Ggra3592.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3592.t1
Unique NameGgra3592.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:197598..198236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX35917
Max annot lvl2759|Eukaryota
Evalue4.35e-26
EggNOG OGs2C200@1|root,2S7SE@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3592Ggra3592Gracilaria gracilis GNS1m malegenetig00000850_pilon 197598..198236 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3592.t1.stop1Ggra3592.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 197598..197600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3592.t1.CDS1Ggra3592.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 197598..198236 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3592.t1.exon1Ggra3592.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 197598..198236 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3592.t1.start1Ggra3592.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 198234..198236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3592.t1Ggra3592.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 197598..198236 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3592.t1 ID=Ggra3592.t1|Name=Ggra3592.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MAQGTQMQPAFSNAVSFRPAIRPVHSTSLRCPISPVRQTNPTPATVQPLR
RTPHMRKGPRSRQPVQQSRRPDSAPSLPEDGTPVFAIFVRSQRAKLWYPL
GAVQGDDRSKSLVDALKGGFAKGMYENALDKGIAQTVYGKDRERFLQNAL
RMYPQLKRSQSSLEFGYKVAAIGLDERKIKLVEPDMALPFPAWVKKRVES
AFKSLTSPGGES*
back to top

spliced messenger RNA

>Ggra3592.t1 ID=Ggra3592.t1|Name=Ggra3592.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000850_pilon:197598..198236- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAAGGTACTCAAATGCAGCCGGCCTTCTCCAACGCCGTTTCGTT
CCGACCGGCCATTCGGCCTGTTCACTCCACAAGCTTGCGCTGTCCGATAT
CACCTGTTCGCCAGACGAACCCTACGCCAGCCACCGTTCAGCCGCTTCGT
CGCACGCCGCACATGAGAAAGGGTCCGAGATCTCGACAGCCTGTACAGCA
ATCTCGTCGACCTGATTCTGCACCCTCTCTGCCGGAGGATGGCACACCAG
TCTTTGCCATCTTCGTCCGTTCGCAGCGCGCAAAACTATGGTATCCTCTT
GGAGCTGTGCAGGGAGACGATCGTTCAAAGTCGCTGGTCGACGCTTTGAA
GGGAGGTTTTGCGAAGGGCATGTACGAGAACGCGTTGGATAAGGGTATTG
CTCAAACCGTTTATGGAAAGGATAGGGAGCGATTTCTACAGAACGCATTG
AGAATGTATCCGCAATTGAAGAGGTCGCAGAGCAGTTTGGAATTTGGATA
TAAAGTGGCTGCCATTGGACTTGATGAGAGGAAGATTAAGCTCGTCGAAC
CTGATATGGCGTTGCCTTTCCCGGCATGGGTGAAGAAGCGCGTTGAGAGC
GCTTTTAAGTCACTCACATCACCAGGCGGGGAGTCGTAG
back to top

protein sequence of Ggra3592.t1

>Ggra3592.t1 ID=Ggra3592.t1|Name=Ggra3592.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MAQGTQMQPAFSNAVSFRPAIRPVHSTSLRCPISPVRQTNPTPATVQPLR
RTPHMRKGPRSRQPVQQSRRPDSAPSLPEDGTPVFAIFVRSQRAKLWYPL
GAVQGDDRSKSLVDALKGGFAKGMYENALDKGIAQTVYGKDRERFLQNAL
RMYPQLKRSQSSLEFGYKVAAIGLDERKIKLVEPDMALPFPAWVKKRVES
AFKSLTSPGGES*
back to top

mRNA from alignment at tig00000850_pilon:197598..198236-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3592.t1 ID=Ggra3592.t1|Name=Ggra3592.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000850_pilon:197598..198236- (Gracilaria gracilis GNS1m male)
ATGGCGCAAGGTACTCAAATGCAGCCGGCCTTCTCCAACGCCGTTTCGTT
CCGACCGGCCATTCGGCCTGTTCACTCCACAAGCTTGCGCTGTCCGATAT
CACCTGTTCGCCAGACGAACCCTACGCCAGCCACCGTTCAGCCGCTTCGT
CGCACGCCGCACATGAGAAAGGGTCCGAGATCTCGACAGCCTGTACAGCA
ATCTCGTCGACCTGATTCTGCACCCTCTCTGCCGGAGGATGGCACACCAG
TCTTTGCCATCTTCGTCCGTTCGCAGCGCGCAAAACTATGGTATCCTCTT
GGAGCTGTGCAGGGAGACGATCGTTCAAAGTCGCTGGTCGACGCTTTGAA
GGGAGGTTTTGCGAAGGGCATGTACGAGAACGCGTTGGATAAGGGTATTG
CTCAAACCGTTTATGGAAAGGATAGGGAGCGATTTCTACAGAACGCATTG
AGAATGTATCCGCAATTGAAGAGGTCGCAGAGCAGTTTGGAATTTGGATA
TAAAGTGGCTGCCATTGGACTTGATGAGAGGAAGATTAAGCTCGTCGAAC
CTGATATGGCGTTGCCTTTCCCGGCATGGGTGAAGAAGCGCGTTGAGAGC
GCTTTTAAGTCACTCACATCACCAGGCGGGGAGTCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:197598..198236-

>Ggra3592.t1 ID=Ggra3592.t1|Name=Ggra3592.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000850_pilon:197598..198236- (Gracilaria gracilis GNS1m male)
ATGGCGCAAGGTACTCAAATGCAGCCGGCCTTCTCCAACGCCGTTTCGTT
CCGACCGGCCATTCGGCCTGTTCACTCCACAAGCTTGCGCTGTCCGATAT
CACCTGTTCGCCAGACGAACCCTACGCCAGCCACCGTTCAGCCGCTTCGT
CGCACGCCGCACATGAGAAAGGGTCCGAGATCTCGACAGCCTGTACAGCA
ATCTCGTCGACCTGATTCTGCACCCTCTCTGCCGGAGGATGGCACACCAG
TCTTTGCCATCTTCGTCCGTTCGCAGCGCGCAAAACTATGGTATCCTCTT
GGAGCTGTGCAGGGAGACGATCGTTCAAAGTCGCTGGTCGACGCTTTGAA
GGGAGGTTTTGCGAAGGGCATGTACGAGAACGCGTTGGATAAGGGTATTG
CTCAAACCGTTTATGGAAAGGATAGGGAGCGATTTCTACAGAACGCATTG
AGAATGTATCCGCAATTGAAGAGGTCGCAGAGCAGTTTGGAATTTGGATA
TAAAGTGGCTGCCATTGGACTTGATGAGAGGAAGATTAAGCTCGTCGAAC
CTGATATGGCGTTGCCTTTCCCGGCATGGGTGAAGAAGCGCGTTGAGAGC
GCTTTTAAGTCACTCACATCACCAGGCGGGGAGTCGTAG
back to top