGGGGATACTAAGATGCGGGAAACTGCTGCAAC
TGAGATTTCACGTGCTTTTAAAAACGGGGGAGACTTCAAGCTCATATTTG
TGGTTCTAACGGTCGCCGCCCGAGTTCGACCAGAAGATCTTGCGACAATC
GAAATCGTTTTAAAAGCAATTCAACGCGTGGGCATAGACACAAAGCGCAA
GTACTCTATCATTGTGAATATGTGCGGACCAAACATGTTGGAGGGGCTTA
AGCATAAAGAGAATAGAGCCGGGGTGGAGATTCCATTCGGAGTTGGAGAC
AAGGTAGATCATATCGGATACATGCCATTTGTAGAAGGCGCACGTGAAGC
GAATAACTACATGCTTTCAGCAGATATTACGGACAGATATGTTTCATTTA
TAGACAAATCTCCGGTTTTCCGCCTCAGGGCCAATAGCGGATTGAAGGTT
GAAGCTCAAGGGTACAAGTTAACTAGAGATGAGCTGCAAAAACAGCTTGA
AGAACTGTATGAACTTCTCGAGGAGGTGAAAGAGAAGAAAAACAACCCTT
TGTTCTGGGCGAAATTGGCACTAAAGTTGTATCAGGATGACAAAATAACG
AATCTAGCTGACCTGATCAATTTGGTGGGTAGAAGAGCTCCCTTCATTAT
GGACTTGAAATTAAGTTCGTCTACATAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:321487..322314+

>Ggra3616.t1 ID=Ggra3616.t1|Name=Ggra3616.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000850_pilon:321487..322314+ (Gracilaria gracilis GNS1m male)
ATGCATATCGTAATGGTTGGAAACCCGGGGGTTGGCAAATCGGCCATTTT
GAACAGCCTTATCGGTTCACCTAAGTTCTCATCGGGCTTAAGTTACGGTT
CTGGAAAGACAAAAATGCTAAAAACTGTTGAGGAGCGAGGCGTCAAATAC
TCAGATACACCTGGACTGGGGGATACTAAGATGCGGGAAACTGCTGCAAC
TGAGATTTCACGTGCTTTTAAAAACGGGGGAGACTTCAAGCTCATATTTG
TGGTTCTAACGGTCGCCGCCCGAGTTCGACCAGAAGATCTTGCGACAATC
GAAATCGTTTTAAAAGCAATTCAACGCGTGGGCATAGACACAAAGCGCAA
GTACTCTATCATTGTGAATATGTGCGGACCAAACATGTTGGAGGGGCTTA
AGCATAAAGAGAATAGAGCCGGGGTGGAGATTCCATTCGGAGTTGGAGAC
AAGGTAGATCATATCGGATACATGCCATTTGTAGAAGGCGCACGTGAAGC
GAATAACTACATGCTTTCAGCAGATATTACGGACAGATATGTTTCATTTA
TAGACAAATCTCCGGTTTTCCGCCTCAGGGCCAATAGCGGATTGAAGGTT
GAAGCTCAAGGGTACAAGTTAACTAGAGATGAGCTGCAAAAACAGCTTGA
AGAACTGTATGAACTTCTCGAGGAGGTGAAAGAGAAGAAAAACAACCCTT
TGTTCTGGGCGAAATTGGCACTAAAGTTGTATCAGGATGACAAAATAACG
AATCTAGCTGACCTGATCAATTTGGTGGGTAGAAGAGCTCCCTTCATTAT
GGACTTGAAATTAAGTTCGTCTACATAG
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