Ggra3599.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3599.t1
Unique Name	Ggra3599.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	367

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:213508..214608 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3880.AES65689
Preferred name	CIPK17
PFAMs	KA1,NAF,Pkinase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07198
KEGG Pathway	ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue	3.1e-72
EggNOG OGs	KOG0583@1\|root,KOG0583@2759\|Eukaryota,37NE2@33090\|Viridiplantae,3GATQ@35493\|Streptophyta,4JD0A@91835\|fabids
EC	2.7.11.11
Description	CBL-interacting serine threonine-protein kinase
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001,ko03029,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3599	Ggra3599	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 213508..214608 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3599.t1.start1	Ggra3599.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 213508..213510 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3599.t1.CDS1	Ggra3599.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 213508..214608 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3599.t1.exon1	Ggra3599.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 213508..214608 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3599.t1.stop1	Ggra3599.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 214606..214608 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3599.t1	Ggra3599.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 213508..214608 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:213508..214608+
coding sequence from alignment at tig00000850_pilon:213508..214608+

mRNA sequence

>Ggra3599.t1 ID=Ggra3599.t1|Name=Ggra3599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=367bp
MVLHHAMSYLGSLVPPECAPLRVGAYHLLDTLGQGNFGQVRRARHIHTGQ
YFAVKMVRTHVHHSELSPSLDIRREMSILRALSHPNIVQLHDVMVSSNRV
YLVMDLASGGDFFNIVTQKGCLSERLARRYFRQLVDAVHFCHQHHVFHRD
LKPENLLLDAHGNLKLSDFGFSAMKDHGSLLLRANCGSPHYCAPEVWNGT
QCNGYDGAKSDAFSIGVILFVWLTGSQPFSDVDDRVLLTKVDRCHVKYPQ
WLPPDAVDMMKKLIVRKPQHRWTLDMVKRHPWYLAGSLQLSLRDDVWQPC
AGGADVEQLGAELCTKCKLHECDLQRMAPVADADGVSGGGGAAAAVCGTD
ACSTETCSTCTTLPVS*

spliced messenger RNA

>Ggra3599.t1 ID=Ggra3599.t1|Name=Ggra3599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000850_pilon:213508..214608+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGCACCACGCCATGTCGTACCTGGGCAGTCTGGTACCGCCCGA
ATGCGCGCCGCTGCGCGTGGGCGCGTACCACCTGCTGGACACGCTGGGGC
AGGGCAACTTTGGGCAGGTGCGACGCGCGCGCCACATACACACGGGGCAG
TACTTTGCGGTGAAGATGGTGCGCACGCACGTGCACCACAGCGAGCTGTC
GCCCAGCCTGGACATTCGGCGCGAGATGAGCATCCTGCGCGCGCTGTCGC
ACCCAAACATTGTGCAGCTGCACGACGTGATGGTGTCCAGCAACCGCGTG
TACCTGGTGATGGACCTGGCGTCCGGCGGCGACTTCTTCAACATTGTGAC
GCAGAAGGGCTGCTTGTCGGAGCGCTTGGCGCGTCGCTACTTTCGGCAGC
TGGTTGATGCGGTGCATTTCTGCCACCAGCATCACGTGTTTCACCGCGAC
CTCAAGCCGGAGAACCTGCTGTTGGACGCGCATGGCAACCTCAAACTGTC
CGACTTTGGCTTCAGCGCCATGAAGGACCACGGCTCGTTGCTGCTGCGTG
CCAACTGCGGCTCGCCGCACTACTGCGCGCCGGAGGTGTGGAACGGCACG
CAGTGCAACGGCTACGACGGCGCCAAATCGGACGCGTTTTCCATCGGCGT
GATTCTGTTCGTGTGGCTGACGGGCTCGCAGCCGTTCTCGGACGTTGACG
ACCGCGTGCTGCTCACCAAGGTGGACCGCTGCCACGTCAAGTACCCGCAG
TGGCTGCCGCCCGACGCGGTGGACATGATGAAGAAGCTGATCGTGAGAAA
GCCGCAGCACCGATGGACGCTGGATATGGTGAAGAGACACCCGTGGTACC
TGGCGGGCTCGTTGCAGCTGTCGCTGCGGGACGATGTTTGGCAGCCGTGT
GCTGGCGGCGCGGACGTTGAACAGCTCGGCGCCGAGCTTTGTACAAAGTG
CAAGCTGCATGAGTGTGATTTGCAACGCATGGCGCCTGTTGCTGACGCTG
ACGGCGTCAGCGGCGGTGGTGGCGCCGCTGCTGCTGTTTGTGGCACTGAT
GCGTGTAGTACGGAGACGTGTAGCACTTGCACTACGCTGCCGGTATCGTG
A

protein sequence of Ggra3599.t1

>Ggra3599.t1 ID=Ggra3599.t1|Name=Ggra3599.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=367bp
MVLHHAMSYLGSLVPPECAPLRVGAYHLLDTLGQGNFGQVRRARHIHTGQ
YFAVKMVRTHVHHSELSPSLDIRREMSILRALSHPNIVQLHDVMVSSNRV
YLVMDLASGGDFFNIVTQKGCLSERLARRYFRQLVDAVHFCHQHHVFHRD
LKPENLLLDAHGNLKLSDFGFSAMKDHGSLLLRANCGSPHYCAPEVWNGT
QCNGYDGAKSDAFSIGVILFVWLTGSQPFSDVDDRVLLTKVDRCHVKYPQ
WLPPDAVDMMKKLIVRKPQHRWTLDMVKRHPWYLAGSLQLSLRDDVWQPC
AGGADVEQLGAELCTKCKLHECDLQRMAPVADADGVSGGGGAAAAVCGTD
ACSTETCSTCTTLPVS*

