Ggra3585.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3585.t1
Unique Name	Ggra3585.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:83659..85413 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3585	Ggra3585	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 83659..85413 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3585.t1	Ggra3585.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 83659..85413 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3585.t1.start1	Ggra3585.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 83659..83661 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3585.t1.CDS1	Ggra3585.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 83659..83983 +
Ggra3585.t1.CDS2	Ggra3585.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 84047..85413 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3585.t1.exon1	Ggra3585.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 83659..83983 +
Ggra3585.t1.exon2	Ggra3585.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 84047..85413 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3585.t1.intron1	Ggra3585.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000850_pilon 83984..84046 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3585.t1.stop1	Ggra3585.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 85411..85413 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:83659..85413+
coding sequence from alignment at tig00000850_pilon:83659..85413+

mRNA sequence

>Ggra3585.t1 ID=Ggra3585.t1|Name=Ggra3585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp
MNVVRSWSLSKLKRTVGRWVKRRKLGDRRLLLFSDPKPPRYSRNKRKSKE
ISTTNDEEAIIKTSERSSEVRTTVDGDNKLHSKVQTTQTKEHTPSPKKSK
VQPIDDTSQWMHYRDWRQPATFDAVADLETKLRNEKAAHGDLQDASNVLM
QAAVTTKLKILSNVRECLGEGRKKGIGESHTIDLTRLIRDQYERIHNEEE
KEIVVQATGGFQQQKLFLEGRDVTGSQKGSDATDQAVMFTVSFLNNWSAA
SLQFVYLADSLHTSGWWFSRLTLKSKSLKKLEKSLLDRRGSLCKYHERVW
CSEKNLIPLSGSDHWSLEIVKNLPAILNNLKGGCSEGLVGKNASITILDS
LGADSFHAGLCANFMLYLRACFPSNKKPPLHDLHKNIACNGLMFEIQKQR
ECGFFATYHAMMVARNWDILRRGNQKDLRVYLRSSYDNSPFAQYECLIQN
RLRIFLLEFIRNGGRVLQSSVFLWNCATPLTKRTWSKSEISPSHPKIRDT
GDGKTTGPLKADGNPRLNELTALVEEGQRLIENVCDVKLTQEWDACGEQL
RNLVAKLKNLGSK*

