Ggra3573.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3573.t1
Unique NameGgra3573.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length625
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000864_piloncontigtig00000864_pilon:13516..15580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1280696.ATVY01000008_gene1962
Preferred namegalU
PFAMsNTP_transferase
Max annot lvl186801|Clostridia
KEGG rclassRC00002
KEGG koko:K00963
KEGG ReactionR00289
KEGG Pathwayko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130
KEGG ModuleM00129,M00361,M00362,M00549
Evalue1.33e-103
EggNOG OGsCOG0153@1|root,COG1210@1|root,COG0153@2|Bacteria,COG1210@2|Bacteria,1TQ24@1239|Firmicutes,25E5A@186801|Clostridia,4C0WH@830|Butyrivibrio
EC2.7.7.9
DescriptionGHMP kinases N terminal domain
COG categoryGM
BiGG ReactioniHN637.CLJU_RS02205
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3573Ggra3573Gracilaria gracilis GNS1m malegenetig00000864_pilon 13516..15580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3573.t1Ggra3573.t1Gracilaria gracilis GNS1m malepolypeptidetig00000864_pilon 13516..15580 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3573.t1.stop1Ggra3573.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000864_pilon 13516..13518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3573.t1.CDS1Ggra3573.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000864_pilon 13516..14249 -
Ggra3573.t1.CDS2Ggra3573.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000864_pilon 14350..14574 -
Ggra3573.t1.CDS3Ggra3573.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000864_pilon 14665..15580 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3573.t1.exon1Ggra3573.t1.exon1Gracilaria gracilis GNS1m maleexontig00000864_pilon 13516..14249 -
Ggra3573.t1.exon2Ggra3573.t1.exon2Gracilaria gracilis GNS1m maleexontig00000864_pilon 14350..14574 -
Ggra3573.t1.exon3Ggra3573.t1.exon3Gracilaria gracilis GNS1m maleexontig00000864_pilon 14665..15580 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3573.t1.intron1Ggra3573.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000864_pilon 14250..14349 -
