Ggra3614.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3614.t1
Unique NameGgra3614.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:295249..296847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3614Ggra3614Gracilaria gracilis GNS1m malegenetig00000850_pilon 295249..296847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3614.t1Ggra3614.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 295249..296847 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3614.t1.stop1Ggra3614.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 295249..295251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3614.t1.CDS1Ggra3614.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 295249..295495 -
Ggra3614.t1.CDS2Ggra3614.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 295614..295985 -
Ggra3614.t1.CDS3Ggra3614.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 296126..296223 -
Ggra3614.t1.CDS4Ggra3614.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000850_pilon 296353..296847 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3614.t1.exon1Ggra3614.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 295249..295495 -
Ggra3614.t1.exon2Ggra3614.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 295614..295985 -
Ggra3614.t1.exon3Ggra3614.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 296126..296223 -
Ggra3614.t1.exon4Ggra3614.t1.exon4Gracilaria gracilis GNS1m maleexontig00000850_pilon 296353..296847 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3614.t1.intron1Ggra3614.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 295496..295613 -
Ggra3614.t1.intron2Ggra3614.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 295986..296125 -
Ggra3614.t1.intron3Ggra3614.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000850_pilon 296224..296352 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3614.t1.start1Ggra3614.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 296845..296847 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3614.t1 ID=Ggra3614.t1|Name=Ggra3614.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=404bp
MEDERYQRRVNDLLDTLYDNFRDPLVPFSPYGHNLFGLMSFPPPYDRIYW
MRNRKRWNDIHEPEGRMRTILNYFFCWHQVEFYDLEASDRQGLYLGLFFM
DEIDWQDFWRVSNLLAVPTPLSVAYHTRQLISAPNDRRAWLTWQILTVEW
AVFVLMSFLDTVKYGNLVRGTEYRAAKVERLLDYIPRINWVDTPGYLCTS
LAPPVLPVGADRNIKFANDSQFQSSLQVEIPAVDEPFLHSSLDPISTTHE
GSSNRKSVLTATDEVPQQSCQNPPLAPDPPERAAPGVNATTVRYEPLFSQ
VEGPPIGIEPSGDLIVLPPATTYETLLTEIGEVRNDLRAALDESANLPSG
ERADDIIRKQTEDTLELSDVEQSDALPANAPQPSAGGCFKRLQRVHHQGP
SAQ*
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spliced messenger RNA

>Ggra3614.t1 ID=Ggra3614.t1|Name=Ggra3614.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000850_pilon:295249..296847- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGATGAAAGGTACCAGCGACGGGTTAATGATCTTCTCGATACCTT
