Ggra357.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra357.t1
Unique NameGgra357.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:139884..141077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog489825.LYNGBM3L_07500
PFAMsCalx-beta,DUF4114,Exo_endo_phos,GDPD,HemolysinCabind,PhoD,PhoD_N,Phytase,Phytase-like,SurE
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00017,RC00078,RC00425
KEGG koko:K01083,ko:K01113,ko:K01126
KEGG ReactionR01030,R01470,R03371,R04620
KEGG Pathwayko00562,ko00564,ko00790,ko01100,ko02020,map00562,map00564,map00790,map01100,map02020
KEGG ModuleM00126
Evalue2.14e-111
EggNOG OGsCOG2931@1|root,COG4222@1|root,COG2931@2|Bacteria,COG4222@2|Bacteria,1G00S@1117|Cyanobacteria,1H7VZ@1150|Oscillatoriales
EC3.1.3.1,3.1.3.8,3.1.4.46
Descriptionprotein conserved in bacteria
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra357Ggra357Gracilaria gracilis GNS1m malegenetig00000950_pilon 139884..141077 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra357.t1.start1Ggra357.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 139884..139886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra357.t1.CDS1Ggra357.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 139884..141077 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra357.t1.exon1Ggra357.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 139884..141077 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra357.t1.stop1Ggra357.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 141075..141077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra357.t1Ggra357.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 139884..141077 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra357.t1 ID=Ggra357.t1|Name=Ggra357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MNTVSAFFVALLFHTASSSQAHAECGADSPFKLERKTFLRVATFNAALNR
PNQGDLLEETKSGDGDPLRRVAATLQHIDADIVLVNEIDYDETGQTYENF
EAKYLQVPQTIYASESAVSYPYYFAAPSNTGILSGVDINGDGNVSLPADA
FGFGFFPGQFAFALFSRYPIISDQVRTFQNFLWKDMPDNLIPDSVYTDDV
LDVFRLTSKNHVDVPIQVPGGHVVHVLASHPTPPVFDSEADENGRRNADE
IRFWSDYITPGRDDYIHDDKGVAGGLARDSIFFICGDLNADPYDGDGRRE
AISTLLSRYNVIDPLPSSPGGKQSTNNLDTSTGDPSFHTAFFGPPVGNLR
VDYVLPSSNVDVMNAAVFWPAEGDKLFPLVNGTQTSDHRAVFVDVAV*
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spliced messenger RNA

>Ggra357.t1 ID=Ggra357.t1|Name=Ggra357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000950_pilon:139884..141077+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACAGTCTCAGCTTTCTTCGTGGCCTTACTCTTTCATACAGCGTC
