Ggra3604.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3604.t1
Unique Name	Ggra3604.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	348

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:243726..244769 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004994472.1
PFAMs	DUF1295
Max annot lvl	33154\|Opisthokonta
GOs	GO:0003674,GO:0003824,GO:0006629,GO:0008150,GO:0008152,GO:0008202,GO:0016229,GO:0016491,GO:0044238,GO:0055114,GO:0071704,GO:1901360
Evalue	2.21e-42
EggNOG OGs	COG3752@1\|root,KOG4650@2759\|Eukaryota,38MQB@33154\|Opisthokonta
Description	duf1295 domain protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3604	Ggra3604	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 243726..244769 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3604.t1.start1	Ggra3604.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 243726..243728 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3604.t1.CDS1	Ggra3604.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 243726..244769 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3604.t1.exon1	Ggra3604.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 243726..244769 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3604.t1.stop1	Ggra3604.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 244767..244769 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3604.t1	Ggra3604.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 243726..244769 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:243726..244769+
coding sequence from alignment at tig00000850_pilon:243726..244769+

mRNA sequence

>Ggra3604.t1 ID=Ggra3604.t1|Name=Ggra3604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp
MSAPHHLSQAILTISVASNRVLPELVDNFSLAHLYNTIVALNPVVTAFWA
TVFLIFLQWVLGILTRSYAWNDRFWTFIPMTYALLYALHPVISEDRRTNS
ALDFRLTVMTALVFLWGFRLTYASFIRGYYKPGHLDYRYPWLRANVVKNG
FLFALAHAVLVVGNMTVLLAFGSSPLYIAWIGRGLSPRFTVVDIVAAIGM
AVSILIESIADFQQQAFQNRKAKWMKDSVRSDTGERSLTPEQTAEVKCGF
VQSGLFAWSRHPNYFGEIMTWCFFYLFSISPSSQWVNWTIIGAVLHVVLF
QLTMLISETILMQKYPAYADYRERVSKLIPSPFSEKPAPEVKDSKLE*

spliced messenger RNA

>Ggra3604.t1 ID=Ggra3604.t1|Name=Ggra3604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000850_pilon:243726..244769+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCACCGCATCATCTTTCCCAAGCCATACTTACCATTAGCGTTGC
CTCTAATAGAGTACTACCAGAACTTGTGGACAACTTCAGTTTAGCACATT
TGTATAACACAATCGTGGCTTTGAATCCTGTTGTGACTGCCTTTTGGGCA
ACTGTTTTCCTGATATTTCTTCAGTGGGTCTTGGGTATCTTGACTCGGTC
GTACGCCTGGAATGACCGCTTCTGGACATTCATTCCCATGACGTATGCTC
TCTTGTACGCGTTGCATCCAGTCATTAGCGAGGACCGTCGGACAAACTCG
GCTCTGGACTTCAGACTCACAGTCATGACCGCCTTGGTCTTTCTATGGGG
CTTTCGTCTAACATATGCTTCGTTTATTCGTGGATACTACAAGCCAGGTC
ACTTAGATTATCGCTATCCGTGGCTTCGAGCCAATGTTGTCAAAAATGGG
TTTCTATTCGCTCTTGCACACGCTGTTCTCGTTGTTGGGAATATGACAGT
GCTTTTGGCGTTCGGGTCATCTCCCTTATACATTGCGTGGATAGGTCGAG
GGCTTAGCCCACGGTTCACAGTTGTTGACATCGTCGCGGCAATTGGAATG
GCTGTATCCATCCTTATTGAATCCATCGCAGACTTTCAACAACAGGCTTT
CCAAAACCGCAAAGCAAAATGGATGAAAGATTCTGTGAGGTCGGACACTG
GGGAGCGGAGTTTGACGCCCGAGCAAACTGCTGAGGTGAAATGCGGTTTC
GTGCAGTCCGGATTGTTTGCTTGGAGTCGCCATCCGAACTACTTCGGAGA
AATCATGACTTGGTGTTTCTTCTATTTGTTTTCGATTTCGCCAAGTTCGC
AATGGGTGAACTGGACTATCATCGGTGCAGTATTGCACGTCGTTCTGTTT
CAACTCACAATGCTCATATCAGAGACCATATTGATGCAAAAGTACCCAGC
TTACGCGGATTATAGAGAGCGGGTTTCCAAGCTTATTCCATCTCCTTTCT
CTGAGAAACCTGCACCGGAAGTGAAGGACTCGAAACTTGAATAG

protein sequence of Ggra3604.t1

>Ggra3604.t1 ID=Ggra3604.t1|Name=Ggra3604.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=348bp
MSAPHHLSQAILTISVASNRVLPELVDNFSLAHLYNTIVALNPVVTAFWA
TVFLIFLQWVLGILTRSYAWNDRFWTFIPMTYALLYALHPVISEDRRTNS
ALDFRLTVMTALVFLWGFRLTYASFIRGYYKPGHLDYRYPWLRANVVKNG
FLFALAHAVLVVGNMTVLLAFGSSPLYIAWIGRGLSPRFTVVDIVAAIGM
AVSILIESIADFQQQAFQNRKAKWMKDSVRSDTGERSLTPEQTAEVKCGF
VQSGLFAWSRHPNYFGEIMTWCFFYLFSISPSSQWVNWTIIGAVLHVVLF
QLTMLISETILMQKYPAYADYRERVSKLIPSPFSEKPAPEVKDSKLE*

