Ggra3612.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3612.t1
Unique NameGgra3612.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:267587..268228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.001G077000.1
PFAMsRRM_1
Max annot lvl35493|Streptophyta
KEGG koko:K12741
KEGG Pathwayko03040,map03040
GOsGO:0000166,GO:0000959,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009451,GO:0009628,GO:0009987,GO:0016070,GO:0016071,GO:0016553,GO:0016554,GO:0016556,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0071704,GO:0080156,GO:0090304,GO:0097159,GO:0097367,GO:1900864,GO:1901265,GO:1901360,GO:1901363
Evalue2.85e-11
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,37SIW@33090|Viridiplantae,3GBC5@35493|Streptophyta
DescriptionGlycine-rich RNA-binding protein
COG categoryA
BRITEko00000,ko00001,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3612Ggra3612Gracilaria gracilis GNS1m malegenetig00000850_pilon 267587..268228 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3612.t1.start1Ggra3612.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 267587..267589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3612.t1.CDS1Ggra3612.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 267587..268228 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3612.t1.exon1Ggra3612.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 267587..268228 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3612.t1.stop1Ggra3612.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 268226..268228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3612.t1Ggra3612.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 267587..268228 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3612.t1 ID=Ggra3612.t1|Name=Ggra3612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MRAPPAAFHGHCHPRQIPLSSPFSTINRCTFPKPQVHKSRHVNGVRSLHA
ARKGRSTSQDEAFSTCTSCGSDEIVSASRILERGSIIVKCRQCGTRFTAT
AKEALTITGTPLIDLAETMKEEEAEKVDPNAVGVKLYISGLPPRVDSAAL
RRAIEEFGEVIESKVVVDRVTGRSRGFGFVTVKGRSTAAAIIDILSDDTR
RLGTRLKVREAIE*
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spliced messenger RNA

>Ggra3612.t1 ID=Ggra3612.t1|Name=Ggra3612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000850_pilon:267587..268228+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGCACCCCCCGCAGCGTTCCATGGTCATTGTCATCCAAGACAAAT
TCCGCTATCTAGTCCCTTTTCAACGATCAATAGGTGCACCTTCCCAAAGC
CGCAAGTTCACAAATCACGCCATGTGAATGGAGTGAGAAGCCTTCATGCT
GCCAGGAAAGGTCGCTCCACTTCTCAGGATGAGGCGTTTTCAACATGCAC
GTCATGTGGCTCGGATGAAATCGTCTCTGCATCCAGAATCCTGGAAAGGG
GAAGTATTATTGTGAAATGCCGTCAATGCGGGACACGCTTCACGGCCACT
GCGAAAGAGGCCTTGACAATCACTGGAACGCCATTAATTGATCTCGCGGA
AACGATGAAAGAAGAAGAGGCCGAAAAAGTTGATCCTAATGCTGTAGGTG
TTAAACTTTACATATCTGGTCTGCCGCCCAGAGTTGATAGCGCAGCCTTG
AGAAGAGCAATTGAGGAGTTTGGGGAAGTTATTGAATCAAAAGTCGTCGT
TGATCGTGTTACAGGTCGTTCAAGAGGTTTCGGATTTGTTACCGTCAAAG
GGAGGTCCACAGCAGCGGCAATCATTGACATCTTAAGCGACGACACAAGG
CGCTTAGGAACTCGACTCAAGGTAAGAGAAGCAATCGAGTAA
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protein sequence of Ggra3612.t1

>Ggra3612.t1 ID=Ggra3612.t1|Name=Ggra3612.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MRAPPAAFHGHCHPRQIPLSSPFSTINRCTFPKPQVHKSRHVNGVRSLHA
ARKGRSTSQDEAFSTCTSCGSDEIVSASRILERGSIIVKCRQCGTRFTAT
AKEALTITGTPLIDLAETMKEEEAEKVDPNAVGVKLYISGLPPRVDSAAL
RRAIEEFGEVIESKVVVDRVTGRSRGFGFVTVKGRSTAAAIIDILSDDTR
RLGTRLKVREAIE*
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mRNA from alignment at tig00000850_pilon:267587..268228+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3612.t1 ID=Ggra3612.t1|Name=Ggra3612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000850_pilon:267587..268228+ (Gracilaria gracilis GNS1m male)
ATGAGAGCACCCCCCGCAGCGTTCCATGGTCATTGTCATCCAAGACAAAT
TCCGCTATCTAGTCCCTTTTCAACGATCAATAGGTGCACCTTCCCAAAGC
CGCAAGTTCACAAATCACGCCATGTGAATGGAGTGAGAAGCCTTCATGCT
GCCAGGAAAGGTCGCTCCACTTCTCAGGATGAGGCGTTTTCAACATGCAC
GTCATGTGGCTCGGATGAAATCGTCTCTGCATCCAGAATCCTGGAAAGGG
GAAGTATTATTGTGAAATGCCGTCAATGCGGGACACGCTTCACGGCCACT
GCGAAAGAGGCCTTGACAATCACTGGAACGCCATTAATTGATCTCGCGGA
AACGATGAAAGAAGAAGAGGCCGAAAAAGTTGATCCTAATGCTGTAGGTG
TTAAACTTTACATATCTGGTCTGCCGCCCAGAGTTGATAGCGCAGCCTTG
AGAAGAGCAATTGAGGAGTTTGGGGAAGTTATTGAATCAAAAGTCGTCGT
TGATCGTGTTACAGGTCGTTCAAGAGGTTTCGGATTTGTTACCGTCAAAG
GGAGGTCCACAGCAGCGGCAATCATTGACATCTTAAGCGACGACACAAGG
CGCTTAGGAACTCGACTCAAGGTAAGAGAAGCAATCGAGTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:267587..268228+

>Ggra3612.t1 ID=Ggra3612.t1|Name=Ggra3612.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000850_pilon:267587..268228+ (Gracilaria gracilis GNS1m male)
ATGAGAGCACCCCCCGCAGCGTTCCATGGTCATTGTCATCCAAGACAAAT
TCCGCTATCTAGTCCCTTTTCAACGATCAATAGGTGCACCTTCCCAAAGC
CGCAAGTTCACAAATCACGCCATGTGAATGGAGTGAGAAGCCTTCATGCT
GCCAGGAAAGGTCGCTCCACTTCTCAGGATGAGGCGTTTTCAACATGCAC
GTCATGTGGCTCGGATGAAATCGTCTCTGCATCCAGAATCCTGGAAAGGG
GAAGTATTATTGTGAAATGCCGTCAATGCGGGACACGCTTCACGGCCACT
GCGAAAGAGGCCTTGACAATCACTGGAACGCCATTAATTGATCTCGCGGA
AACGATGAAAGAAGAAGAGGCCGAAAAAGTTGATCCTAATGCTGTAGGTG
TTAAACTTTACATATCTGGTCTGCCGCCCAGAGTTGATAGCGCAGCCTTG
AGAAGAGCAATTGAGGAGTTTGGGGAAGTTATTGAATCAAAAGTCGTCGT
TGATCGTGTTACAGGTCGTTCAAGAGGTTTCGGATTTGTTACCGTCAAAG
GGAGGTCCACAGCAGCGGCAATCATTGACATCTTAAGCGACGACACAAGG
CGCTTAGGAACTCGACTCAAGGTAAGAGAAGCAATCGAGTAA
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