GTACGATAATTTTCGAGATCCTTTGGTGCCATTTTCTCCATACGGTCACA
ATCTTTTCGGTCTAATGAGCTTCCCGCCGCCCTACGATCGCATTTACTGG
ATGAGAAACCGCAAGCGATGGAATGACATTCACGAACCCGAAGGTAGGAT
GAGAACAATCTTGAACTACTTCTTCTGCTGGCATCAGGTCGAATTCTATG
ATTTGGAAGCTTCAGATCGTCAAGGCTTATATCTCGGTTTGTTTTTCATG
GATGAAATCGATTGGCAAGACTTCTGGCGCGTTTCCAACTTGCTCGCCGT
TCCCACTCCTCTTTCGGTAGCGTATCATACTCGGCAGTTGATTTCGGCTC
CTAACGATCGTCGAGCATGGCTCACATGGCAGATACTCACAGTAGAATGG
GCAGTATTCGTGTTAATGTCGTTTTTGGACACTGTGAAGTACGGGAACCT
CGTGCGGGGTACTGAATACCGGGCAGCGAAAGTCGAGCGCCTTCTTGATT
ATATCCCAAGAATCAATTGGGTTGACACGCCCGGCTACCTGTGCACTTCC
TTGGCTCCGCCTGTTTTGCCGGTGGGTGCTGATCGAAACATCAAATTCGC
CAATGACAGCCAGTTTCAGAGTTCTTTGCAGGTTGAAATACCAGCAGTGG
ACGAGCCATTCCTTCACTCTAGTTTGGATCCAATATCCACGACTCATGAG
GGTTCTTCCAATAGAAAGTCTGTTCTGACTGCTACCGATGAAGTACCGCA
ACAGTCTTGTCAGAATCCACCCTTGGCACCTGACCCTCCAGAAAGAGCTG
CACCGGGGGTTAACGCCACCACAGTTCGTTATGAACCACTTTTCTCGCAG
GTTGAAGGTCCGCCTATAGGGATTGAACCGAGTGGAGACTTGATTGTTCT
CCCTCCAGCGACAACATACGAAACTCTGCTCACAGAGATTGGCGAGGTTC
GCAACGATTTGAGGGCAGCACTTGACGAAAGCGCCAATCTTCCTTCGGGC
GAGAGAGCAGACGATATCATCCGGAAGCAAACCGAAGACACATTGGAGCT
CTCAGACGTAGAACAATCCGATGCCCTTCCAGCCAACGCACCCCAGCCGA
GCGCCGGTGGGTGCTTTAAGCGTCTGCAGCGTGTGCACCATCAGGGGCCT
TCCGCCCAGTAG
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protein sequence of Ggra3614.t1

>Ggra3614.t1 ID=Ggra3614.t1|Name=Ggra3614.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=404bp
MEDERYQRRVNDLLDTLYDNFRDPLVPFSPYGHNLFGLMSFPPPYDRIYW
MRNRKRWNDIHEPEGRMRTILNYFFCWHQVEFYDLEASDRQGLYLGLFFM
DEIDWQDFWRVSNLLAVPTPLSVAYHTRQLISAPNDRRAWLTWQILTVEW
AVFVLMSFLDTVKYGNLVRGTEYRAAKVERLLDYIPRINWVDTPGYLCTS
LAPPVLPVGADRNIKFANDSQFQSSLQVEIPAVDEPFLHSSLDPISTTHE
GSSNRKSVLTATDEVPQQSCQNPPLAPDPPERAAPGVNATTVRYEPLFSQ
VEGPPIGIEPSGDLIVLPPATTYETLLTEIGEVRNDLRAALDESANLPSG
ERADDIIRKQTEDTLELSDVEQSDALPANAPQPSAGGCFKRLQRVHHQGP
SAQ*
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mRNA from alignment at tig00000850_pilon:295249..296847-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3614.t1 ID=Ggra3614.t1|Name=Ggra3614.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1599bp|location=Sequence derived from alignment at tig00000850_pilon:295249..296847- (Gracilaria gracilis GNS1m male)
ATGGAGGATGAAAGGTACCAGCGACGGGTTAATGATCTTCTCGATACCTT
GTACGATAATTTTCGAGATCCTTTGGTGCCATTTTCTCCATACGGTCACA
ATCTTTTCGGTCTAATGAGCTTCCCGCCGCCCTACGATCGCATTTACTGG
ATGAGAAACCGCAAGCGATGGAATGACATTCACGAACCCGAAGGTAGGAT
GAGAACAATCTTGAACTACTTCTTCTGCTGGCATCAGGTCGAATTCTATG
ATTTGGAAGCTTCAGATCGTCAAGGCTTATATCTCGGTTTGTTTTTCATG
GATGAAATCGATTGGCAAGACTTCTGGCGCGTTTCCAACTTGCTCGCCGT
TCCCACTCCTCTTTCGGTAGCGTATCATACTCGGCAGTTGATTTCGGCTC
CTAACGATCGTCGAGCATGGCTCACATGGCAGATACTCACAGTAGAATGG