Ggra3573.t1.intron2Ggra3573.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000864_pilon 14575..14664 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3573.t1.start1Ggra3573.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000864_pilon 15578..15580 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3573.t1 ID=Ggra3573.t1|Name=Ggra3573.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=625bp
MSSYQYELFVPGRLCLAGEHSDWAASYRQASLHATVGSALTIALNQGLYA
QVSRSSDLSLSSPLASDLIVARENLLTVAQSDSPWRYAAAVSYIIHTRFA
VSDAVCIRIVRETLPPRKGLSSSAAVCVLVARAYNVVYGLSLTEAGEMEI
AYQGERLTGSACGRMDQIVAIGPGRAAHMTFDGEHVSHKVLPDPKAPIHI
VVAQVGTKDTSKILRGLHGAYPNADTAEKVRLQKALGAENLSMIQTMNQA
IRDGDAQELGQLMTKAQATFDEAATPFCPEQLTAPNLHRVLQDADVLPLV
HGGKGVGSQGDGAVQFVAKNEGAAQLLLSILSDKLKTDPFIVTVGKLGSA
AISTRPVLHPQRPFSKQGKLQTAVIPAAGFVEQCAQAQIQRIIIVVSPGE
QESRVRDVFSPVSSELYKALKPHMRQYADRIANLGKLIEIDTQSNPNGFG
HAVSCAKLAEDEPFLLLLGDVAFEPGQSNKSCVLQVLEAYNQNPSRSVVG
VTPVATHEAGAYGVVKTRDEIRPNGERVAIEKMVEKPGAEEAKSLSCNDV
CNIILGPYAFTPLLMNMLREDVEANKQLNGEIQLTPAMSAVLEEEGLDAM
LLDGSAYDTGNAVDYRNTLSRLGV*
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spliced messenger RNA

>Ggra3573.t1 ID=Ggra3573.t1|Name=Ggra3573.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1875bp|location=Sequence derived from alignment at tig00000864_pilon:13516..15580- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCTACCAATACGAACTCTTCGTCCCAGGGCGTCTCTGCCTGGC
CGGTGAACATTCCGATTGGGCTGCGTCGTACCGCCAAGCCTCTCTCCACG
CTACAGTCGGTTCCGCTCTCACGATTGCTCTCAACCAGGGTCTGTATGCT
CAAGTATCGCGCTCATCCGATCTGTCACTTTCTTCGCCCTTGGCTTCCGA
CTTAATAGTCGCCCGTGAAAATCTTCTTACTGTCGCTCAAAGCGACTCAC
CCTGGCGGTATGCTGCAGCAGTTTCGTACATCATTCACACCCGTTTTGCT
GTGTCGGATGCAGTTTGTATTCGAATTGTGCGGGAGACATTACCACCAAG
AAAGGGGTTGAGTTCCTCCGCGGCTGTTTGTGTGCTTGTTGCACGCGCTT
ACAATGTTGTTTATGGACTCTCGTTGACAGAAGCCGGAGAGATGGAGATA
GCTTATCAGGGCGAGCGTCTAACGGGAAGTGCATGTGGACGAATGGATCA
AATCGTTGCGATAGGACCGGGTCGAGCGGCTCACATGACGTTTGACGGAG
AACATGTTTCCCACAAAGTGCTGCCAGATCCAAAAGCTCCCATTCACATT
GTAGTCGCCCAAGTAGGTACGAAGGATACCTCGAAAATTCTCCGTGGTTT
GCATGGGGCGTATCCGAACGCAGATACAGCTGAAAAGGTACGGCTCCAGA
AAGCGCTTGGAGCTGAGAATTTGAGCATGATACAGACAATGAACCAGGCT
ATAAGAGACGGGGACGCACAAGAGTTAGGGCAACTTATGACAAAAGCACA
AGCCACCTTCGACGAAGCTGCTACTCCATTCTGTCCTGAGCAACTTACTG
CCCCCAACCTGCATCGCGTTTTGCAGGATGCAGACGTTCTTCCTCTGGTT
