Ggra3607.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3607.t1
Unique NameGgra3607.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:252902..254170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue2.14e-18
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3607Ggra3607Gracilaria gracilis GNS1m malegenetig00000850_pilon 252902..254170 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3607.t1.start1Ggra3607.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 252902..252904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3607.t1.CDS1Ggra3607.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 252902..254170 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3607.t1.exon1Ggra3607.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 252902..254170 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3607.t1.stop1Ggra3607.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 254168..254170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3607.t1Ggra3607.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 252902..254170 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3607.t1 ID=Ggra3607.t1|Name=Ggra3607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp
MSDLQETCTFVERELHTSFRLDFLRTEAEELSGPHYVPALLIFVPRGDIV
EAPSSYKWVPQKDVGSILIFPIKESIVKFMKQYKTLGLNVHSESLRPYSR
ASWLSEASVWLKDNVKRYASTNVTSIEKVTTGMSGCVLRAETEARSVFYM
KAVVPSEHDEVIVACALCRIMPNSFPKPLDVDMRRRWMLMEEYGSVIDET
EISKSGNTGLRRQILEEWAGIQEASLEVIGELERSGVPLLDAGEIKQRLE
EMVRDPDWYEAQITEIRRKALREYEEEQYKLMFLSYAGSVLNEVSAFRVP
LTLVHGDLQPVNVLRKGIDDFIFFDFEATSISFPFLDAIDFTFSCSGYRD
VTFDELGFYVERWKKYESVERLKRMFDLLREVYYFISTLKQYTCWKKSEE
SEKRLFFREMGSPVSERVFERL*
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spliced messenger RNA

>Ggra3607.t1 ID=Ggra3607.t1|Name=Ggra3607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000850_pilon:252902..254170+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGATCTCCAGGAGACATGTACGTTTGTCGAGAGGGAGCTCCATAC
TTCTTTCCGCTTGGATTTTTTACGTACCGAAGCGGAAGAGTTAAGTGGCC
CGCACTATGTGCCTGCCCTTCTCATATTTGTCCCACGCGGTGACATCGTG
GAAGCCCCCAGTTCATACAAGTGGGTGCCTCAAAAAGATGTAGGCAGCAT
ATTGATTTTCCCAATCAAGGAGTCAATCGTTAAATTCATGAAGCAGTACA
AAACCCTCGGTCTAAACGTACATTCCGAATCTTTGCGACCGTACTCCCGA
GCGAGTTGGCTTTCCGAAGCCTCAGTTTGGCTGAAGGATAATGTCAAACG
TTATGCCAGTACCAATGTCACGAGCATCGAGAAGGTTACTACTGGAATGA
GCGGATGCGTGCTTCGTGCAGAAACTGAAGCTCGCTCCGTGTTCTATATG
