Ggra3608.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3608.t1
Unique NameGgra3608.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:255822..256794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002502175.1
PFAMsPkinase_Tyr
Max annot lvl3041|Chlorophyta
Evalue1.24e-45
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota,37N3E@33090|Viridiplantae,34GPM@3041|Chlorophyta
DescriptionProtein tyrosine kinase
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3608Ggra3608Gracilaria gracilis GNS1m malegenetig00000850_pilon 255822..256794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3608.t1Ggra3608.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 255822..256794 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3608.t1.start1Ggra3608.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 255822..255824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3608.t1.CDS1Ggra3608.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 255822..256358 +
Ggra3608.t1.CDS2Ggra3608.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 256447..256794 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3608.t1.exon1Ggra3608.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 255822..256358 +
Ggra3608.t1.exon2Ggra3608.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 256447..256794 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3608.t1.intron1Ggra3608.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 256359..256446 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3608.t1.stop1Ggra3608.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 256792..256794 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3608.t1 ID=Ggra3608.t1|Name=Ggra3608.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MNSLCVPLQVYSAADFKDWKVIAEGTTARVSRASLHGLQVAVKTLKPLNE
IEEPLTREHAVADFENELKINAQLRHPNIMLFIGCIRSKKLESLIFEFCD
SGRLNCSQYGPSRIQKGLVICSGVARALCFAHGLNIIHRDVKPSQILLHG
EVPKLGDWGLATYATSEGCTTGETGTWEFMAPEVIRHEKYSLPADVYSFG
MLMYCIVSGVDYPYMEKFLTPAQAAAGVVKHGLRPTLSSQIPKVVSHIIT
SCWAADPDARPSMKQVIGMLEKAEGFCAPKTTSASGSWSTWIWG*
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spliced messenger RNA

>Ggra3608.t1 ID=Ggra3608.t1|Name=Ggra3608.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000850_pilon:255822..256794+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCTTGTGCGTTCCGTTGCAAGTGTATTCAGCGGCAGATTTTAA
GGATTGGAAGGTCATTGCAGAAGGTACAACAGCGCGTGTGTCTCGAGCTT
CTCTTCACGGCCTGCAAGTAGCAGTGAAGACGCTAAAACCTCTTAATGAA
ATAGAGGAACCATTAACGCGGGAACATGCTGTGGCTGATTTTGAGAACGA
GCTGAAGATAAATGCTCAGCTTCGTCATCCTAATATCATGCTGTTCATTG
GTTGTATTAGATCAAAGAAGCTTGAAAGTCTCATCTTTGAGTTCTGCGAT
AGTGGCAGACTAAACTGCTCGCAATATGGTCCGTCAAGAATTCAAAAGGG
ATTGGTAATCTGTTCAGGAGTAGCCCGAGCATTGTGCTTTGCACATGGCC
TTAACATAATCCATCGGGACGTGAAACCCAGTCAGATCCTGTTGCATGGC
GAAGTGCCGAAGCTTGGAGACTGGGGATTGGCAACGTACGCCACCTCAGA
AGGCTGCACAACCGGTGAAACAGGCACATGGGAGTTCATGGCCCCCGAGG
TCATTCGCCACGAGAAGTACAGTTTGCCTGCCGACGTATACTCCTTTGGA
ATGTTGATGTATTGCATCGTAAGTGGAGTGGACTACCCGTACATGGAAAA
GTTTCTGACTCCAGCACAAGCAGCGGCAGGCGTAGTCAAGCATGGTTTGC
GACCGACCCTTAGCTCTCAAATTCCAAAAGTCGTATCCCACATCATCACA
AGCTGCTGGGCCGCAGATCCGGACGCCCGACCATCTATGAAACAAGTAAT
AGGTATGCTCGAAAAAGCAGAGGGGTTCTGTGCTCCGAAGACTACATCTG
CTTCGGGCAGCTGGTCGACATGGATATGGGGATAG
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protein sequence of Ggra3608.t1

