Ggra3569.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3569.t1
Unique NameGgra3569.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000864_piloncontigtig00000864_pilon:5624..7021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8049.ENSGMOP00000004976
Preferred nameRPGR
PFAMsRCC1
Max annot lvl33208|Metazoa
KEGG koko:K19607
GOsGO:0001654,GO:0001750,GO:0001754,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007423,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009887,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0031503,GO:0031514,GO:0032391,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0035869,GO:0036064,GO:0036126,GO:0042073,GO:0042461,GO:0042462,GO:0042886,GO:0042995,GO:0043005,GO:0043010,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048592,GO:0048593,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060041,GO:0060042,GO:0060271,GO:0070727,GO:0070925,GO:0071214,GO:0071478,GO:0071482,GO:0071702,GO:0071705,GO:0071840,GO:0090596,GO:0097223,GO:0097458,GO:0097729,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0104004,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Evalue5.17e-13
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota,39QZ0@33154|Opisthokonta,3BAVI@33208|Metazoa,3CYC7@33213|Bilateria,4839T@7711|Chordata,4906U@7742|Vertebrata,49VV5@7898|Actinopterygii
Descriptionretinitis pigmentosa GTPase
COG categoryDZ
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3569Ggra3569Gracilaria gracilis GNS1m malegenetig00000864_pilon 5624..7021 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3569.t1.stop1Ggra3569.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000864_pilon 5624..5626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3569.t1.CDS1Ggra3569.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000864_pilon 5624..7021 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3569.t1.exon1Ggra3569.t1.exon1Gracilaria gracilis GNS1m maleexontig00000864_pilon 5624..7021 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3569.t1.start1Ggra3569.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000864_pilon 7019..7021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3569.t1Ggra3569.t1Gracilaria gracilis GNS1m malepolypeptidetig00000864_pilon 5624..7021 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3569.t1 ID=Ggra3569.t1|Name=Ggra3569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=466bp
MGSYPAPLPNGLAIFTVLPQHLVEHLLYCCDLTASDLSALKSAALVENVQ
SLAYATEVAAAALVYAHPNGKALVDNKLSSETWISLLRYLQRLDGAAAPT
GPTEVWSCGRNDLGQGVRPDHNDQNSLTSTYRVASEAFEFERPPANLILI
SAGAHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVIDLKWARVA
QVACGLGHTVVLTGQGLVLVTGANEFGQLGLGNCVQQPRFSKLELLPARM
IAAGNAHTVVLLEDGTAWGTGDNSRGQLGGRRGGGRDKFAPIGCFGRKVV
RVACGSDTTMLLTVDNMVLVTGKRHGGLSVIGGLGMSRVTHLSVGEGFAV
ASTDESEVAVSIHRKRFHVSDELLHISAASVSAGLSHYAITTDDGCAFAT
GTNTFGQIAAGEMGLTIEGSQNARVIRPHRVSLSRVQIPKGYRALQSATG
MFHTLYLLEKESPCT*
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spliced messenger RNA

>Ggra3569.t1 ID=Ggra3569.t1|Name=Ggra3569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000864_pilon:5624..7021- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCTTACCCGGCGCCGTTGCCAAACGGTCTCGCAATTTTTACGGT
ACTTCCACAACATCTTGTTGAGCATCTGTTGTACTGTTGCGACTTGACTG
CGAGTGATCTCTCGGCTCTCAAAAGTGCAGCTTTGGTAGAGAACGTACAA
TCTCTTGCGTATGCAACCGAAGTAGCAGCAGCAGCTCTAGTGTATGCACA
CCCAAACGGTAAAGCCCTGGTTGACAATAAGCTTTCTTCAGAAACTTGGA
TTTCATTGCTGCGCTATTTGCAACGACTGGATGGAGCTGCCGCACCTACG
GGACCCACAGAAGTATGGAGCTGCGGTCGAAACGATCTGGGACAGGGAGT
CAGACCGGATCACAATGATCAAAACTCTCTCACTTCCACATACAGAGTGG
CTTCTGAAGCATTCGAATTTGAACGACCACCCGCGAACCTAATCCTAATC
AGTGCGGGAGCTCATCATTCTGCCGCAGTTTCTGAACTTGGTACACTACA
TGTCGCAGGAGCCAACCATAGAGGGCAATTAGGACTTGGTGACTTATCAC
TCCGCTCTGCATGGACGCCGGTTATAGACCTCAAGTGGGCGAGAGTCGCG
CAGGTGGCCTGCGGACTTGGACACACAGTGGTTCTCACTGGCCAAGGGCT
TGTTCTCGTCACAGGAGCCAACGAATTCGGGCAACTCGGGCTTGGCAACT
GTGTGCAGCAGCCACGGTTCTCGAAGCTGGAACTGTTGCCAGCACGTATG
ATTGCGGCTGGAAATGCTCACACGGTTGTGTTGCTAGAGGACGGCACTGC
GTGGGGGACTGGAGATAATTCAAGAGGACAACTTGGAGGGAGACGAGGTG
GAGGAAGGGACAAATTTGCACCCATTGGCTGTTTTGGCAGAAAGGTTGTG
CGAGTTGCTTGTGGTTCGGATACCACAATGCTTTTAACGGTTGATAATAT
GGTATTGGTAACTGGAAAGCGCCATGGTGGTTTGAGCGTGATCGGTGGGT
TGGGAATGAGCCGTGTAACACATTTGTCTGTCGGGGAAGGGTTTGCCGTT
GCGAGTACTGATGAAAGCGAAGTCGCCGTAAGTATTCATCGAAAGCGATT
TCATGTATCTGATGAGCTGCTTCACATAAGTGCGGCGTCGGTTAGTGCAG
GTCTCTCTCATTATGCTATCACTACTGATGATGGATGTGCTTTTGCAACA
GGTACAAACACTTTCGGGCAGATTGCTGCTGGTGAAATGGGACTTACAAT
CGAAGGAAGTCAAAATGCCCGTGTAATCAGGCCCCATCGGGTTTCTTTGT
CACGAGTTCAAATTCCGAAAGGATATAGGGCATTGCAGTCTGCGACAGGA
ATGTTCCATACTTTGTATCTTCTCGAAAAGGAATCACCATGTACATAA
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protein sequence of Ggra3569.t1

>Ggra3569.t1 ID=Ggra3569.t1|Name=Ggra3569.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=466bp
MGSYPAPLPNGLAIFTVLPQHLVEHLLYCCDLTASDLSALKSAALVENVQ
SLAYATEVAAAALVYAHPNGKALVDNKLSSETWISLLRYLQRLDGAAAPT
GPTEVWSCGRNDLGQGVRPDHNDQNSLTSTYRVASEAFEFERPPANLILI
SAGAHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVIDLKWARVA
QVACGLGHTVVLTGQGLVLVTGANEFGQLGLGNCVQQPRFSKLELLPARM
IAAGNAHTVVLLEDGTAWGTGDNSRGQLGGRRGGGRDKFAPIGCFGRKVV
RVACGSDTTMLLTVDNMVLVTGKRHGGLSVIGGLGMSRVTHLSVGEGFAV
ASTDESEVAVSIHRKRFHVSDELLHISAASVSAGLSHYAITTDDGCAFAT
