Ggra3596.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3596.t1
Unique NameGgra3596.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:206025..206906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707559.1
PFAMsACBP,Ank_2,Ank_4,Ank_5
Max annot lvl2759|Eukaryota
GOsGO:0000003,GO:0000062,GO:0000166,GO:0001101,GO:0001666,GO:0003006,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0005886,GO:0006629,GO:0006810,GO:0006869,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008289,GO:0009266,GO:0009409,GO:0009505,GO:0009514,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0010029,GO:0010033,GO:0010035,GO:0010038,GO:0010154,GO:0010162,GO:0010288,GO:0010431,GO:0010876,GO:0012505,GO:0016020,GO:0017076,GO:0021700,GO:0022414,GO:0022611,GO:0030312,GO:0030554,GO:0031090,GO:0031903,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032791,GO:0033036,GO:0033218,GO:0033993,GO:0036094,GO:0036293,GO:0042175,GO:0042221,GO:0042579,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048037,GO:0048316,GO:0048580,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050662,GO:0050789,GO:0050793,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0061458,GO:0065007,GO:0070300,GO:0070482,GO:0071695,GO:0071702,GO:0071704,GO:0071944,GO:0097159,GO:0097305,GO:0097367,GO:0098588,GO:0098805,GO:0098827,GO:1900140,GO:1901265,GO:1901363,GO:1901567,GO:1901681,GO:1901700,GO:2000026
Evalue2.8e-22
EggNOG OGsCOG4281@1|root,KOG0817@2759|Eukaryota
Descriptionfatty-acyl-CoA binding
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3596Ggra3596Gracilaria gracilis GNS1m malegenetig00000850_pilon 206025..206906 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3596.t1.start1Ggra3596.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 206025..206027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3596.t1.CDS1Ggra3596.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 206025..206906 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3596.t1.exon1Ggra3596.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 206025..206906 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3596.t1.stop1Ggra3596.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 206904..206906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3596.t1Ggra3596.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 206025..206906 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3596.t1 ID=Ggra3596.t1|Name=Ggra3596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MADETEAAFEKAAQFISSGKLTNVSQEEQLELYGLYSVVKKGIAPNQGPS
AFLDPTGFAKWTAWHASSHLDREEAMNEYIQLVANLRSTAASKSSVLKHG
SGFGNKASAGFDVSPENEEDSAEHFDICYWAAVGNMSAVVQCLRTQGVSP
DYKDQDGLTPLMRAVDRNEFQVVDILVEAGADINAVDEEGQTALHYAVYC
DHSEMVGLLLSYGARTDINDMHGVDALTPASDETRTIVDEVRQGKWKRKT
KPLSQGRLLFSAYIPNMTNTSKQLFLASVVIGIVAAAYYRLRK*
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spliced messenger RNA

>Ggra3596.t1 ID=Ggra3596.t1|Name=Ggra3596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000850_pilon:206025..206906+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGATGAGACGGAAGCCGCATTCGAAAAGGCAGCCCAATTCATATC
ATCAGGGAAGCTTACAAACGTTTCTCAAGAAGAACAATTAGAACTGTATG
GCTTGTACTCCGTAGTCAAGAAAGGCATTGCGCCAAACCAAGGACCATCG
GCATTTCTTGATCCTACTGGATTCGCGAAATGGACGGCGTGGCATGCGAG
TAGTCATTTGGACCGTGAGGAAGCGATGAACGAATACATCCAACTTGTGG
CCAACCTCCGAAGTACTGCGGCATCAAAGTCGTCCGTATTAAAGCATGGT
TCGGGATTCGGGAATAAGGCATCGGCAGGTTTCGATGTTTCTCCCGAAAA
TGAAGAAGATTCAGCGGAGCACTTTGATATATGCTACTGGGCGGCTGTCG
GTAACATGTCGGCAGTTGTCCAATGCTTAAGAACACAAGGGGTATCTCCA
GATTATAAAGACCAGGACGGTCTTACCCCTTTGATGCGTGCTGTTGATAG
GAATGAGTTTCAAGTTGTAGATATTCTAGTTGAAGCAGGTGCGGATATCA
ACGCCGTTGATGAGGAGGGGCAGACTGCTTTACACTACGCTGTTTATTGC
GATCACTCCGAAATGGTCGGACTGCTACTTTCATATGGTGCTCGTACGGA
CATCAATGACATGCATGGAGTCGACGCGTTGACGCCCGCTAGTGACGAAA
CGAGAACTATTGTTGATGAAGTAAGACAAGGAAAGTGGAAAAGGAAGACT
AAACCACTTAGCCAAGGTCGATTATTATTTAGTGCATATATCCCGAACAT
GACGAATACTTCCAAGCAGTTGTTCCTTGCATCCGTAGTCATCGGTATCG
TAGCTGCTGCTTACTATCGTTTACGTAAATGA
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protein sequence of Ggra3596.t1