spliced messenger RNA

>Ggra3585.t1 ID=Ggra3585.t1|Name=Ggra3585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000850_pilon:83659..85413+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTGGTTCGAAGCTGGTCCTTGTCAAAGCTGAAACGAACAGTGGG
GAGATGGGTGAAACGTCGGAAGCTTGGAGATCGACGTCTTTTGCTTTTCT
CTGATCCTAAACCTCCTCGGTATTCGAGAAACAAGAGGAAAAGCAAGGAA
ATAAGCACCACCAATGACGAAGAGGCCATCATAAAAACATCCGAGCGCAG
CTCTGAAGTGCGAACCACTGTAGACGGTGACAATAAACTGCACTCCAAAG
TGCAAACGACACAAACGAAAGAGCACACACCGTCGCCAAAGAAGAGTAAA
GTGCAACCAATTGATGACACTTCCCAATGGATGCATTACCGAGACTGGAG
ACAGCCAGCCACATTCGACGCAGTCGCCGATCTGGAAACGAAATTGCGCA
ACGAAAAAGCAGCACATGGGGATCTCCAGGACGCTTCGAATGTACTTATG
CAGGCTGCAGTAACGACAAAACTCAAGATATTAAGCAATGTGCGAGAATG
TTTGGGAGAGGGCCGCAAGAAGGGTATTGGGGAATCGCACACAATCGATC
TCACCCGCCTGATTAGAGACCAGTACGAAAGAATACACAATGAGGAAGAG
AAGGAAATTGTTGTCCAAGCCACGGGAGGTTTTCAGCAACAGAAGCTCTT
CTTGGAGGGTAGAGATGTCACTGGCTCACAAAAAGGTAGTGATGCAACAG
ATCAGGCAGTAATGTTCACTGTCTCTTTCCTCAACAACTGGAGTGCTGCC
AGTCTTCAGTTCGTATACCTCGCAGACTCCCTGCATACATCTGGATGGTG
GTTTTCACGTCTCACCTTGAAGTCAAAGTCTCTCAAGAAATTGGAGAAAT
CTCTGCTAGATCGCAGGGGATCTCTGTGCAAGTACCACGAACGGGTTTGG
TGCTCGGAAAAAAATTTGATTCCTTTGTCAGGAAGCGACCATTGGTCTCT
GGAAATCGTGAAAAACCTGCCAGCCATATTGAATAACCTTAAAGGCGGTT
GTTCTGAGGGTTTGGTTGGCAAAAACGCTTCAATTACCATTCTCGATAGT
TTGGGGGCGGATTCTTTTCATGCTGGTCTATGTGCGAATTTCATGTTATA
TCTGAGAGCCTGCTTTCCTTCGAACAAGAAACCGCCTTTACATGATCTGC
ACAAAAATATTGCCTGCAATGGTCTCATGTTCGAAATCCAAAAACAGCGA
GAGTGTGGTTTCTTCGCAACGTACCATGCCATGATGGTAGCGAGAAACTG
GGACATCCTCCGAAGGGGTAACCAGAAAGACCTCCGTGTCTATTTGCGTA
GCAGTTACGATAACTCCCCGTTCGCGCAATATGAGTGTCTCATTCAAAAT
CGTCTTCGTATATTCTTGCTGGAGTTTATCCGCAACGGTGGCAGAGTGTT
ACAAAGTAGCGTGTTCCTATGGAATTGTGCTACTCCACTCACCAAGAGGA
CCTGGTCAAAGAGCGAGATCTCTCCAAGTCACCCTAAAATTAGGGACACA
GGCGACGGTAAAACTACAGGGCCACTCAAAGCTGATGGAAACCCAAGACT
CAATGAACTAACAGCACTCGTAGAGGAAGGGCAAAGATTAATAGAGAATG
TATGTGATGTGAAGTTGACACAGGAATGGGATGCCTGTGGAGAACAACTT
CGAAACCTCGTTGCCAAATTGAAGAACTTAGGTTCAAAATAA

protein sequence of Ggra3585.t1

>Ggra3585.t1 ID=Ggra3585.t1|Name=Ggra3585.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MNVVRSWSLSKLKRTVGRWVKRRKLGDRRLLLFSDPKPPRYSRNKRKSKE
ISTTNDEEAIIKTSERSSEVRTTVDGDNKLHSKVQTTQTKEHTPSPKKSK
VQPIDDTSQWMHYRDWRQPATFDAVADLETKLRNEKAAHGDLQDASNVLM
QAAVTTKLKILSNVRECLGEGRKKGIGESHTIDLTRLIRDQYERIHNEEE
KEIVVQATGGFQQQKLFLEGRDVTGSQKGSDATDQAVMFTVSFLNNWSAA
SLQFVYLADSLHTSGWWFSRLTLKSKSLKKLEKSLLDRRGSLCKYHERVW
CSEKNLIPLSGSDHWSLEIVKNLPAILNNLKGGCSEGLVGKNASITILDS
LGADSFHAGLCANFMLYLRACFPSNKKPPLHDLHKNIACNGLMFEIQKQR
ECGFFATYHAMMVARNWDILRRGNQKDLRVYLRSSYDNSPFAQYECLIQN
RLRIFLLEFIRNGGRVLQSSVFLWNCATPLTKRTWSKSEISPSHPKIRDT
GDGKTTGPLKADGNPRLNELTALVEEGQRLIENVCDVKLTQEWDACGEQL
RNLVAKLKNLGSK*