CACGGTGGCAAAGGAGTGGGAAGCCAAGGCGATGGTGCGGTGCAATTTGT
GGCGAAGAATGAAGGCGCTGCGCAGCTCTTACTCTCCATTTTGTCAGACA
AGTTGAAGACAGACCCATTCATAGTAACGGTGGGAAAACTGGGTTCTGCT
GCGATCAGCACAAGGCCCGTGTTGCACCCTCAACGACCGTTTTCAAAACA
AGGCAAGCTGCAGACAGCCGTCATCCCCGCTGCAGGATTCGTTGAACAAT
GTGCCCAAGCGCAAATACAGAGAATCATTATAGTTGTCTCACCGGGAGAG
CAGGAAAGTCGGGTTCGCGATGTGTTTAGCCCGGTATCAAGCGAGCTGTA
CAAGGCACTCAAGCCACATATGCGGCAATACGCAGACCGTATCGCAAATC
TTGGCAAACTTATCGAGATCGATACTCAGTCGAATCCTAATGGGTTTGGT
CATGCTGTTTCCTGTGCCAAACTTGCAGAAGACGAACCCTTTCTGCTGTT
GCTAGGGGATGTGGCTTTTGAGCCAGGACAATCGAACAAGTCCTGTGTAC
TACAAGTTTTGGAAGCATACAATCAAAATCCTTCAAGGAGTGTTGTTGGA
GTGACGCCCGTAGCCACGCATGAAGCCGGAGCATATGGAGTCGTGAAGAC
TAGGGACGAAATACGACCGAATGGAGAGCGCGTAGCAATCGAGAAGATGG
TAGAGAAGCCAGGCGCTGAGGAGGCAAAATCGCTAAGTTGCAATGATGTG
TGTAACATCATACTGGGTCCCTACGCGTTCACCCCGCTGCTGATGAATAT
GTTACGCGAAGATGTTGAAGCTAATAAGCAATTGAATGGAGAGATCCAAT
TAACTCCCGCTATGAGTGCTGTGTTGGAAGAAGAAGGCTTGGATGCCATG
TTACTAGACGGCTCCGCGTATGACACCGGGAACGCTGTTGATTACAGGAA
CACGTTAAGTAGGTTGGGCGTTTGA
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protein sequence of Ggra3573.t1

>Ggra3573.t1 ID=Ggra3573.t1|Name=Ggra3573.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=625bp
MSSYQYELFVPGRLCLAGEHSDWAASYRQASLHATVGSALTIALNQGLYA
QVSRSSDLSLSSPLASDLIVARENLLTVAQSDSPWRYAAAVSYIIHTRFA
VSDAVCIRIVRETLPPRKGLSSSAAVCVLVARAYNVVYGLSLTEAGEMEI
AYQGERLTGSACGRMDQIVAIGPGRAAHMTFDGEHVSHKVLPDPKAPIHI
VVAQVGTKDTSKILRGLHGAYPNADTAEKVRLQKALGAENLSMIQTMNQA
IRDGDAQELGQLMTKAQATFDEAATPFCPEQLTAPNLHRVLQDADVLPLV
HGGKGVGSQGDGAVQFVAKNEGAAQLLLSILSDKLKTDPFIVTVGKLGSA
AISTRPVLHPQRPFSKQGKLQTAVIPAAGFVEQCAQAQIQRIIIVVSPGE
QESRVRDVFSPVSSELYKALKPHMRQYADRIANLGKLIEIDTQSNPNGFG
HAVSCAKLAEDEPFLLLLGDVAFEPGQSNKSCVLQVLEAYNQNPSRSVVG
VTPVATHEAGAYGVVKTRDEIRPNGERVAIEKMVEKPGAEEAKSLSCNDV
CNIILGPYAFTPLLMNMLREDVEANKQLNGEIQLTPAMSAVLEEEGLDAM
LLDGSAYDTGNAVDYRNTLSRLGV*
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mRNA from alignment at tig00000864_pilon:13516..15580-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3573.t1 ID=Ggra3573.t1|Name=Ggra3573.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2065bp|location=Sequence derived from alignment at tig00000864_pilon:13516..15580- (Gracilaria gracilis GNS1m male)
