Ggra360.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra360.t1
Unique Name	Ggra360.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	593

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000950_pilon	contig	tig00000950_pilon:154303..156081 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra360	Ggra360	Gracilaria gracilis GNS1m male	gene	tig00000950_pilon 154303..156081 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra360.t1.start1	Ggra360.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000950_pilon 154303..154305 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra360.t1.CDS1	Ggra360.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000950_pilon 154303..156081 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra360.t1.exon1	Ggra360.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000950_pilon 154303..156081 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra360.t1.stop1	Ggra360.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000950_pilon 156079..156081 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra360.t1	Ggra360.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000950_pilon 154303..156081 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000950_pilon:154303..156081+
coding sequence from alignment at tig00000950_pilon:154303..156081+

mRNA sequence

>Ggra360.t1 ID=Ggra360.t1|Name=Ggra360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=593bp
MFLWKSTVESLVAIYENEYDGKRHCTHDSISKRGDTADQQLDNREEHCGS
PPLYSRPKQHRRKEIECIARSMWSKLVHHIQGNEAMSSLNPSLPTEYGNV
KGDARFHVAQEVFTRELIGAFEAMESSDGIHSDEEKSKRNGERATISSLE
RLVKEVSEEAQKAREVLLLVTREKCELEYVCEEYEEKRLKTLRMLREARA
ENRGLRNKNVYLGDTVEELEAGVEEVKNAKKAEQVEILQVTHRAEMAELM
AKQASLDCMVLDKQLKSVEGSSELVHKHLEELQRLQDEMKRVLVANANSL
ERCSEHGTLGRLERLLHKSSGLVGRMAASVFGKRNGEDESTDSVRRESAG
RNTVEERVHDEESTPLRDRRPLFSKFFSNPRTRNAGDCQPGILRKITRRL
RGRRGGAHTESTVPVVKAVKFDRSAVIEHSTSDISDENATPGHGDGGARG
ALSVLAGFRHMRSLRSLVVRRLQPCGGDSRTVNIRSRALEALDENLQKLR
KVVDDKQQEVFRLHRELREAVQACNLFEQSVQKEVQKRVEVELSLAGCTF
TTVRESPAMREDCTKDSAGDIDKEEGIGIRDRVSKRWSCSLF*