>Ggra3596.t1 ID=Ggra3596.t1|Name=Ggra3596.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MADETEAAFEKAAQFISSGKLTNVSQEEQLELYGLYSVVKKGIAPNQGPS
AFLDPTGFAKWTAWHASSHLDREEAMNEYIQLVANLRSTAASKSSVLKHG
SGFGNKASAGFDVSPENEEDSAEHFDICYWAAVGNMSAVVQCLRTQGVSP
DYKDQDGLTPLMRAVDRNEFQVVDILVEAGADINAVDEEGQTALHYAVYC
DHSEMVGLLLSYGARTDINDMHGVDALTPASDETRTIVDEVRQGKWKRKT
KPLSQGRLLFSAYIPNMTNTSKQLFLASVVIGIVAAAYYRLRK*
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mRNA from alignment at tig00000850_pilon:206025..206906+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3596.t1 ID=Ggra3596.t1|Name=Ggra3596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000850_pilon:206025..206906+ (Gracilaria gracilis GNS1m male)
ATGGCGGATGAGACGGAAGCCGCATTCGAAAAGGCAGCCCAATTCATATC
ATCAGGGAAGCTTACAAACGTTTCTCAAGAAGAACAATTAGAACTGTATG
GCTTGTACTCCGTAGTCAAGAAAGGCATTGCGCCAAACCAAGGACCATCG
GCATTTCTTGATCCTACTGGATTCGCGAAATGGACGGCGTGGCATGCGAG
TAGTCATTTGGACCGTGAGGAAGCGATGAACGAATACATCCAACTTGTGG
CCAACCTCCGAAGTACTGCGGCATCAAAGTCGTCCGTATTAAAGCATGGT
TCGGGATTCGGGAATAAGGCATCGGCAGGTTTCGATGTTTCTCCCGAAAA
TGAAGAAGATTCAGCGGAGCACTTTGATATATGCTACTGGGCGGCTGTCG
GTAACATGTCGGCAGTTGTCCAATGCTTAAGAACACAAGGGGTATCTCCA
GATTATAAAGACCAGGACGGTCTTACCCCTTTGATGCGTGCTGTTGATAG
GAATGAGTTTCAAGTTGTAGATATTCTAGTTGAAGCAGGTGCGGATATCA
ACGCCGTTGATGAGGAGGGGCAGACTGCTTTACACTACGCTGTTTATTGC
GATCACTCCGAAATGGTCGGACTGCTACTTTCATATGGTGCTCGTACGGA
CATCAATGACATGCATGGAGTCGACGCGTTGACGCCCGCTAGTGACGAAA
CGAGAACTATTGTTGATGAAGTAAGACAAGGAAAGTGGAAAAGGAAGACT
AAACCACTTAGCCAAGGTCGATTATTATTTAGTGCATATATCCCGAACAT
GACGAATACTTCCAAGCAGTTGTTCCTTGCATCCGTAGTCATCGGTATCG
TAGCTGCTGCTTACTATCGTTTACGTAAATGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:206025..206906+

>Ggra3596.t1 ID=Ggra3596.t1|Name=Ggra3596.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000850_pilon:206025..206906+ (Gracilaria gracilis GNS1m male)
ATGGCGGATGAGACGGAAGCCGCATTCGAAAAGGCAGCCCAATTCATATC
ATCAGGGAAGCTTACAAACGTTTCTCAAGAAGAACAATTAGAACTGTATG
GCTTGTACTCCGTAGTCAAGAAAGGCATTGCGCCAAACCAAGGACCATCG
GCATTTCTTGATCCTACTGGATTCGCGAAATGGACGGCGTGGCATGCGAG
TAGTCATTTGGACCGTGAGGAAGCGATGAACGAATACATCCAACTTGTGG
CCAACCTCCGAAGTACTGCGGCATCAAAGTCGTCCGTATTAAAGCATGGT
TCGGGATTCGGGAATAAGGCATCGGCAGGTTTCGATGTTTCTCCCGAAAA
TGAAGAAGATTCAGCGGAGCACTTTGATATATGCTACTGGGCGGCTGTCG
GTAACATGTCGGCAGTTGTCCAATGCTTAAGAACACAAGGGGTATCTCCA
GATTATAAAGACCAGGACGGTCTTACCCCTTTGATGCGTGCTGTTGATAG
GAATGAGTTTCAAGTTGTAGATATTCTAGTTGAAGCAGGTGCGGATATCA
ACGCCGTTGATGAGGAGGGGCAGACTGCTTTACACTACGCTGTTTATTGC
GATCACTCCGAAATGGTCGGACTGCTACTTTCATATGGTGCTCGTACGGA
CATCAATGACATGCATGGAGTCGACGCGTTGACGCCCGCTAGTGACGAAA
CGAGAACTATTGTTGATGAAGTAAGACAAGGAAAGTGGAAAAGGAAGACT
AAACCACTTAGCCAAGGTCGATTATTATTTAGTGCATATATCCCGAACAT
GACGAATACTTCCAAGCAGTTGTTCCTTGCATCCGTAGTCATCGGTATCG
TAGCTGCTGCTTACTATCGTTTACGTAAATGA
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