ATGTCTTCCTACCAATACGAACTCTTCGTCCCAGGGCGTCTCTGCCTGGC
CGGTGAACATTCCGATTGGGCTGCGTCGTACCGCCAAGCCTCTCTCCACG
CTACAGTCGGTTCCGCTCTCACGATTGCTCTCAACCAGGGTCTGTATGCT
CAAGTATCGCGCTCATCCGATCTGTCACTTTCTTCGCCCTTGGCTTCCGA
CTTAATAGTCGCCCGTGAAAATCTTCTTACTGTCGCTCAAAGCGACTCAC
CCTGGCGGTATGCTGCAGCAGTTTCGTACATCATTCACACCCGTTTTGCT
GTGTCGGATGCAGTTTGTATTCGAATTGTGCGGGAGACATTACCACCAAG
AAAGGGGTTGAGTTCCTCCGCGGCTGTTTGTGTGCTTGTTGCACGCGCTT
ACAATGTTGTTTATGGACTCTCGTTGACAGAAGCCGGAGAGATGGAGATA
GCTTATCAGGGCGAGCGTCTAACGGGAAGTGCATGTGGACGAATGGATCA
AATCGTTGCGATAGGACCGGGTCGAGCGGCTCACATGACGTTTGACGGAG
AACATGTTTCCCACAAAGTGCTGCCAGATCCAAAAGCTCCCATTCACATT
GTAGTCGCCCAAGTAGGTACGAAGGATACCTCGAAAATTCTCCGTGGTTT
GCATGGGGCGTATCCGAACGCAGATACAGCTGAAAAGGTACGGCTCCAGA
AAGCGCTTGGAGCTGAGAATTTGAGCATGATACAGACAATGAACCAGGCT
ATAAGAGACGGGGACGCACAAGAGTTAGGGCAACTTATGACAAAAGCACA
AGCCACCTTCGACGAAGCTGCTACTCCATTCTGTCCTGAGCAACTTACTG
CCCCCAACCTGCATCGCGTTTTGCAGGATGCAGACGTTCTTCCTCTGGTT
CACGGTGGCAAAGGAGGTACGTCGCGCCGGTGCACACTTCCTATATGCGG
TACCCTGTAACGTATACAATATCTAACTTTCTTTCTTTCTCGACCAACTT
CACCAGTGGGAAGCCAAGGCGATGGTGCGGTGCAATTTGTGGCGAAGAAT
GAAGGCGCTGCGCAGCTCTTACTCTCCATTTTGTCAGACAAGTTGAAGAC
AGACCCATTCATAGTAACGGTGGGAAAACTGGGTTCTGCTGCGATCAGCA
CAAGGCCCGTGTTGCACCCTCAACGACCGTTTTCAAAACAAGGCAAGCTG
CAGACAGCCGTCATCCCCGCTGCAGGATTCGGTACAAGATTATATCCTGC
ATCCAAGAGTATTCGAACCAAAGGCATTGTTCCCCATCATAGACTCTGAC
GGATTTGCAAAACCTCTTCTACTTCACTTAGTTGAACAATGTGCCCAAGC
GCAAATACAGAGAATCATTATAGTTGTCTCACCGGGAGAGCAGGAAAGTC
GGGTTCGCGATGTGTTTAGCCCGGTATCAAGCGAGCTGTACAAGGCACTC
AAGCCACATATGCGGCAATACGCAGACCGTATCGCAAATCTTGGCAAACT
TATCGAGATCGATACTCAGTCGAATCCTAATGGGTTTGGTCATGCTGTTT
CCTGTGCCAAACTTGCAGAAGACGAACCCTTTCTGCTGTTGCTAGGGGAT
GTGGCTTTTGAGCCAGGACAATCGAACAAGTCCTGTGTACTACAAGTTTT
GGAAGCATACAATCAAAATCCTTCAAGGAGTGTTGTTGGAGTGACGCCCG
TAGCCACGCATGAAGCCGGAGCATATGGAGTCGTGAAGACTAGGGACGAA
ATACGACCGAATGGAGAGCGCGTAGCAATCGAGAAGATGGTAGAGAAGCC
AGGCGCTGAGGAGGCAAAATCGCTAAGTTGCAATGATGTGTGTAACATCA
TACTGGGTCCCTACGCGTTCACCCCGCTGCTGATGAATATGTTACGCGAA
GATGTTGAAGCTAATAAGCAATTGAATGGAGAGATCCAATTAACTCCCGC
TATGAGTGCTGTGTTGGAAGAAGAAGGCTTGGATGCCATGTTACTAGACG
GCTCCGCGTATGACACCGGGAACGCTGTTGATTACAGGAACACGTTAAGT
AGGTTGGGCGTTTGA
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Coding sequence (CDS) from alignment at tig00000864_pilon:13516..15580-