AAGGCGGTGGTTCCCTCGGAACATGATGAAGTAATCGTAGCATGCGCCCT
TTGTAGAATAATGCCAAATAGTTTTCCAAAGCCTCTCGATGTTGATATGA
GAAGACGCTGGATGCTCATGGAGGAATACGGCTCGGTCATAGATGAAACT
GAAATTTCGAAAAGCGGTAACACGGGGCTCAGGCGCCAGATATTAGAAGA
ATGGGCGGGCATACAAGAAGCATCATTGGAAGTGATTGGTGAGCTCGAAA
GGTCAGGGGTACCTCTGCTGGATGCCGGGGAAATCAAGCAGAGGCTCGAG
GAAATGGTTCGAGATCCCGATTGGTATGAAGCACAGATCACGGAAATTAG
ACGAAAAGCTCTGAGAGAATATGAAGAAGAGCAATACAAGCTTATGTTTC
TGTCGTATGCAGGAAGCGTGCTCAACGAAGTATCTGCTTTTCGTGTACCA
CTTACTCTCGTACATGGAGATCTTCAGCCGGTTAACGTATTGAGGAAAGG
TATTGATGATTTCATATTCTTTGATTTTGAAGCGACCTCTATTAGCTTCC
CGTTCCTAGATGCGATTGACTTCACATTCAGCTGCAGTGGATATCGGGAT
GTAACGTTCGATGAACTGGGATTCTACGTTGAACGATGGAAAAAGTACGA
AAGTGTTGAACGATTGAAAAGGATGTTTGATCTTCTTCGTGAAGTATACT
ACTTCATTAGCACTTTGAAGCAATACACTTGTTGGAAGAAGTCGGAGGAG
AGCGAAAAACGCCTTTTCTTCAGGGAGATGGGATCTCCAGTGTCCGAACG
GGTTTTCGAGAGATTGTAG
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protein sequence of Ggra3607.t1

>Ggra3607.t1 ID=Ggra3607.t1|Name=Ggra3607.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MSDLQETCTFVERELHTSFRLDFLRTEAEELSGPHYVPALLIFVPRGDIV
EAPSSYKWVPQKDVGSILIFPIKESIVKFMKQYKTLGLNVHSESLRPYSR
ASWLSEASVWLKDNVKRYASTNVTSIEKVTTGMSGCVLRAETEARSVFYM
KAVVPSEHDEVIVACALCRIMPNSFPKPLDVDMRRRWMLMEEYGSVIDET
EISKSGNTGLRRQILEEWAGIQEASLEVIGELERSGVPLLDAGEIKQRLE
EMVRDPDWYEAQITEIRRKALREYEEEQYKLMFLSYAGSVLNEVSAFRVP
LTLVHGDLQPVNVLRKGIDDFIFFDFEATSISFPFLDAIDFTFSCSGYRD
VTFDELGFYVERWKKYESVERLKRMFDLLREVYYFISTLKQYTCWKKSEE
SEKRLFFREMGSPVSERVFERL*
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mRNA from alignment at tig00000850_pilon:252902..254170+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3607.t1 ID=Ggra3607.t1|Name=Ggra3607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000850_pilon:252902..254170+ (Gracilaria gracilis GNS1m male)
ATGTCAGATCTCCAGGAGACATGTACGTTTGTCGAGAGGGAGCTCCATAC
TTCTTTCCGCTTGGATTTTTTACGTACCGAAGCGGAAGAGTTAAGTGGCC
CGCACTATGTGCCTGCCCTTCTCATATTTGTCCCACGCGGTGACATCGTG
GAAGCCCCCAGTTCATACAAGTGGGTGCCTCAAAAAGATGTAGGCAGCAT
ATTGATTTTCCCAATCAAGGAGTCAATCGTTAAATTCATGAAGCAGTACA
AAACCCTCGGTCTAAACGTACATTCCGAATCTTTGCGACCGTACTCCCGA
GCGAGTTGGCTTTCCGAAGCCTCAGTTTGGCTGAAGGATAATGTCAAACG
TTATGCCAGTACCAATGTCACGAGCATCGAGAAGGTTACTACTGGAATGA
GCGGATGCGTGCTTCGTGCAGAAACTGAAGCTCGCTCCGTGTTCTATATG
AAGGCGGTGGTTCCCTCGGAACATGATGAAGTAATCGTAGCATGCGCCCT
TTGTAGAATAATGCCAAATAGTTTTCCAAAGCCTCTCGATGTTGATATGA