mRNA from alignment at tig00000850_pilon:213508..214608+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3599.t1 ID=Ggra3599.t1|Name=Ggra3599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000850_pilon:213508..214608+ (Gracilaria gracilis GNS1m male)
ATGGTGCTGCACCACGCCATGTCGTACCTGGGCAGTCTGGTACCGCCCGA
ATGCGCGCCGCTGCGCGTGGGCGCGTACCACCTGCTGGACACGCTGGGGC
AGGGCAACTTTGGGCAGGTGCGACGCGCGCGCCACATACACACGGGGCAG
TACTTTGCGGTGAAGATGGTGCGCACGCACGTGCACCACAGCGAGCTGTC
GCCCAGCCTGGACATTCGGCGCGAGATGAGCATCCTGCGCGCGCTGTCGC
ACCCAAACATTGTGCAGCTGCACGACGTGATGGTGTCCAGCAACCGCGTG
TACCTGGTGATGGACCTGGCGTCCGGCGGCGACTTCTTCAACATTGTGAC
GCAGAAGGGCTGCTTGTCGGAGCGCTTGGCGCGTCGCTACTTTCGGCAGC
TGGTTGATGCGGTGCATTTCTGCCACCAGCATCACGTGTTTCACCGCGAC
CTCAAGCCGGAGAACCTGCTGTTGGACGCGCATGGCAACCTCAAACTGTC
CGACTTTGGCTTCAGCGCCATGAAGGACCACGGCTCGTTGCTGCTGCGTG
CCAACTGCGGCTCGCCGCACTACTGCGCGCCGGAGGTGTGGAACGGCACG
CAGTGCAACGGCTACGACGGCGCCAAATCGGACGCGTTTTCCATCGGCGT
GATTCTGTTCGTGTGGCTGACGGGCTCGCAGCCGTTCTCGGACGTTGACG
ACCGCGTGCTGCTCACCAAGGTGGACCGCTGCCACGTCAAGTACCCGCAG
TGGCTGCCGCCCGACGCGGTGGACATGATGAAGAAGCTGATCGTGAGAAA
GCCGCAGCACCGATGGACGCTGGATATGGTGAAGAGACACCCGTGGTACC
TGGCGGGCTCGTTGCAGCTGTCGCTGCGGGACGATGTTTGGCAGCCGTGT
GCTGGCGGCGCGGACGTTGAACAGCTCGGCGCCGAGCTTTGTACAAAGTG
CAAGCTGCATGAGTGTGATTTGCAACGCATGGCGCCTGTTGCTGACGCTG
ACGGCGTCAGCGGCGGTGGTGGCGCCGCTGCTGCTGTTTGTGGCACTGAT
GCGTGTAGTACGGAGACGTGTAGCACTTGCACTACGCTGCCGGTATCGTG
A

Coding sequence (CDS) from alignment at tig00000850_pilon:213508..214608+

>Ggra3599.t1 ID=Ggra3599.t1|Name=Ggra3599.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00000850_pilon:213508..214608+ (Gracilaria gracilis GNS1m male)
ATGGTGCTGCACCACGCCATGTCGTACCTGGGCAGTCTGGTACCGCCCGA
ATGCGCGCCGCTGCGCGTGGGCGCGTACCACCTGCTGGACACGCTGGGGC
AGGGCAACTTTGGGCAGGTGCGACGCGCGCGCCACATACACACGGGGCAG
TACTTTGCGGTGAAGATGGTGCGCACGCACGTGCACCACAGCGAGCTGTC
GCCCAGCCTGGACATTCGGCGCGAGATGAGCATCCTGCGCGCGCTGTCGC
ACCCAAACATTGTGCAGCTGCACGACGTGATGGTGTCCAGCAACCGCGTG
TACCTGGTGATGGACCTGGCGTCCGGCGGCGACTTCTTCAACATTGTGAC
GCAGAAGGGCTGCTTGTCGGAGCGCTTGGCGCGTCGCTACTTTCGGCAGC
TGGTTGATGCGGTGCATTTCTGCCACCAGCATCACGTGTTTCACCGCGAC
CTCAAGCCGGAGAACCTGCTGTTGGACGCGCATGGCAACCTCAAACTGTC
CGACTTTGGCTTCAGCGCCATGAAGGACCACGGCTCGTTGCTGCTGCGTG
CCAACTGCGGCTCGCCGCACTACTGCGCGCCGGAGGTGTGGAACGGCACG
CAGTGCAACGGCTACGACGGCGCCAAATCGGACGCGTTTTCCATCGGCGT
GATTCTGTTCGTGTGGCTGACGGGCTCGCAGCCGTTCTCGGACGTTGACG
ACCGCGTGCTGCTCACCAAGGTGGACCGCTGCCACGTCAAGTACCCGCAG
TGGCTGCCGCCCGACGCGGTGGACATGATGAAGAAGCTGATCGTGAGAAA
GCCGCAGCACCGATGGACGCTGGATATGGTGAAGAGACACCCGTGGTACC
TGGCGGGCTCGTTGCAGCTGTCGCTGCGGGACGATGTTTGGCAGCCGTGT
GCTGGCGGCGCGGACGTTGAACAGCTCGGCGCCGAGCTTTGTACAAAGTG
CAAGCTGCATGAGTGTGATTTGCAACGCATGGCGCCTGTTGCTGACGCTG
ACGGCGTCAGCGGCGGTGGTGGCGCCGCTGCTGCTGTTTGTGGCACTGAT
GCGTGTAGTACGGAGACGTGTAGCACTTGCACTACGCTGCCGGTATCGTG
A