spliced messenger RNA

>Ggra360.t1 ID=Ggra360.t1|Name=Ggra360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00000950_pilon:154303..156081+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCTTTGGAAGTCGACTGTCGAGAGCCTAGTAGCTATCTACGAGAA
CGAGTATGATGGGAAACGCCACTGTACACATGATAGCATATCTAAAAGGG
GAGATACAGCTGACCAGCAGCTTGACAATAGAGAAGAACATTGTGGTTCC
CCTCCTTTGTATTCGCGCCCGAAACAGCACAGAAGGAAGGAAATCGAGTG
TATAGCACGTTCCATGTGGAGTAAGCTGGTTCATCACATCCAGGGGAATG
AGGCGATGAGCAGCTTGAACCCTTCTTTGCCCACTGAATACGGCAACGTG
AAGGGAGACGCAAGGTTCCACGTTGCTCAGGAGGTGTTCACGCGGGAACT
GATCGGTGCCTTTGAAGCGATGGAGTCGTCGGATGGCATACACAGTGATG
AAGAGAAGAGCAAAAGAAACGGAGAGCGGGCTACAATTAGCTCGCTGGAG
CGTCTTGTGAAAGAAGTATCGGAGGAGGCGCAGAAAGCGAGAGAGGTGCT
GCTCCTTGTGACACGAGAAAAGTGTGAACTGGAGTACGTGTGCGAAGAAT
ATGAAGAGAAGCGTTTGAAGACGTTACGGATGTTGCGAGAGGCGAGGGCA
GAGAACAGAGGACTACGGAACAAGAACGTGTATCTCGGGGACACCGTGGA
AGAACTTGAAGCTGGGGTAGAAGAGGTGAAGAATGCCAAGAAGGCTGAAC
AAGTAGAGATACTGCAAGTTACTCATCGAGCTGAAATGGCGGAGCTGATG
GCAAAACAGGCCTCGCTAGACTGCATGGTGCTAGACAAGCAGCTGAAGTC
CGTCGAGGGTTCTTCCGAGTTGGTCCACAAACATTTGGAGGAATTGCAAA
GGCTGCAAGACGAGATGAAGAGAGTGCTTGTGGCAAACGCTAACAGTTTG
GAAAGGTGCAGTGAGCATGGGACTTTGGGGCGGCTAGAACGGCTTCTGCA
CAAGAGCTCGGGACTCGTGGGGCGTATGGCAGCCTCAGTTTTTGGTAAGC
GTAATGGGGAAGATGAAAGCACCGATAGTGTGAGACGTGAAAGTGCAGGA
CGTAATACTGTGGAGGAACGTGTGCATGATGAAGAATCTACGCCCTTGAG
GGATAGGAGACCATTGTTTTCAAAGTTCTTCTCCAACCCGAGAACGAGGA
ATGCAGGAGACTGTCAGCCAGGAATACTGCGGAAGATAACCAGGCGCCTT
CGTGGTAGAAGAGGTGGGGCGCATACCGAAAGCACGGTTCCTGTTGTCAA
GGCAGTGAAATTCGACCGTTCCGCTGTCATCGAACACAGCACCTCAGACA
TCTCAGACGAAAACGCAACCCCGGGTCATGGGGACGGCGGTGCACGAGGA
GCATTATCAGTTTTAGCAGGTTTTAGACATATGCGGTCTTTGAGGTCACT
TGTTGTGCGTCGGCTCCAACCGTGTGGTGGCGACTCACGCACTGTGAATA
TTCGATCAAGGGCGCTGGAAGCGCTCGATGAGAACCTGCAGAAACTACGG
AAGGTGGTTGATGACAAGCAGCAAGAGGTTTTCCGATTACACCGAGAGCT
GCGAGAGGCTGTACAGGCTTGCAACTTGTTCGAACAAAGTGTCCAGAAAG
AGGTTCAGAAGCGCGTTGAAGTGGAACTGAGTCTGGCTGGGTGTACGTTC
ACAACTGTGAGAGAATCCCCAGCGATGAGAGAGGATTGTACAAAAGATAG
TGCTGGCGATATTGACAAAGAAGAAGGGATCGGGATCCGAGATAGGGTGT
CAAAGCGATGGTCATGTAGCTTGTTTTAG

protein sequence of Ggra360.t1

>Ggra360.t1 ID=Ggra360.t1|Name=Ggra360.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=593bp
MFLWKSTVESLVAIYENEYDGKRHCTHDSISKRGDTADQQLDNREEHCGS
PPLYSRPKQHRRKEIECIARSMWSKLVHHIQGNEAMSSLNPSLPTEYGNV
KGDARFHVAQEVFTRELIGAFEAMESSDGIHSDEEKSKRNGERATISSLE
RLVKEVSEEAQKAREVLLLVTREKCELEYVCEEYEEKRLKTLRMLREARA
ENRGLRNKNVYLGDTVEELEAGVEEVKNAKKAEQVEILQVTHRAEMAELM
AKQASLDCMVLDKQLKSVEGSSELVHKHLEELQRLQDEMKRVLVANANSL
ERCSEHGTLGRLERLLHKSSGLVGRMAASVFGKRNGEDESTDSVRRESAG
RNTVEERVHDEESTPLRDRRPLFSKFFSNPRTRNAGDCQPGILRKITRRL
RGRRGGAHTESTVPVVKAVKFDRSAVIEHSTSDISDENATPGHGDGGARG
ALSVLAGFRHMRSLRSLVVRRLQPCGGDSRTVNIRSRALEALDENLQKLR
KVVDDKQQEVFRLHRELREAVQACNLFEQSVQKEVQKRVEVELSLAGCTF
TTVRESPAMREDCTKDSAGDIDKEEGIGIRDRVSKRWSCSLF*

