Ggra3601.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3601.t1
Unique NameGgra3601.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:236161..237318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog215803.DB30_8490
PFAMsFIST,FIST_C
Max annot lvl28221|Deltaproteobacteria
Evalue1.86e-51
EggNOG OGsCOG3287@1|root,COG3287@2|Bacteria,1R474@1224|Proteobacteria,42PVH@68525|delta/epsilon subdivisions,2WMB4@28221|Deltaproteobacteria,2YWFE@29|Myxococcales
DescriptionFIST N domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3601Ggra3601Gracilaria gracilis GNS1m malegenetig00000850_pilon 236161..237318 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3601.t1.start1Ggra3601.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 236161..236163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3601.t1.CDS1Ggra3601.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 236161..237318 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3601.t1.exon1Ggra3601.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 236161..237318 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3601.t1.stop1Ggra3601.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 237316..237318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3601.t1Ggra3601.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 236161..237318 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3601.t1 ID=Ggra3601.t1|Name=Ggra3601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=386bp
MTPTSSASVGASDLPSTAHAVHAALDAALVGTPSPTVALVSHTVRRSAAE
VHALIRARLPAVRVHGATTCGALLCNARALPNGVGVLLLDGAGLRTAACS
LRNCDVREAANRVAARLKRELPRLRSVLLATSPGIEEQVLATFSSLLPGV
SVFGGSAADDTVSAQWSLFSDDGVFSQGLTAVGIEAGVPFGSCLFPPYEK
GEQYATVTKCEGRVIHQLDGNTAAQVLRHWVGHSIDTQSKHGGQVIVECA
GFPLGIERVSGGWIGVHAAEITPEGSVGLFAEVKEGDKLTVMRKLGGSDS
ATAASIGLEHAYKEAMKQGGLTDPKAGVLIYCGGLSIAVGDQLNKSLEPL
KGKAAMLGITAFGEQGHVAGSNLHSNLAVGVALFG*
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spliced messenger RNA

>Ggra3601.t1 ID=Ggra3601.t1|Name=Ggra3601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00000850_pilon:236161..237318+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCCACTTCAAGCGCGTCTGTGGGCGCATCCGACCTGCCGAGCAC
CGCGCACGCCGTGCACGCCGCGTTGGACGCCGCGCTGGTTGGCACGCCGT
CGCCCACCGTGGCGCTGGTGTCGCACACGGTGCGGCGCAGCGCCGCCGAG
GTGCACGCGCTCATTCGCGCGCGCCTGCCAGCCGTGCGCGTGCACGGCGC