GAAGACGCTGGATGCTCATGGAGGAATACGGCTCGGTCATAGATGAAACT
GAAATTTCGAAAAGCGGTAACACGGGGCTCAGGCGCCAGATATTAGAAGA
ATGGGCGGGCATACAAGAAGCATCATTGGAAGTGATTGGTGAGCTCGAAA
GGTCAGGGGTACCTCTGCTGGATGCCGGGGAAATCAAGCAGAGGCTCGAG
GAAATGGTTCGAGATCCCGATTGGTATGAAGCACAGATCACGGAAATTAG
ACGAAAAGCTCTGAGAGAATATGAAGAAGAGCAATACAAGCTTATGTTTC
TGTCGTATGCAGGAAGCGTGCTCAACGAAGTATCTGCTTTTCGTGTACCA
CTTACTCTCGTACATGGAGATCTTCAGCCGGTTAACGTATTGAGGAAAGG
TATTGATGATTTCATATTCTTTGATTTTGAAGCGACCTCTATTAGCTTCC
CGTTCCTAGATGCGATTGACTTCACATTCAGCTGCAGTGGATATCGGGAT
GTAACGTTCGATGAACTGGGATTCTACGTTGAACGATGGAAAAAGTACGA
AAGTGTTGAACGATTGAAAAGGATGTTTGATCTTCTTCGTGAAGTATACT
ACTTCATTAGCACTTTGAAGCAATACACTTGTTGGAAGAAGTCGGAGGAG
AGCGAAAAACGCCTTTTCTTCAGGGAGATGGGATCTCCAGTGTCCGAACG
GGTTTTCGAGAGATTGTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:252902..254170+

>Ggra3607.t1 ID=Ggra3607.t1|Name=Ggra3607.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000850_pilon:252902..254170+ (Gracilaria gracilis GNS1m male)
ATGTCAGATCTCCAGGAGACATGTACGTTTGTCGAGAGGGAGCTCCATAC
TTCTTTCCGCTTGGATTTTTTACGTACCGAAGCGGAAGAGTTAAGTGGCC
CGCACTATGTGCCTGCCCTTCTCATATTTGTCCCACGCGGTGACATCGTG
GAAGCCCCCAGTTCATACAAGTGGGTGCCTCAAAAAGATGTAGGCAGCAT
ATTGATTTTCCCAATCAAGGAGTCAATCGTTAAATTCATGAAGCAGTACA
AAACCCTCGGTCTAAACGTACATTCCGAATCTTTGCGACCGTACTCCCGA
GCGAGTTGGCTTTCCGAAGCCTCAGTTTGGCTGAAGGATAATGTCAAACG
TTATGCCAGTACCAATGTCACGAGCATCGAGAAGGTTACTACTGGAATGA
GCGGATGCGTGCTTCGTGCAGAAACTGAAGCTCGCTCCGTGTTCTATATG
AAGGCGGTGGTTCCCTCGGAACATGATGAAGTAATCGTAGCATGCGCCCT
TTGTAGAATAATGCCAAATAGTTTTCCAAAGCCTCTCGATGTTGATATGA
GAAGACGCTGGATGCTCATGGAGGAATACGGCTCGGTCATAGATGAAACT
GAAATTTCGAAAAGCGGTAACACGGGGCTCAGGCGCCAGATATTAGAAGA
ATGGGCGGGCATACAAGAAGCATCATTGGAAGTGATTGGTGAGCTCGAAA
GGTCAGGGGTACCTCTGCTGGATGCCGGGGAAATCAAGCAGAGGCTCGAG
GAAATGGTTCGAGATCCCGATTGGTATGAAGCACAGATCACGGAAATTAG
ACGAAAAGCTCTGAGAGAATATGAAGAAGAGCAATACAAGCTTATGTTTC
TGTCGTATGCAGGAAGCGTGCTCAACGAAGTATCTGCTTTTCGTGTACCA
CTTACTCTCGTACATGGAGATCTTCAGCCGGTTAACGTATTGAGGAAAGG
TATTGATGATTTCATATTCTTTGATTTTGAAGCGACCTCTATTAGCTTCC
CGTTCCTAGATGCGATTGACTTCACATTCAGCTGCAGTGGATATCGGGAT
GTAACGTTCGATGAACTGGGATTCTACGTTGAACGATGGAAAAAGTACGA
AAGTGTTGAACGATTGAAAAGGATGTTTGATCTTCTTCGTGAAGTATACT
ACTTCATTAGCACTTTGAAGCAATACACTTGTTGGAAGAAGTCGGAGGAG
AGCGAAAAACGCCTTTTCTTCAGGGAGATGGGATCTCCAGTGTCCGAACG
GGTTTTCGAGAGATTGTAG
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