mRNA from alignment at tig00000850_pilon:243726..244769+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3604.t1 ID=Ggra3604.t1|Name=Ggra3604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000850_pilon:243726..244769+ (Gracilaria gracilis GNS1m male)
ATGAGCGCACCGCATCATCTTTCCCAAGCCATACTTACCATTAGCGTTGC
CTCTAATAGAGTACTACCAGAACTTGTGGACAACTTCAGTTTAGCACATT
TGTATAACACAATCGTGGCTTTGAATCCTGTTGTGACTGCCTTTTGGGCA
ACTGTTTTCCTGATATTTCTTCAGTGGGTCTTGGGTATCTTGACTCGGTC
GTACGCCTGGAATGACCGCTTCTGGACATTCATTCCCATGACGTATGCTC
TCTTGTACGCGTTGCATCCAGTCATTAGCGAGGACCGTCGGACAAACTCG
GCTCTGGACTTCAGACTCACAGTCATGACCGCCTTGGTCTTTCTATGGGG
CTTTCGTCTAACATATGCTTCGTTTATTCGTGGATACTACAAGCCAGGTC
ACTTAGATTATCGCTATCCGTGGCTTCGAGCCAATGTTGTCAAAAATGGG
TTTCTATTCGCTCTTGCACACGCTGTTCTCGTTGTTGGGAATATGACAGT
GCTTTTGGCGTTCGGGTCATCTCCCTTATACATTGCGTGGATAGGTCGAG
GGCTTAGCCCACGGTTCACAGTTGTTGACATCGTCGCGGCAATTGGAATG
GCTGTATCCATCCTTATTGAATCCATCGCAGACTTTCAACAACAGGCTTT
CCAAAACCGCAAAGCAAAATGGATGAAAGATTCTGTGAGGTCGGACACTG
GGGAGCGGAGTTTGACGCCCGAGCAAACTGCTGAGGTGAAATGCGGTTTC
GTGCAGTCCGGATTGTTTGCTTGGAGTCGCCATCCGAACTACTTCGGAGA
AATCATGACTTGGTGTTTCTTCTATTTGTTTTCGATTTCGCCAAGTTCGC
AATGGGTGAACTGGACTATCATCGGTGCAGTATTGCACGTCGTTCTGTTT
CAACTCACAATGCTCATATCAGAGACCATATTGATGCAAAAGTACCCAGC
TTACGCGGATTATAGAGAGCGGGTTTCCAAGCTTATTCCATCTCCTTTCT
CTGAGAAACCTGCACCGGAAGTGAAGGACTCGAAACTTGAATAG

Coding sequence (CDS) from alignment at tig00000850_pilon:243726..244769+

>Ggra3604.t1 ID=Ggra3604.t1|Name=Ggra3604.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00000850_pilon:243726..244769+ (Gracilaria gracilis GNS1m male)
ATGAGCGCACCGCATCATCTTTCCCAAGCCATACTTACCATTAGCGTTGC
CTCTAATAGAGTACTACCAGAACTTGTGGACAACTTCAGTTTAGCACATT
TGTATAACACAATCGTGGCTTTGAATCCTGTTGTGACTGCCTTTTGGGCA
ACTGTTTTCCTGATATTTCTTCAGTGGGTCTTGGGTATCTTGACTCGGTC
GTACGCCTGGAATGACCGCTTCTGGACATTCATTCCCATGACGTATGCTC
TCTTGTACGCGTTGCATCCAGTCATTAGCGAGGACCGTCGGACAAACTCG
GCTCTGGACTTCAGACTCACAGTCATGACCGCCTTGGTCTTTCTATGGGG
CTTTCGTCTAACATATGCTTCGTTTATTCGTGGATACTACAAGCCAGGTC
ACTTAGATTATCGCTATCCGTGGCTTCGAGCCAATGTTGTCAAAAATGGG
TTTCTATTCGCTCTTGCACACGCTGTTCTCGTTGTTGGGAATATGACAGT
GCTTTTGGCGTTCGGGTCATCTCCCTTATACATTGCGTGGATAGGTCGAG
GGCTTAGCCCACGGTTCACAGTTGTTGACATCGTCGCGGCAATTGGAATG
GCTGTATCCATCCTTATTGAATCCATCGCAGACTTTCAACAACAGGCTTT
CCAAAACCGCAAAGCAAAATGGATGAAAGATTCTGTGAGGTCGGACACTG
GGGAGCGGAGTTTGACGCCCGAGCAAACTGCTGAGGTGAAATGCGGTTTC
GTGCAGTCCGGATTGTTTGCTTGGAGTCGCCATCCGAACTACTTCGGAGA
AATCATGACTTGGTGTTTCTTCTATTTGTTTTCGATTTCGCCAAGTTCGC
AATGGGTGAACTGGACTATCATCGGTGCAGTATTGCACGTCGTTCTGTTT
CAACTCACAATGCTCATATCAGAGACCATATTGATGCAAAAGTACCCAGC
TTACGCGGATTATAGAGAGCGGGTTTCCAAGCTTATTCCATCTCCTTTCT
CTGAGAAACCTGCACCGGAAGTGAAGGACTCGAAACTTGAATAG