CACCACGTGCGGCGCGCTGCTTTGCAACGCGCGCGCGCTGCCCAACGGCG
TGGGCGTGCTGCTTCTGGACGGCGCCGGCTTGCGCACGGCCGCGTGCTCG
CTGCGCAACTGCGACGTGCGCGAGGCGGCCAATCGCGTCGCCGCCCGCCT
CAAGCGCGAGCTGCCGCGGCTGCGCAGCGTGCTGTTGGCCACCTCGCCGG
GCATTGAGGAGCAGGTTTTGGCCACGTTTTCCTCGCTGCTGCCGGGCGTC
AGCGTGTTTGGTGGTTCGGCGGCGGACGATACTGTGTCGGCGCAATGGAG
CCTGTTCTCTGATGATGGCGTGTTCTCTCAAGGATTGACGGCCGTTGGTA
TCGAAGCTGGTGTTCCTTTCGGGTCGTGCCTTTTCCCACCTTATGAAAAG
GGAGAGCAATATGCCACCGTCACAAAATGCGAAGGGCGTGTTATTCATCA
ACTGGATGGCAACACAGCCGCTCAAGTGCTTCGGCACTGGGTGGGTCACA
GCATTGACACACAGTCAAAACATGGCGGACAAGTGATAGTAGAATGTGCC
GGTTTTCCTCTCGGAATCGAAAGAGTTTCTGGTGGGTGGATAGGCGTGCA
CGCCGCCGAAATCACCCCAGAGGGAAGTGTGGGTCTGTTTGCAGAGGTGA
AGGAGGGAGATAAACTCACAGTGATGCGGAAGCTGGGAGGCTCCGATTCT
GCAACCGCAGCTTCGATTGGCTTGGAGCACGCATACAAGGAAGCGATGAA
GCAAGGCGGCTTGACCGACCCAAAGGCGGGAGTTCTAATTTACTGCGGCG
GTCTTAGCATAGCAGTTGGTGACCAACTAAATAAGAGCTTAGAACCACTG
AAAGGAAAGGCTGCAATGCTGGGAATCACAGCGTTCGGAGAGCAGGGGCA
CGTCGCTGGTTCCAATCTGCATTCTAATCTTGCGGTTGGGGTGGCCTTGT
TTGGATAA
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protein sequence of Ggra3601.t1

>Ggra3601.t1 ID=Ggra3601.t1|Name=Ggra3601.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=386bp
MTPTSSASVGASDLPSTAHAVHAALDAALVGTPSPTVALVSHTVRRSAAE
VHALIRARLPAVRVHGATTCGALLCNARALPNGVGVLLLDGAGLRTAACS
LRNCDVREAANRVAARLKRELPRLRSVLLATSPGIEEQVLATFSSLLPGV
SVFGGSAADDTVSAQWSLFSDDGVFSQGLTAVGIEAGVPFGSCLFPPYEK
GEQYATVTKCEGRVIHQLDGNTAAQVLRHWVGHSIDTQSKHGGQVIVECA
GFPLGIERVSGGWIGVHAAEITPEGSVGLFAEVKEGDKLTVMRKLGGSDS
ATAASIGLEHAYKEAMKQGGLTDPKAGVLIYCGGLSIAVGDQLNKSLEPL
KGKAAMLGITAFGEQGHVAGSNLHSNLAVGVALFG*
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mRNA from alignment at tig00000850_pilon:236161..237318+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3601.t1 ID=Ggra3601.t1|Name=Ggra3601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00000850_pilon:236161..237318+ (Gracilaria gracilis GNS1m male)
ATGACGCCCACTTCAAGCGCGTCTGTGGGCGCATCCGACCTGCCGAGCAC
CGCGCACGCCGTGCACGCCGCGTTGGACGCCGCGCTGGTTGGCACGCCGT
CGCCCACCGTGGCGCTGGTGTCGCACACGGTGCGGCGCAGCGCCGCCGAG
GTGCACGCGCTCATTCGCGCGCGCCTGCCAGCCGTGCGCGTGCACGGCGC
CACCACGTGCGGCGCGCTGCTTTGCAACGCGCGCGCGCTGCCCAACGGCG
TGGGCGTGCTGCTTCTGGACGGCGCCGGCTTGCGCACGGCCGCGTGCTCG
CTGCGCAACTGCGACGTGCGCGAGGCGGCCAATCGCGTCGCCGCCCGCCT
CAAGCGCGAGCTGCCGCGGCTGCGCAGCGTGCTGTTGGCCACCTCGCCGG
