Ggra3598.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3598.t1
Unique Name	Ggra3598.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	583

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:210983..212731 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP057CT
Max annot lvl	2759\|Eukaryota
Evalue	1.34e-46
EggNOG OGs	2CY8W@1\|root,2S2UA@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3598	Ggra3598	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 210983..212731 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3598.t1.stop1	Ggra3598.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 210983..210985 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3598.t1.CDS1	Ggra3598.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 210983..212731 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3598.t1.exon1	Ggra3598.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 210983..212731 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3598.t1.start1	Ggra3598.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 212729..212731 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3598.t1	Ggra3598.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 210983..212731 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:210983..212731-
coding sequence from alignment at tig00000850_pilon:210983..212731-

mRNA sequence

>Ggra3598.t1 ID=Ggra3598.t1|Name=Ggra3598.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=583bp
MSLLAFSPLLAPPCGRAHRRAAALSTRAPQPSRVRAPRCALSHAAAAGGG
GGGSAGSPPNRSLASLHELTERIADLLHVGSIHNDYLHSPKDAPLGYLHA
TTHVVVVFGKHLIRDQLTVEYAKRIITLVKQIARGALNPHVICFTGGNGL
HDDGTISEAAAGYAFFRNVCEEANVDVSNFQFILEHNSHNTKQNLRNVIE
ELRRRFGADALSACHFTLVSSDYHLIRIQEVHRLSPRQSMLFPLEVSAST
WNCIFAAYPFCVSRDPATAFLGRAVVLANDLAILHVNLKGALVDREFVSK
DNLDRLNDTFAKMREMYRVIHSNTSATGGFRTDMRNHAETLELAIHHIRE
VHTLLGPLNETGASVPHAHLDLALEHLTSAIRAMRSSMDPDRVLKTHDRM
AIIDDMINFVAEQKGSSSPSPHSAGPGGDKQHSLHSAESDDVSFFDSNAG
KPSDKRKPPTRMTTTMINEVTWRGGQMFKGNGKKIARDGPNIIIADSAAP
TPPQRTPPRTRRTAAHSDTLAGALASSLVSNKAPKPRSSTSNPNSRSRSS
TTRKAPTRASTPSRKRKPSTRKLASPSQSESA*