mRNA from alignment at tig00000950_pilon:154303..156081+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra360.t1 ID=Ggra360.t1|Name=Ggra360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00000950_pilon:154303..156081+ (Gracilaria gracilis GNS1m male)
ATGTTCCTTTGGAAGTCGACTGTCGAGAGCCTAGTAGCTATCTACGAGAA
CGAGTATGATGGGAAACGCCACTGTACACATGATAGCATATCTAAAAGGG
GAGATACAGCTGACCAGCAGCTTGACAATAGAGAAGAACATTGTGGTTCC
CCTCCTTTGTATTCGCGCCCGAAACAGCACAGAAGGAAGGAAATCGAGTG
TATAGCACGTTCCATGTGGAGTAAGCTGGTTCATCACATCCAGGGGAATG
AGGCGATGAGCAGCTTGAACCCTTCTTTGCCCACTGAATACGGCAACGTG
AAGGGAGACGCAAGGTTCCACGTTGCTCAGGAGGTGTTCACGCGGGAACT
GATCGGTGCCTTTGAAGCGATGGAGTCGTCGGATGGCATACACAGTGATG
AAGAGAAGAGCAAAAGAAACGGAGAGCGGGCTACAATTAGCTCGCTGGAG
CGTCTTGTGAAAGAAGTATCGGAGGAGGCGCAGAAAGCGAGAGAGGTGCT
GCTCCTTGTGACACGAGAAAAGTGTGAACTGGAGTACGTGTGCGAAGAAT
ATGAAGAGAAGCGTTTGAAGACGTTACGGATGTTGCGAGAGGCGAGGGCA
GAGAACAGAGGACTACGGAACAAGAACGTGTATCTCGGGGACACCGTGGA
AGAACTTGAAGCTGGGGTAGAAGAGGTGAAGAATGCCAAGAAGGCTGAAC
AAGTAGAGATACTGCAAGTTACTCATCGAGCTGAAATGGCGGAGCTGATG
GCAAAACAGGCCTCGCTAGACTGCATGGTGCTAGACAAGCAGCTGAAGTC
CGTCGAGGGTTCTTCCGAGTTGGTCCACAAACATTTGGAGGAATTGCAAA
GGCTGCAAGACGAGATGAAGAGAGTGCTTGTGGCAAACGCTAACAGTTTG
GAAAGGTGCAGTGAGCATGGGACTTTGGGGCGGCTAGAACGGCTTCTGCA
CAAGAGCTCGGGACTCGTGGGGCGTATGGCAGCCTCAGTTTTTGGTAAGC
GTAATGGGGAAGATGAAAGCACCGATAGTGTGAGACGTGAAAGTGCAGGA
CGTAATACTGTGGAGGAACGTGTGCATGATGAAGAATCTACGCCCTTGAG
GGATAGGAGACCATTGTTTTCAAAGTTCTTCTCCAACCCGAGAACGAGGA
ATGCAGGAGACTGTCAGCCAGGAATACTGCGGAAGATAACCAGGCGCCTT
CGTGGTAGAAGAGGTGGGGCGCATACCGAAAGCACGGTTCCTGTTGTCAA
GGCAGTGAAATTCGACCGTTCCGCTGTCATCGAACACAGCACCTCAGACA
TCTCAGACGAAAACGCAACCCCGGGTCATGGGGACGGCGGTGCACGAGGA
GCATTATCAGTTTTAGCAGGTTTTAGACATATGCGGTCTTTGAGGTCACT
TGTTGTGCGTCGGCTCCAACCGTGTGGTGGCGACTCACGCACTGTGAATA
TTCGATCAAGGGCGCTGGAAGCGCTCGATGAGAACCTGCAGAAACTACGG
AAGGTGGTTGATGACAAGCAGCAAGAGGTTTTCCGATTACACCGAGAGCT
GCGAGAGGCTGTACAGGCTTGCAACTTGTTCGAACAAAGTGTCCAGAAAG
AGGTTCAGAAGCGCGTTGAAGTGGAACTGAGTCTGGCTGGGTGTACGTTC
ACAACTGTGAGAGAATCCCCAGCGATGAGAGAGGATTGTACAAAAGATAG
TGCTGGCGATATTGACAAAGAAGAAGGGATCGGGATCCGAGATAGGGTGT
CAAAGCGATGGTCATGTAGCTTGTTTTAG