mRNA from alignment at tig00000850_pilon:83659..85413+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3585.t1 ID=Ggra3585.t1|Name=Ggra3585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1755bp|location=Sequence derived from alignment at tig00000850_pilon:83659..85413+ (Gracilaria gracilis GNS1m male)
ATGAATGTGGTTCGAAGCTGGTCCTTGTCAAAGCTGAAACGAACAGTGGG
GAGATGGGTGAAACGTCGGAAGCTTGGAGATCGACGTCTTTTGCTTTTCT
CTGATCCTAAACCTCCTCGGTATTCGAGAAACAAGAGGAAAAGCAAGGAA
ATAAGCACCACCAATGACGAAGAGGCCATCATAAAAACATCCGAGCGCAG
CTCTGAAGTGCGAACCACTGTAGACGGTGACAATAAACTGCACTCCAAAG
TGCAAACGACACAAACGAAAGAGCACACACCGTCGCCAAAGAAGAGTAAA
GTGCAACCAATTGATGACACTTCCCGTATCAAACTTCGGAGCGCCAAAGG
TATAACGTAGAAGCGTCGTTTTGCCTGTCTTTCACCAGAATGGATGCATT
ACCGAGACTGGAGACAGCCAGCCACATTCGACGCAGTCGCCGATCTGGAA
ACGAAATTGCGCAACGAAAAAGCAGCACATGGGGATCTCCAGGACGCTTC
GAATGTACTTATGCAGGCTGCAGTAACGACAAAACTCAAGATATTAAGCA
ATGTGCGAGAATGTTTGGGAGAGGGCCGCAAGAAGGGTATTGGGGAATCG
CACACAATCGATCTCACCCGCCTGATTAGAGACCAGTACGAAAGAATACA
CAATGAGGAAGAGAAGGAAATTGTTGTCCAAGCCACGGGAGGTTTTCAGC
AACAGAAGCTCTTCTTGGAGGGTAGAGATGTCACTGGCTCACAAAAAGGT
AGTGATGCAACAGATCAGGCAGTAATGTTCACTGTCTCTTTCCTCAACAA
CTGGAGTGCTGCCAGTCTTCAGTTCGTATACCTCGCAGACTCCCTGCATA
CATCTGGATGGTGGTTTTCACGTCTCACCTTGAAGTCAAAGTCTCTCAAG
AAATTGGAGAAATCTCTGCTAGATCGCAGGGGATCTCTGTGCAAGTACCA
CGAACGGGTTTGGTGCTCGGAAAAAAATTTGATTCCTTTGTCAGGAAGCG
ACCATTGGTCTCTGGAAATCGTGAAAAACCTGCCAGCCATATTGAATAAC
CTTAAAGGCGGTTGTTCTGAGGGTTTGGTTGGCAAAAACGCTTCAATTAC
CATTCTCGATAGTTTGGGGGCGGATTCTTTTCATGCTGGTCTATGTGCGA
ATTTCATGTTATATCTGAGAGCCTGCTTTCCTTCGAACAAGAAACCGCCT
TTACATGATCTGCACAAAAATATTGCCTGCAATGGTCTCATGTTCGAAAT
CCAAAAACAGCGAGAGTGTGGTTTCTTCGCAACGTACCATGCCATGATGG
TAGCGAGAAACTGGGACATCCTCCGAAGGGGTAACCAGAAAGACCTCCGT
GTCTATTTGCGTAGCAGTTACGATAACTCCCCGTTCGCGCAATATGAGTG
TCTCATTCAAAATCGTCTTCGTATATTCTTGCTGGAGTTTATCCGCAACG
GTGGCAGAGTGTTACAAAGTAGCGTGTTCCTATGGAATTGTGCTACTCCA
CTCACCAAGAGGACCTGGTCAAAGAGCGAGATCTCTCCAAGTCACCCTAA
AATTAGGGACACAGGCGACGGTAAAACTACAGGGCCACTCAAAGCTGATG
GAAACCCAAGACTCAATGAACTAACAGCACTCGTAGAGGAAGGGCAAAGA
TTAATAGAGAATGTATGTGATGTGAAGTTGACACAGGAATGGGATGCCTG
TGGAGAACAACTTCGAAACCTCGTTGCCAAATTGAAGAACTTAGGTTCAA
AATAA