>Ggra3608.t1 ID=Ggra3608.t1|Name=Ggra3608.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MNSLCVPLQVYSAADFKDWKVIAEGTTARVSRASLHGLQVAVKTLKPLNE
IEEPLTREHAVADFENELKINAQLRHPNIMLFIGCIRSKKLESLIFEFCD
SGRLNCSQYGPSRIQKGLVICSGVARALCFAHGLNIIHRDVKPSQILLHG
EVPKLGDWGLATYATSEGCTTGETGTWEFMAPEVIRHEKYSLPADVYSFG
MLMYCIVSGVDYPYMEKFLTPAQAAAGVVKHGLRPTLSSQIPKVVSHIIT
SCWAADPDARPSMKQVIGMLEKAEGFCAPKTTSASGSWSTWIWG*
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mRNA from alignment at tig00000850_pilon:255822..256794+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3608.t1 ID=Ggra3608.t1|Name=Ggra3608.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=973bp|location=Sequence derived from alignment at tig00000850_pilon:255822..256794+ (Gracilaria gracilis GNS1m male)
ATGAACTCCTTGTGCGTTCCGTTGCAAGTGTATTCAGCGGCAGATTTTAA
GGATTGGAAGGTCATTGCAGAAGGTACAACAGCGCGTGTGTCTCGAGCTT
CTCTTCACGGCCTGCAAGTAGCAGTGAAGACGCTAAAACCTCTTAATGAA
ATAGAGGAACCATTAACGCGGGAACATGCTGTGGCTGATTTTGAGAACGA
GCTGAAGATAAATGCTCAGCTTCGTCATCCTAATATCATGCTGTTCATTG
GTTGTATTAGATCAAAGAAGCTTGAAAGTCTCATCTTTGAGTTCTGCGAT
AGTGGCAGACTAAACTGCTCGCAATATGGTCCGTCAAGAATTCAAAAGGG
ATTGGTAATCTGTTCAGGAGTAGCCCGAGCATTGTGCTTTGCACATGGCC
TTAACATAATCCATCGGGACGTGAAACCCAGTCAGATCCTGTTGCATGGC
GAAGTGCCGAAGCTTGGAGACTGGGGATTGGCAACGTACGCCACCTCAGA
AGGCTGCACAACCGGTGAAACAGGCACATGGGAGTTCGTAAGTTACAGCA
CACCACCCCATAACCGTCAAAGTCGCAACAGTGGCGTACGACCAGTTCTG
ACATTTCTAACGAACTTATCGCCAGATGGCCCCCGAGGTCATTCGCCACG
AGAAGTACAGTTTGCCTGCCGACGTATACTCCTTTGGAATGTTGATGTAT
TGCATCGTAAGTGGAGTGGACTACCCGTACATGGAAAAGTTTCTGACTCC
AGCACAAGCAGCGGCAGGCGTAGTCAAGCATGGTTTGCGACCGACCCTTA
GCTCTCAAATTCCAAAAGTCGTATCCCACATCATCACAAGCTGCTGGGCC
GCAGATCCGGACGCCCGACCATCTATGAAACAAGTAATAGGTATGCTCGA
AAAAGCAGAGGGGTTCTGTGCTCCGAAGACTACATCTGCTTCGGGCAGCT
GGTCGACATGGATATGGGGATAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:255822..256794+

>Ggra3608.t1 ID=Ggra3608.t1|Name=Ggra3608.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000850_pilon:255822..256794+ (Gracilaria gracilis GNS1m male)
ATGAACTCCTTGTGCGTTCCGTTGCAAGTGTATTCAGCGGCAGATTTTAA
GGATTGGAAGGTCATTGCAGAAGGTACAACAGCGCGTGTGTCTCGAGCTT
CTCTTCACGGCCTGCAAGTAGCAGTGAAGACGCTAAAACCTCTTAATGAA
ATAGAGGAACCATTAACGCGGGAACATGCTGTGGCTGATTTTGAGAACGA
GCTGAAGATAAATGCTCAGCTTCGTCATCCTAATATCATGCTGTTCATTG
GTTGTATTAGATCAAAGAAGCTTGAAAGTCTCATCTTTGAGTTCTGCGAT
AGTGGCAGACTAAACTGCTCGCAATATGGTCCGTCAAGAATTCAAAAGGG
ATTGGTAATCTGTTCAGGAGTAGCCCGAGCATTGTGCTTTGCACATGGCC
TTAACATAATCCATCGGGACGTGAAACCCAGTCAGATCCTGTTGCATGGC
GAAGTGCCGAAGCTTGGAGACTGGGGATTGGCAACGTACGCCACCTCAGA
AGGCTGCACAACCGGTGAAACAGGCACATGGGAGTTCATGGCCCCCGAGG
TCATTCGCCACGAGAAGTACAGTTTGCCTGCCGACGTATACTCCTTTGGA
ATGTTGATGTATTGCATCGTAAGTGGAGTGGACTACCCGTACATGGAAAA
GTTTCTGACTCCAGCACAAGCAGCGGCAGGCGTAGTCAAGCATGGTTTGC
GACCGACCCTTAGCTCTCAAATTCCAAAAGTCGTATCCCACATCATCACA
AGCTGCTGGGCCGCAGATCCGGACGCCCGACCATCTATGAAACAAGTAAT
AGGTATGCTCGAAAAAGCAGAGGGGTTCTGTGCTCCGAAGACTACATCTG
CTTCGGGCAGCTGGTCGACATGGATATGGGGATAG
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