spliced messenger RNA

>Ggra3598.t1 ID=Ggra3598.t1|Name=Ggra3598.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000850_pilon:210983..212731- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCCTCGCCTTCTCGCCGCTGCTGGCGCCGCCGTGCGGCCGCGC
GCATCGTCGCGCCGCCGCGCTGTCCACGCGCGCGCCGCAGCCGTCGCGCG
TGCGCGCGCCGCGCTGCGCGCTGTCGCACGCCGCCGCCGCCGGTGGTGGC
GGCGGCGGCAGCGCTGGCTCGCCGCCCAACCGTTCGCTGGCCAGTTTGCA
CGAGCTCACGGAACGCATCGCCGACCTGCTGCACGTGGGCTCCATCCACA
ACGACTACCTGCACTCCCCCAAGGACGCGCCGCTGGGTTACCTGCACGCC
ACCACGCACGTCGTCGTCGTGTTTGGCAAGCACTTGATTCGCGACCAGCT
CACCGTCGAGTACGCCAAGCGTATCATCACGCTGGTCAAGCAGATTGCGC
GCGGCGCGCTCAACCCGCACGTCATCTGTTTCACGGGCGGTAACGGCCTG
CACGACGACGGTACCATCTCGGAGGCCGCCGCGGGCTACGCCTTTTTCCG
CAACGTCTGCGAGGAGGCTAACGTCGACGTGTCCAACTTCCAGTTCATCC
TGGAGCACAATAGCCACAATACCAAGCAGAACTTGCGGAACGTCATTGAG
GAGCTGCGCCGTCGCTTCGGCGCCGACGCGCTCTCGGCCTGCCACTTCAC
GCTCGTGTCCAGCGACTACCACCTCATTCGCATCCAGGAGGTGCATCGCC
TCAGCCCGCGGCAGAGCATGCTCTTCCCGCTCGAGGTCTCCGCCTCCACC
TGGAACTGCATCTTTGCCGCCTATCCCTTCTGCGTCAGTCGTGACCCGGC
CACCGCCTTTCTGGGCCGCGCCGTCGTGCTGGCAAACGACCTCGCCATTC
TTCACGTCAATCTCAAGGGCGCTCTCGTCGACCGCGAGTTCGTGTCCAAG
GACAACCTGGACCGTCTCAACGACACCTTCGCCAAGATGCGCGAGATGTA
TCGCGTCATCCATTCCAACACCTCGGCCACCGGTGGCTTCCGTACCGACA
TGCGCAACCACGCCGAAACTCTCGAACTTGCCATCCACCATATTCGCGAG
GTGCACACCCTGCTTGGCCCGCTCAATGAAACGGGCGCCTCCGTCCCGCA
CGCCCACCTCGACCTTGCTTTGGAGCATCTTACCAGCGCTATCCGTGCCA
TGCGCTCGTCCATGGACCCTGACCGAGTGCTCAAGACGCACGACCGAATG
GCCATCATCGACGACATGATCAATTTTGTTGCGGAACAAAAAGGTAGCTC
TTCACCATCGCCTCACTCTGCTGGCCCTGGCGGTGACAAGCAGCACAGTT
TGCACTCTGCCGAAAGCGACGATGTCTCCTTCTTTGACTCAAACGCAGGA
AAGCCGTCCGACAAGCGCAAGCCGCCCACGCGAATGACCACCACCATGAT
CAATGAAGTTACTTGGAGGGGCGGCCAGATGTTCAAGGGCAACGGCAAGA
AGATTGCTCGAGATGGACCCAACATCATCATTGCCGACAGTGCAGCCCCC
ACCCCCCCGCAAAGAACCCCCCCAAGAACCCGTCGCACCGCCGCTCATTC
AGACACTCTGGCGGGAGCGCTTGCAAGCTCGTTGGTGTCTAACAAAGCAC
CCAAACCGCGATCGTCTACTTCAAATCCGAATTCCCGATCCCGTTCCTCC
ACTACTCGCAAGGCGCCCACCCGTGCGTCAACCCCCTCCAGGAAACGGAA
ACCGTCGACCCGAAAGCTTGCTAGTCCGTCCCAGAGCGAAAGCGCTTAA

protein sequence of Ggra3598.t1

>Ggra3598.t1 ID=Ggra3598.t1|Name=Ggra3598.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=583bp
MSLLAFSPLLAPPCGRAHRRAAALSTRAPQPSRVRAPRCALSHAAAAGGG
GGGSAGSPPNRSLASLHELTERIADLLHVGSIHNDYLHSPKDAPLGYLHA
TTHVVVVFGKHLIRDQLTVEYAKRIITLVKQIARGALNPHVICFTGGNGL
HDDGTISEAAAGYAFFRNVCEEANVDVSNFQFILEHNSHNTKQNLRNVIE
ELRRRFGADALSACHFTLVSSDYHLIRIQEVHRLSPRQSMLFPLEVSAST
WNCIFAAYPFCVSRDPATAFLGRAVVLANDLAILHVNLKGALVDREFVSK
DNLDRLNDTFAKMREMYRVIHSNTSATGGFRTDMRNHAETLELAIHHIRE
VHTLLGPLNETGASVPHAHLDLALEHLTSAIRAMRSSMDPDRVLKTHDRM
AIIDDMINFVAEQKGSSSPSPHSAGPGGDKQHSLHSAESDDVSFFDSNAG
KPSDKRKPPTRMTTTMINEVTWRGGQMFKGNGKKIARDGPNIIIADSAAP
TPPQRTPPRTRRTAAHSDTLAGALASSLVSNKAPKPRSSTSNPNSRSRSS
TTRKAPTRASTPSRKRKPSTRKLASPSQSESA*