ATCCTCTCAAGCACATGCAGAATGCGGCGCTGATTCTCCTTTCAAGCTTG
AACGCAAGACCTTTCTCCGTGTTGCGACCTTCAACGCCGCACTCAACCGC
CCTAACCAAGGTGACCTGTTGGAGGAAACCAAGTCGGGTGATGGCGACCC
ATTGCGTCGCGTGGCCGCCACTTTGCAGCACATAGATGCTGATATCGTAC
TTGTGAACGAGATTGACTATGACGAGACTGGTCAGACTTATGAGAACTTC
GAAGCCAAGTACCTGCAAGTTCCGCAAACCATTTATGCTTCTGAATCCGC
CGTTTCCTACCCGTACTACTTCGCTGCGCCATCAAACACCGGAATCCTGT
CTGGGGTCGATATCAATGGCGATGGTAACGTATCTCTACCTGCTGACGCG
TTTGGCTTTGGTTTCTTCCCGGGTCAGTTTGCTTTTGCTCTCTTTTCCAG
GTATCCAATTATCTCCGATCAAGTTCGAACCTTTCAGAACTTTCTTTGGA
AGGACATGCCGGATAACCTCATCCCGGATTCTGTTTACACTGATGATGTA
CTCGACGTGTTTCGTTTGACATCCAAGAATCACGTAGACGTTCCCATTCA
AGTTCCGGGAGGCCATGTGGTGCATGTGCTGGCATCTCATCCCACGCCTC
CGGTGTTTGATTCCGAAGCCGACGAGAACGGTCGTAGAAACGCAGACGAG
ATTCGATTTTGGTCTGATTACATCACGCCTGGGCGTGATGATTATATCCA
TGATGACAAGGGAGTCGCCGGTGGTCTTGCGCGAGATTCGATCTTCTTCA
TTTGCGGTGACCTGAACGCCGACCCTTATGATGGGGACGGTCGACGTGAA
GCAATCTCGACATTACTGTCCAGGTACAACGTTATTGATCCTCTGCCCTC
TAGTCCGGGAGGAAAGCAGTCGACCAACAATCTTGACACGTCTACAGGAG
ACCCCAGTTTTCATACTGCTTTCTTCGGTCCGCCCGTTGGCAATCTAAGG
GTGGACTACGTCCTACCATCCTCTAATGTTGACGTAATGAACGCAGCAGT
GTTCTGGCCAGCGGAGGGTGATAAATTGTTTCCACTGGTGAACGGGACAC
AAACGTCAGACCACCGAGCAGTTTTTGTAGACGTTGCCGTGTAG
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protein sequence of Ggra357.t1

>Ggra357.t1 ID=Ggra357.t1|Name=Ggra357.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MNTVSAFFVALLFHTASSSQAHAECGADSPFKLERKTFLRVATFNAALNR
PNQGDLLEETKSGDGDPLRRVAATLQHIDADIVLVNEIDYDETGQTYENF
EAKYLQVPQTIYASESAVSYPYYFAAPSNTGILSGVDINGDGNVSLPADA
FGFGFFPGQFAFALFSRYPIISDQVRTFQNFLWKDMPDNLIPDSVYTDDV
LDVFRLTSKNHVDVPIQVPGGHVVHVLASHPTPPVFDSEADENGRRNADE
IRFWSDYITPGRDDYIHDDKGVAGGLARDSIFFICGDLNADPYDGDGRRE
AISTLLSRYNVIDPLPSSPGGKQSTNNLDTSTGDPSFHTAFFGPPVGNLR
VDYVLPSSNVDVMNAAVFWPAEGDKLFPLVNGTQTSDHRAVFVDVAV*
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mRNA from alignment at tig00000950_pilon:139884..141077+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra357.t1 ID=Ggra357.t1|Name=Ggra357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000950_pilon:139884..141077+ (Gracilaria gracilis GNS1m male)
ATGAACACAGTCTCAGCTTTCTTCGTGGCCTTACTCTTTCATACAGCGTC
ATCCTCTCAAGCACATGCAGAATGCGGCGCTGATTCTCCTTTCAAGCTTG
AACGCAAGACCTTTCTCCGTGTTGCGACCTTCAACGCCGCACTCAACCGC
CCTAACCAAGGTGACCTGTTGGAGGAAACCAAGTCGGGTGATGGCGACCC
ATTGCGTCGCGTGGCCGCCACTTTGCAGCACATAGATGCTGATATCGTAC
TTGTGAACGAGATTGACTATGACGAGACTGGTCAGACTTATGAGAACTTC