GCAGTATTCGTGTTAATGTCGTTTTTGGACACTGTGAAGTACGGGGTACG
CTGCAATATAAGGACGGAGGATTAGAGAATATGGAGCGATTCTGAGGACT
GTCTAAGTCCACGGGGGAGACTCGTGCGCCTTCCTAGGATGATAATACTG
TACCTCCTGGGATTGGGTACACAGAACCTCGTGCGGGGTACTGAATACCG
GGCAGCGAAAGTCGAGCGCCTTCTTGATTATATCCCAAGAATCAATTGGG
TTGACACGCCCGGCTACCTGTGGTACGATTACAACTGGATGACGGTAGAT
CTTATTTTGCCTTCTCCGTTAAGCGACACCCCGAAGTTATTCCAAGACGA
TTGGTAGCGAACTACTTTCCACGTGCCAGAGGTTTTGTTTCCGAATGCCT
GACTCCATATAGCACTTCCTTGGCTCCGCCTGTTTTGCCGGTGGGTGCTG
ATCGAAACATCAAATTCGCCAATGACAGCCAGTTTCAGAGTTCTTTGCAG
GTTGAAATACCAGCAGTGGACGAGCCATTCCTTCACTCTAGTTTGGATCC
AATATCCACGACTCATGAGGGTTCTTCCAATAGAAAGTCTGTTCTGACTG
CTACCGATGAAGTACCGCAACAGTCTTGTCAGAATCCACCCTTGGCACCT
GACCCTCCAGAAAGAGCTGCACCGGGGGTTAACGCCACCACAGTTCGTTA
TGAACCACTTTTCTCGCAGGTTGAAGGTCCGCCTATAGGGATTGAACCGA
GTGGAGACTTGATTGTTCTCCCTCCAGCGACAACGTCAGCGTTAGACGCG
TTGGCGAGAGGCGAGAGACTTGCACGCCCATGGTTACCGGGGTCTGTACC
GACTTGGAGATATCACGATAACCGCACGCTCTTGGCTACGGCGCGCATCG
AGATACGAAACTCTGCTCACAGAGATTGGCGAGGTTCGCAACGATTTGAG
GGCAGCACTTGACGAAAGCGCCAATCTTCCTTCGGGCGAGAGAGCAGACG
ATATCATCCGGAAGCAAACCGAAGACACATTGGAGCTCTCAGACGTAGAA
CAATCCGATGCCCTTCCAGCCAACGCACCCCAGCCGAGCGCCGGTGGGTG
CTTTAAGCGTCTGCAGCGTGTGCACCATCAGGGGCCTTCCGCCCAGTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:295249..296847-

>Ggra3614.t1 ID=Ggra3614.t1|Name=Ggra3614.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00000850_pilon:295249..296847- (Gracilaria gracilis GNS1m male)
ATGGAGGATGAAAGGTACCAGCGACGGGTTAATGATCTTCTCGATACCTT
GTACGATAATTTTCGAGATCCTTTGGTGCCATTTTCTCCATACGGTCACA
ATCTTTTCGGTCTAATGAGCTTCCCGCCGCCCTACGATCGCATTTACTGG
ATGAGAAACCGCAAGCGATGGAATGACATTCACGAACCCGAAGGTAGGAT
GAGAACAATCTTGAACTACTTCTTCTGCTGGCATCAGGTCGAATTCTATG
ATTTGGAAGCTTCAGATCGTCAAGGCTTATATCTCGGTTTGTTTTTCATG
GATGAAATCGATTGGCAAGACTTCTGGCGCGTTTCCAACTTGCTCGCCGT
TCCCACTCCTCTTTCGGTAGCGTATCATACTCGGCAGTTGATTTCGGCTC
CTAACGATCGTCGAGCATGGCTCACATGGCAGATACTCACAGTAGAATGG
GCAGTATTCGTGTTAATGTCGTTTTTGGACACTGTGAAGTACGGGAACCT
CGTGCGGGGTACTGAATACCGGGCAGCGAAAGTCGAGCGCCTTCTTGATT
ATATCCCAAGAATCAATTGGGTTGACACGCCCGGCTACCTGTGCACTTCC
TTGGCTCCGCCTGTTTTGCCGGTGGGTGCTGATCGAAACATCAAATTCGC
CAATGACAGCCAGTTTCAGAGTTCTTTGCAGGTTGAAATACCAGCAGTGG
ACGAGCCATTCCTTCACTCTAGTTTGGATCCAATATCCACGACTCATGAG
GGTTCTTCCAATAGAAAGTCTGTTCTGACTGCTACCGATGAAGTACCGCA
ACAGTCTTGTCAGAATCCACCCTTGGCACCTGACCCTCCAGAAAGAGCTG
CACCGGGGGTTAACGCCACCACAGTTCGTTATGAACCACTTTTCTCGCAG
GTTGAAGGTCCGCCTATAGGGATTGAACCGAGTGGAGACTTGATTGTTCT
CCCTCCAGCGACAACATACGAAACTCTGCTCACAGAGATTGGCGAGGTTC
GCAACGATTTGAGGGCAGCACTTGACGAAAGCGCCAATCTTCCTTCGGGC
GAGAGAGCAGACGATATCATCCGGAAGCAAACCGAAGACACATTGGAGCT
CTCAGACGTAGAACAATCCGATGCCCTTCCAGCCAACGCACCCCAGCCGA
GCGCCGGTGGGTGCTTTAAGCGTCTGCAGCGTGTGCACCATCAGGGGCCT
TCCGCCCAGTAG
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