mRNA from alignment at tig00000850_pilon:210983..212731-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3598.t1 ID=Ggra3598.t1|Name=Ggra3598.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000850_pilon:210983..212731- (Gracilaria gracilis GNS1m male)
ATGTCGCTCCTCGCCTTCTCGCCGCTGCTGGCGCCGCCGTGCGGCCGCGC
GCATCGTCGCGCCGCCGCGCTGTCCACGCGCGCGCCGCAGCCGTCGCGCG
TGCGCGCGCCGCGCTGCGCGCTGTCGCACGCCGCCGCCGCCGGTGGTGGC
GGCGGCGGCAGCGCTGGCTCGCCGCCCAACCGTTCGCTGGCCAGTTTGCA
CGAGCTCACGGAACGCATCGCCGACCTGCTGCACGTGGGCTCCATCCACA
ACGACTACCTGCACTCCCCCAAGGACGCGCCGCTGGGTTACCTGCACGCC
ACCACGCACGTCGTCGTCGTGTTTGGCAAGCACTTGATTCGCGACCAGCT
CACCGTCGAGTACGCCAAGCGTATCATCACGCTGGTCAAGCAGATTGCGC
GCGGCGCGCTCAACCCGCACGTCATCTGTTTCACGGGCGGTAACGGCCTG
CACGACGACGGTACCATCTCGGAGGCCGCCGCGGGCTACGCCTTTTTCCG
CAACGTCTGCGAGGAGGCTAACGTCGACGTGTCCAACTTCCAGTTCATCC
TGGAGCACAATAGCCACAATACCAAGCAGAACTTGCGGAACGTCATTGAG
GAGCTGCGCCGTCGCTTCGGCGCCGACGCGCTCTCGGCCTGCCACTTCAC
GCTCGTGTCCAGCGACTACCACCTCATTCGCATCCAGGAGGTGCATCGCC
TCAGCCCGCGGCAGAGCATGCTCTTCCCGCTCGAGGTCTCCGCCTCCACC
TGGAACTGCATCTTTGCCGCCTATCCCTTCTGCGTCAGTCGTGACCCGGC
CACCGCCTTTCTGGGCCGCGCCGTCGTGCTGGCAAACGACCTCGCCATTC
TTCACGTCAATCTCAAGGGCGCTCTCGTCGACCGCGAGTTCGTGTCCAAG
GACAACCTGGACCGTCTCAACGACACCTTCGCCAAGATGCGCGAGATGTA
TCGCGTCATCCATTCCAACACCTCGGCCACCGGTGGCTTCCGTACCGACA
TGCGCAACCACGCCGAAACTCTCGAACTTGCCATCCACCATATTCGCGAG
GTGCACACCCTGCTTGGCCCGCTCAATGAAACGGGCGCCTCCGTCCCGCA
CGCCCACCTCGACCTTGCTTTGGAGCATCTTACCAGCGCTATCCGTGCCA
TGCGCTCGTCCATGGACCCTGACCGAGTGCTCAAGACGCACGACCGAATG
GCCATCATCGACGACATGATCAATTTTGTTGCGGAACAAAAAGGTAGCTC
TTCACCATCGCCTCACTCTGCTGGCCCTGGCGGTGACAAGCAGCACAGTT
TGCACTCTGCCGAAAGCGACGATGTCTCCTTCTTTGACTCAAACGCAGGA
AAGCCGTCCGACAAGCGCAAGCCGCCCACGCGAATGACCACCACCATGAT
CAATGAAGTTACTTGGAGGGGCGGCCAGATGTTCAAGGGCAACGGCAAGA
AGATTGCTCGAGATGGACCCAACATCATCATTGCCGACAGTGCAGCCCCC
ACCCCCCCGCAAAGAACCCCCCCAAGAACCCGTCGCACCGCCGCTCATTC
AGACACTCTGGCGGGAGCGCTTGCAAGCTCGTTGGTGTCTAACAAAGCAC
CCAAACCGCGATCGTCTACTTCAAATCCGAATTCCCGATCCCGTTCCTCC
ACTACTCGCAAGGCGCCCACCCGTGCGTCAACCCCCTCCAGGAAACGGAA
ACCGTCGACCCGAAAGCTTGCTAGTCCGTCCCAGAGCGAAAGCGCTTAA