GAAGCCAAGTACCTGCAAGTTCCGCAAACCATTTATGCTTCTGAATCCGC
CGTTTCCTACCCGTACTACTTCGCTGCGCCATCAAACACCGGAATCCTGT
CTGGGGTCGATATCAATGGCGATGGTAACGTATCTCTACCTGCTGACGCG
TTTGGCTTTGGTTTCTTCCCGGGTCAGTTTGCTTTTGCTCTCTTTTCCAG
GTATCCAATTATCTCCGATCAAGTTCGAACCTTTCAGAACTTTCTTTGGA
AGGACATGCCGGATAACCTCATCCCGGATTCTGTTTACACTGATGATGTA
CTCGACGTGTTTCGTTTGACATCCAAGAATCACGTAGACGTTCCCATTCA
AGTTCCGGGAGGCCATGTGGTGCATGTGCTGGCATCTCATCCCACGCCTC
CGGTGTTTGATTCCGAAGCCGACGAGAACGGTCGTAGAAACGCAGACGAG
ATTCGATTTTGGTCTGATTACATCACGCCTGGGCGTGATGATTATATCCA
TGATGACAAGGGAGTCGCCGGTGGTCTTGCGCGAGATTCGATCTTCTTCA
TTTGCGGTGACCTGAACGCCGACCCTTATGATGGGGACGGTCGACGTGAA
GCAATCTCGACATTACTGTCCAGGTACAACGTTATTGATCCTCTGCCCTC
TAGTCCGGGAGGAAAGCAGTCGACCAACAATCTTGACACGTCTACAGGAG
ACCCCAGTTTTCATACTGCTTTCTTCGGTCCGCCCGTTGGCAATCTAAGG
GTGGACTACGTCCTACCATCCTCTAATGTTGACGTAATGAACGCAGCAGT
GTTCTGGCCAGCGGAGGGTGATAAATTGTTTCCACTGGTGAACGGGACAC
AAACGTCAGACCACCGAGCAGTTTTTGTAGACGTTGCCGTGTAG
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Coding sequence (CDS) from alignment at tig00000950_pilon:139884..141077+

>Ggra357.t1 ID=Ggra357.t1|Name=Ggra357.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000950_pilon:139884..141077+ (Gracilaria gracilis GNS1m male)
ATGAACACAGTCTCAGCTTTCTTCGTGGCCTTACTCTTTCATACAGCGTC
ATCCTCTCAAGCACATGCAGAATGCGGCGCTGATTCTCCTTTCAAGCTTG
AACGCAAGACCTTTCTCCGTGTTGCGACCTTCAACGCCGCACTCAACCGC
CCTAACCAAGGTGACCTGTTGGAGGAAACCAAGTCGGGTGATGGCGACCC
ATTGCGTCGCGTGGCCGCCACTTTGCAGCACATAGATGCTGATATCGTAC
TTGTGAACGAGATTGACTATGACGAGACTGGTCAGACTTATGAGAACTTC
GAAGCCAAGTACCTGCAAGTTCCGCAAACCATTTATGCTTCTGAATCCGC
CGTTTCCTACCCGTACTACTTCGCTGCGCCATCAAACACCGGAATCCTGT
CTGGGGTCGATATCAATGGCGATGGTAACGTATCTCTACCTGCTGACGCG
TTTGGCTTTGGTTTCTTCCCGGGTCAGTTTGCTTTTGCTCTCTTTTCCAG
GTATCCAATTATCTCCGATCAAGTTCGAACCTTTCAGAACTTTCTTTGGA
AGGACATGCCGGATAACCTCATCCCGGATTCTGTTTACACTGATGATGTA
CTCGACGTGTTTCGTTTGACATCCAAGAATCACGTAGACGTTCCCATTCA
AGTTCCGGGAGGCCATGTGGTGCATGTGCTGGCATCTCATCCCACGCCTC
CGGTGTTTGATTCCGAAGCCGACGAGAACGGTCGTAGAAACGCAGACGAG
ATTCGATTTTGGTCTGATTACATCACGCCTGGGCGTGATGATTATATCCA
TGATGACAAGGGAGTCGCCGGTGGTCTTGCGCGAGATTCGATCTTCTTCA
TTTGCGGTGACCTGAACGCCGACCCTTATGATGGGGACGGTCGACGTGAA
GCAATCTCGACATTACTGTCCAGGTACAACGTTATTGATCCTCTGCCCTC
TAGTCCGGGAGGAAAGCAGTCGACCAACAATCTTGACACGTCTACAGGAG
ACCCCAGTTTTCATACTGCTTTCTTCGGTCCGCCCGTTGGCAATCTAAGG
GTGGACTACGTCCTACCATCCTCTAATGTTGACGTAATGAACGCAGCAGT
GTTCTGGCCAGCGGAGGGTGATAAATTGTTTCCACTGGTGAACGGGACAC
AAACGTCAGACCACCGAGCAGTTTTTGTAGACGTTGCCGTGTAG
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