Coding sequence (CDS) from alignment at tig00000950_pilon:154303..156081+

>Ggra360.t1 ID=Ggra360.t1|Name=Ggra360.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1779bp|location=Sequence derived from alignment at tig00000950_pilon:154303..156081+ (Gracilaria gracilis GNS1m male)
ATGTTCCTTTGGAAGTCGACTGTCGAGAGCCTAGTAGCTATCTACGAGAA
CGAGTATGATGGGAAACGCCACTGTACACATGATAGCATATCTAAAAGGG
GAGATACAGCTGACCAGCAGCTTGACAATAGAGAAGAACATTGTGGTTCC
CCTCCTTTGTATTCGCGCCCGAAACAGCACAGAAGGAAGGAAATCGAGTG
TATAGCACGTTCCATGTGGAGTAAGCTGGTTCATCACATCCAGGGGAATG
AGGCGATGAGCAGCTTGAACCCTTCTTTGCCCACTGAATACGGCAACGTG
AAGGGAGACGCAAGGTTCCACGTTGCTCAGGAGGTGTTCACGCGGGAACT
GATCGGTGCCTTTGAAGCGATGGAGTCGTCGGATGGCATACACAGTGATG
AAGAGAAGAGCAAAAGAAACGGAGAGCGGGCTACAATTAGCTCGCTGGAG
CGTCTTGTGAAAGAAGTATCGGAGGAGGCGCAGAAAGCGAGAGAGGTGCT
GCTCCTTGTGACACGAGAAAAGTGTGAACTGGAGTACGTGTGCGAAGAAT
ATGAAGAGAAGCGTTTGAAGACGTTACGGATGTTGCGAGAGGCGAGGGCA
GAGAACAGAGGACTACGGAACAAGAACGTGTATCTCGGGGACACCGTGGA
AGAACTTGAAGCTGGGGTAGAAGAGGTGAAGAATGCCAAGAAGGCTGAAC
AAGTAGAGATACTGCAAGTTACTCATCGAGCTGAAATGGCGGAGCTGATG
GCAAAACAGGCCTCGCTAGACTGCATGGTGCTAGACAAGCAGCTGAAGTC
CGTCGAGGGTTCTTCCGAGTTGGTCCACAAACATTTGGAGGAATTGCAAA
GGCTGCAAGACGAGATGAAGAGAGTGCTTGTGGCAAACGCTAACAGTTTG
GAAAGGTGCAGTGAGCATGGGACTTTGGGGCGGCTAGAACGGCTTCTGCA
CAAGAGCTCGGGACTCGTGGGGCGTATGGCAGCCTCAGTTTTTGGTAAGC
GTAATGGGGAAGATGAAAGCACCGATAGTGTGAGACGTGAAAGTGCAGGA
CGTAATACTGTGGAGGAACGTGTGCATGATGAAGAATCTACGCCCTTGAG
GGATAGGAGACCATTGTTTTCAAAGTTCTTCTCCAACCCGAGAACGAGGA
ATGCAGGAGACTGTCAGCCAGGAATACTGCGGAAGATAACCAGGCGCCTT
CGTGGTAGAAGAGGTGGGGCGCATACCGAAAGCACGGTTCCTGTTGTCAA
GGCAGTGAAATTCGACCGTTCCGCTGTCATCGAACACAGCACCTCAGACA
TCTCAGACGAAAACGCAACCCCGGGTCATGGGGACGGCGGTGCACGAGGA
GCATTATCAGTTTTAGCAGGTTTTAGACATATGCGGTCTTTGAGGTCACT
TGTTGTGCGTCGGCTCCAACCGTGTGGTGGCGACTCACGCACTGTGAATA
TTCGATCAAGGGCGCTGGAAGCGCTCGATGAGAACCTGCAGAAACTACGG
AAGGTGGTTGATGACAAGCAGCAAGAGGTTTTCCGATTACACCGAGAGCT
GCGAGAGGCTGTACAGGCTTGCAACTTGTTCGAACAAAGTGTCCAGAAAG
AGGTTCAGAAGCGCGTTGAAGTGGAACTGAGTCTGGCTGGGTGTACGTTC
ACAACTGTGAGAGAATCCCCAGCGATGAGAGAGGATTGTACAAAAGATAG
TGCTGGCGATATTGACAAAGAAGAAGGGATCGGGATCCGAGATAGGGTGT
CAAAGCGATGGTCATGTAGCTTGTTTTAG