GCATTGAGGAGCAGGTTTTGGCCACGTTTTCCTCGCTGCTGCCGGGCGTC
AGCGTGTTTGGTGGTTCGGCGGCGGACGATACTGTGTCGGCGCAATGGAG
CCTGTTCTCTGATGATGGCGTGTTCTCTCAAGGATTGACGGCCGTTGGTA
TCGAAGCTGGTGTTCCTTTCGGGTCGTGCCTTTTCCCACCTTATGAAAAG
GGAGAGCAATATGCCACCGTCACAAAATGCGAAGGGCGTGTTATTCATCA
ACTGGATGGCAACACAGCCGCTCAAGTGCTTCGGCACTGGGTGGGTCACA
GCATTGACACACAGTCAAAACATGGCGGACAAGTGATAGTAGAATGTGCC
GGTTTTCCTCTCGGAATCGAAAGAGTTTCTGGTGGGTGGATAGGCGTGCA
CGCCGCCGAAATCACCCCAGAGGGAAGTGTGGGTCTGTTTGCAGAGGTGA
AGGAGGGAGATAAACTCACAGTGATGCGGAAGCTGGGAGGCTCCGATTCT
GCAACCGCAGCTTCGATTGGCTTGGAGCACGCATACAAGGAAGCGATGAA
GCAAGGCGGCTTGACCGACCCAAAGGCGGGAGTTCTAATTTACTGCGGCG
GTCTTAGCATAGCAGTTGGTGACCAACTAAATAAGAGCTTAGAACCACTG
AAAGGAAAGGCTGCAATGCTGGGAATCACAGCGTTCGGAGAGCAGGGGCA
CGTCGCTGGTTCCAATCTGCATTCTAATCTTGCGGTTGGGGTGGCCTTGT
TTGGATAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:236161..237318+

>Ggra3601.t1 ID=Ggra3601.t1|Name=Ggra3601.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1158bp|location=Sequence derived from alignment at tig00000850_pilon:236161..237318+ (Gracilaria gracilis GNS1m male)
ATGACGCCCACTTCAAGCGCGTCTGTGGGCGCATCCGACCTGCCGAGCAC
CGCGCACGCCGTGCACGCCGCGTTGGACGCCGCGCTGGTTGGCACGCCGT
CGCCCACCGTGGCGCTGGTGTCGCACACGGTGCGGCGCAGCGCCGCCGAG
GTGCACGCGCTCATTCGCGCGCGCCTGCCAGCCGTGCGCGTGCACGGCGC
CACCACGTGCGGCGCGCTGCTTTGCAACGCGCGCGCGCTGCCCAACGGCG
TGGGCGTGCTGCTTCTGGACGGCGCCGGCTTGCGCACGGCCGCGTGCTCG
CTGCGCAACTGCGACGTGCGCGAGGCGGCCAATCGCGTCGCCGCCCGCCT
CAAGCGCGAGCTGCCGCGGCTGCGCAGCGTGCTGTTGGCCACCTCGCCGG
GCATTGAGGAGCAGGTTTTGGCCACGTTTTCCTCGCTGCTGCCGGGCGTC
AGCGTGTTTGGTGGTTCGGCGGCGGACGATACTGTGTCGGCGCAATGGAG
CCTGTTCTCTGATGATGGCGTGTTCTCTCAAGGATTGACGGCCGTTGGTA
TCGAAGCTGGTGTTCCTTTCGGGTCGTGCCTTTTCCCACCTTATGAAAAG
GGAGAGCAATATGCCACCGTCACAAAATGCGAAGGGCGTGTTATTCATCA
ACTGGATGGCAACACAGCCGCTCAAGTGCTTCGGCACTGGGTGGGTCACA
GCATTGACACACAGTCAAAACATGGCGGACAAGTGATAGTAGAATGTGCC
GGTTTTCCTCTCGGAATCGAAAGAGTTTCTGGTGGGTGGATAGGCGTGCA
CGCCGCCGAAATCACCCCAGAGGGAAGTGTGGGTCTGTTTGCAGAGGTGA
AGGAGGGAGATAAACTCACAGTGATGCGGAAGCTGGGAGGCTCCGATTCT
GCAACCGCAGCTTCGATTGGCTTGGAGCACGCATACAAGGAAGCGATGAA
GCAAGGCGGCTTGACCGACCCAAAGGCGGGAGTTCTAATTTACTGCGGCG
GTCTTAGCATAGCAGTTGGTGACCAACTAAATAAGAGCTTAGAACCACTG
AAAGGAAAGGCTGCAATGCTGGGAATCACAGCGTTCGGAGAGCAGGGGCA
CGTCGCTGGTTCCAATCTGCATTCTAATCTTGCGGTTGGGGTGGCCTTGT
TTGGATAA
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