Coding sequence (CDS) from alignment at tig00000850_pilon:83659..85413+

>Ggra3585.t1 ID=Ggra3585.t1|Name=Ggra3585.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1692bp|location=Sequence derived from alignment at tig00000850_pilon:83659..85413+ (Gracilaria gracilis GNS1m male)
ATGAATGTGGTTCGAAGCTGGTCCTTGTCAAAGCTGAAACGAACAGTGGG
GAGATGGGTGAAACGTCGGAAGCTTGGAGATCGACGTCTTTTGCTTTTCT
CTGATCCTAAACCTCCTCGGTATTCGAGAAACAAGAGGAAAAGCAAGGAA
ATAAGCACCACCAATGACGAAGAGGCCATCATAAAAACATCCGAGCGCAG
CTCTGAAGTGCGAACCACTGTAGACGGTGACAATAAACTGCACTCCAAAG
TGCAAACGACACAAACGAAAGAGCACACACCGTCGCCAAAGAAGAGTAAA
GTGCAACCAATTGATGACACTTCCCAATGGATGCATTACCGAGACTGGAG
ACAGCCAGCCACATTCGACGCAGTCGCCGATCTGGAAACGAAATTGCGCA
ACGAAAAAGCAGCACATGGGGATCTCCAGGACGCTTCGAATGTACTTATG
CAGGCTGCAGTAACGACAAAACTCAAGATATTAAGCAATGTGCGAGAATG
TTTGGGAGAGGGCCGCAAGAAGGGTATTGGGGAATCGCACACAATCGATC
TCACCCGCCTGATTAGAGACCAGTACGAAAGAATACACAATGAGGAAGAG
AAGGAAATTGTTGTCCAAGCCACGGGAGGTTTTCAGCAACAGAAGCTCTT
CTTGGAGGGTAGAGATGTCACTGGCTCACAAAAAGGTAGTGATGCAACAG
ATCAGGCAGTAATGTTCACTGTCTCTTTCCTCAACAACTGGAGTGCTGCC
AGTCTTCAGTTCGTATACCTCGCAGACTCCCTGCATACATCTGGATGGTG
GTTTTCACGTCTCACCTTGAAGTCAAAGTCTCTCAAGAAATTGGAGAAAT
CTCTGCTAGATCGCAGGGGATCTCTGTGCAAGTACCACGAACGGGTTTGG
TGCTCGGAAAAAAATTTGATTCCTTTGTCAGGAAGCGACCATTGGTCTCT
GGAAATCGTGAAAAACCTGCCAGCCATATTGAATAACCTTAAAGGCGGTT
GTTCTGAGGGTTTGGTTGGCAAAAACGCTTCAATTACCATTCTCGATAGT
TTGGGGGCGGATTCTTTTCATGCTGGTCTATGTGCGAATTTCATGTTATA
TCTGAGAGCCTGCTTTCCTTCGAACAAGAAACCGCCTTTACATGATCTGC
ACAAAAATATTGCCTGCAATGGTCTCATGTTCGAAATCCAAAAACAGCGA
GAGTGTGGTTTCTTCGCAACGTACCATGCCATGATGGTAGCGAGAAACTG
GGACATCCTCCGAAGGGGTAACCAGAAAGACCTCCGTGTCTATTTGCGTA
GCAGTTACGATAACTCCCCGTTCGCGCAATATGAGTGTCTCATTCAAAAT
CGTCTTCGTATATTCTTGCTGGAGTTTATCCGCAACGGTGGCAGAGTGTT
ACAAAGTAGCGTGTTCCTATGGAATTGTGCTACTCCACTCACCAAGAGGA
CCTGGTCAAAGAGCGAGATCTCTCCAAGTCACCCTAAAATTAGGGACACA
GGCGACGGTAAAACTACAGGGCCACTCAAAGCTGATGGAAACCCAAGACT
CAATGAACTAACAGCACTCGTAGAGGAAGGGCAAAGATTAATAGAGAATG
TATGTGATGTGAAGTTGACACAGGAATGGGATGCCTGTGGAGAACAACTT
CGAAACCTCGTTGCCAAATTGAAGAACTTAGGTTCAAAATAA