Coding sequence (CDS) from alignment at tig00000850_pilon:210983..212731-

>Ggra3598.t1 ID=Ggra3598.t1|Name=Ggra3598.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00000850_pilon:210983..212731- (Gracilaria gracilis GNS1m male)
ATGTCGCTCCTCGCCTTCTCGCCGCTGCTGGCGCCGCCGTGCGGCCGCGC
GCATCGTCGCGCCGCCGCGCTGTCCACGCGCGCGCCGCAGCCGTCGCGCG
TGCGCGCGCCGCGCTGCGCGCTGTCGCACGCCGCCGCCGCCGGTGGTGGC
GGCGGCGGCAGCGCTGGCTCGCCGCCCAACCGTTCGCTGGCCAGTTTGCA
CGAGCTCACGGAACGCATCGCCGACCTGCTGCACGTGGGCTCCATCCACA
ACGACTACCTGCACTCCCCCAAGGACGCGCCGCTGGGTTACCTGCACGCC
ACCACGCACGTCGTCGTCGTGTTTGGCAAGCACTTGATTCGCGACCAGCT
CACCGTCGAGTACGCCAAGCGTATCATCACGCTGGTCAAGCAGATTGCGC
GCGGCGCGCTCAACCCGCACGTCATCTGTTTCACGGGCGGTAACGGCCTG
CACGACGACGGTACCATCTCGGAGGCCGCCGCGGGCTACGCCTTTTTCCG
CAACGTCTGCGAGGAGGCTAACGTCGACGTGTCCAACTTCCAGTTCATCC
TGGAGCACAATAGCCACAATACCAAGCAGAACTTGCGGAACGTCATTGAG
GAGCTGCGCCGTCGCTTCGGCGCCGACGCGCTCTCGGCCTGCCACTTCAC
GCTCGTGTCCAGCGACTACCACCTCATTCGCATCCAGGAGGTGCATCGCC
TCAGCCCGCGGCAGAGCATGCTCTTCCCGCTCGAGGTCTCCGCCTCCACC
TGGAACTGCATCTTTGCCGCCTATCCCTTCTGCGTCAGTCGTGACCCGGC
CACCGCCTTTCTGGGCCGCGCCGTCGTGCTGGCAAACGACCTCGCCATTC
TTCACGTCAATCTCAAGGGCGCTCTCGTCGACCGCGAGTTCGTGTCCAAG
GACAACCTGGACCGTCTCAACGACACCTTCGCCAAGATGCGCGAGATGTA
TCGCGTCATCCATTCCAACACCTCGGCCACCGGTGGCTTCCGTACCGACA
TGCGCAACCACGCCGAAACTCTCGAACTTGCCATCCACCATATTCGCGAG
GTGCACACCCTGCTTGGCCCGCTCAATGAAACGGGCGCCTCCGTCCCGCA
CGCCCACCTCGACCTTGCTTTGGAGCATCTTACCAGCGCTATCCGTGCCA
TGCGCTCGTCCATGGACCCTGACCGAGTGCTCAAGACGCACGACCGAATG
GCCATCATCGACGACATGATCAATTTTGTTGCGGAACAAAAAGGTAGCTC
TTCACCATCGCCTCACTCTGCTGGCCCTGGCGGTGACAAGCAGCACAGTT
TGCACTCTGCCGAAAGCGACGATGTCTCCTTCTTTGACTCAAACGCAGGA
AAGCCGTCCGACAAGCGCAAGCCGCCCACGCGAATGACCACCACCATGAT
CAATGAAGTTACTTGGAGGGGCGGCCAGATGTTCAAGGGCAACGGCAAGA
AGATTGCTCGAGATGGACCCAACATCATCATTGCCGACAGTGCAGCCCCC
ACCCCCCCGCAAAGAACCCCCCCAAGAACCCGTCGCACCGCCGCTCATTC
AGACACTCTGGCGGGAGCGCTTGCAAGCTCGTTGGTGTCTAACAAAGCAC
CCAAACCGCGATCGTCTACTTCAAATCCGAATTCCCGATCCCGTTCCTCC
ACTACTCGCAAGGCGCCCACCCGTGCGTCAACCCCCTCCAGGAAACGGAA
ACCGTCGACCCGAAAGCTTGCTAGTCCGTCCCAGAGCGAAAGCGCTTAA