>Ggra3573.t1 ID=Ggra3573.t1|Name=Ggra3573.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1875bp|location=Sequence derived from alignment at tig00000864_pilon:13516..15580- (Gracilaria gracilis GNS1m male)
ATGTCTTCCTACCAATACGAACTCTTCGTCCCAGGGCGTCTCTGCCTGGC
CGGTGAACATTCCGATTGGGCTGCGTCGTACCGCCAAGCCTCTCTCCACG
CTACAGTCGGTTCCGCTCTCACGATTGCTCTCAACCAGGGTCTGTATGCT
CAAGTATCGCGCTCATCCGATCTGTCACTTTCTTCGCCCTTGGCTTCCGA
CTTAATAGTCGCCCGTGAAAATCTTCTTACTGTCGCTCAAAGCGACTCAC
CCTGGCGGTATGCTGCAGCAGTTTCGTACATCATTCACACCCGTTTTGCT
GTGTCGGATGCAGTTTGTATTCGAATTGTGCGGGAGACATTACCACCAAG
AAAGGGGTTGAGTTCCTCCGCGGCTGTTTGTGTGCTTGTTGCACGCGCTT
ACAATGTTGTTTATGGACTCTCGTTGACAGAAGCCGGAGAGATGGAGATA
GCTTATCAGGGCGAGCGTCTAACGGGAAGTGCATGTGGACGAATGGATCA
AATCGTTGCGATAGGACCGGGTCGAGCGGCTCACATGACGTTTGACGGAG
AACATGTTTCCCACAAAGTGCTGCCAGATCCAAAAGCTCCCATTCACATT
GTAGTCGCCCAAGTAGGTACGAAGGATACCTCGAAAATTCTCCGTGGTTT
GCATGGGGCGTATCCGAACGCAGATACAGCTGAAAAGGTACGGCTCCAGA
AAGCGCTTGGAGCTGAGAATTTGAGCATGATACAGACAATGAACCAGGCT
ATAAGAGACGGGGACGCACAAGAGTTAGGGCAACTTATGACAAAAGCACA
AGCCACCTTCGACGAAGCTGCTACTCCATTCTGTCCTGAGCAACTTACTG
CCCCCAACCTGCATCGCGTTTTGCAGGATGCAGACGTTCTTCCTCTGGTT
CACGGTGGCAAAGGAGTGGGAAGCCAAGGCGATGGTGCGGTGCAATTTGT
GGCGAAGAATGAAGGCGCTGCGCAGCTCTTACTCTCCATTTTGTCAGACA
AGTTGAAGACAGACCCATTCATAGTAACGGTGGGAAAACTGGGTTCTGCT
GCGATCAGCACAAGGCCCGTGTTGCACCCTCAACGACCGTTTTCAAAACA
AGGCAAGCTGCAGACAGCCGTCATCCCCGCTGCAGGATTCGTTGAACAAT
GTGCCCAAGCGCAAATACAGAGAATCATTATAGTTGTCTCACCGGGAGAG
CAGGAAAGTCGGGTTCGCGATGTGTTTAGCCCGGTATCAAGCGAGCTGTA
CAAGGCACTCAAGCCACATATGCGGCAATACGCAGACCGTATCGCAAATC
TTGGCAAACTTATCGAGATCGATACTCAGTCGAATCCTAATGGGTTTGGT
CATGCTGTTTCCTGTGCCAAACTTGCAGAAGACGAACCCTTTCTGCTGTT
GCTAGGGGATGTGGCTTTTGAGCCAGGACAATCGAACAAGTCCTGTGTAC
TACAAGTTTTGGAAGCATACAATCAAAATCCTTCAAGGAGTGTTGTTGGA
GTGACGCCCGTAGCCACGCATGAAGCCGGAGCATATGGAGTCGTGAAGAC
TAGGGACGAAATACGACCGAATGGAGAGCGCGTAGCAATCGAGAAGATGG
TAGAGAAGCCAGGCGCTGAGGAGGCAAAATCGCTAAGTTGCAATGATGTG
TGTAACATCATACTGGGTCCCTACGCGTTCACCCCGCTGCTGATGAATAT
GTTACGCGAAGATGTTGAAGCTAATAAGCAATTGAATGGAGAGATCCAAT
TAACTCCCGCTATGAGTGCTGTGTTGGAAGAAGAAGGCTTGGATGCCATG
TTACTAGACGGCTCCGCGTATGACACCGGGAACGCTGTTGATTACAGGAA
CACGTTAAGTAGGTTGGGCGTTTGA
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