GTNTFGQIAAGEMGLTIEGSQNARVIRPHRVSLSRVQIPKGYRALQSATG
MFHTLYLLEKESPCT*
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mRNA from alignment at tig00000864_pilon:5624..7021-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3569.t1 ID=Ggra3569.t1|Name=Ggra3569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000864_pilon:5624..7021- (Gracilaria gracilis GNS1m male)
ATGGGTTCTTACCCGGCGCCGTTGCCAAACGGTCTCGCAATTTTTACGGT
ACTTCCACAACATCTTGTTGAGCATCTGTTGTACTGTTGCGACTTGACTG
CGAGTGATCTCTCGGCTCTCAAAAGTGCAGCTTTGGTAGAGAACGTACAA
TCTCTTGCGTATGCAACCGAAGTAGCAGCAGCAGCTCTAGTGTATGCACA
CCCAAACGGTAAAGCCCTGGTTGACAATAAGCTTTCTTCAGAAACTTGGA
TTTCATTGCTGCGCTATTTGCAACGACTGGATGGAGCTGCCGCACCTACG
GGACCCACAGAAGTATGGAGCTGCGGTCGAAACGATCTGGGACAGGGAGT
CAGACCGGATCACAATGATCAAAACTCTCTCACTTCCACATACAGAGTGG
CTTCTGAAGCATTCGAATTTGAACGACCACCCGCGAACCTAATCCTAATC
AGTGCGGGAGCTCATCATTCTGCCGCAGTTTCTGAACTTGGTACACTACA
TGTCGCAGGAGCCAACCATAGAGGGCAATTAGGACTTGGTGACTTATCAC
TCCGCTCTGCATGGACGCCGGTTATAGACCTCAAGTGGGCGAGAGTCGCG
CAGGTGGCCTGCGGACTTGGACACACAGTGGTTCTCACTGGCCAAGGGCT
TGTTCTCGTCACAGGAGCCAACGAATTCGGGCAACTCGGGCTTGGCAACT
GTGTGCAGCAGCCACGGTTCTCGAAGCTGGAACTGTTGCCAGCACGTATG
ATTGCGGCTGGAAATGCTCACACGGTTGTGTTGCTAGAGGACGGCACTGC
GTGGGGGACTGGAGATAATTCAAGAGGACAACTTGGAGGGAGACGAGGTG
GAGGAAGGGACAAATTTGCACCCATTGGCTGTTTTGGCAGAAAGGTTGTG
CGAGTTGCTTGTGGTTCGGATACCACAATGCTTTTAACGGTTGATAATAT
GGTATTGGTAACTGGAAAGCGCCATGGTGGTTTGAGCGTGATCGGTGGGT
TGGGAATGAGCCGTGTAACACATTTGTCTGTCGGGGAAGGGTTTGCCGTT
GCGAGTACTGATGAAAGCGAAGTCGCCGTAAGTATTCATCGAAAGCGATT
TCATGTATCTGATGAGCTGCTTCACATAAGTGCGGCGTCGGTTAGTGCAG
GTCTCTCTCATTATGCTATCACTACTGATGATGGATGTGCTTTTGCAACA
GGTACAAACACTTTCGGGCAGATTGCTGCTGGTGAAATGGGACTTACAAT
CGAAGGAAGTCAAAATGCCCGTGTAATCAGGCCCCATCGGGTTTCTTTGT
CACGAGTTCAAATTCCGAAAGGATATAGGGCATTGCAGTCTGCGACAGGA
ATGTTCCATACTTTGTATCTTCTCGAAAAGGAATCACCATGTACATAA
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Coding sequence (CDS) from alignment at tig00000864_pilon:5624..7021-

>Ggra3569.t1 ID=Ggra3569.t1|Name=Ggra3569.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1398bp|location=Sequence derived from alignment at tig00000864_pilon:5624..7021- (Gracilaria gracilis GNS1m male)
ATGGGTTCTTACCCGGCGCCGTTGCCAAACGGTCTCGCAATTTTTACGGT
ACTTCCACAACATCTTGTTGAGCATCTGTTGTACTGTTGCGACTTGACTG
CGAGTGATCTCTCGGCTCTCAAAAGTGCAGCTTTGGTAGAGAACGTACAA
TCTCTTGCGTATGCAACCGAAGTAGCAGCAGCAGCTCTAGTGTATGCACA
CCCAAACGGTAAAGCCCTGGTTGACAATAAGCTTTCTTCAGAAACTTGGA
TTTCATTGCTGCGCTATTTGCAACGACTGGATGGAGCTGCCGCACCTACG
GGACCCACAGAAGTATGGAGCTGCGGTCGAAACGATCTGGGACAGGGAGT
CAGACCGGATCACAATGATCAAAACTCTCTCACTTCCACATACAGAGTGG
CTTCTGAAGCATTCGAATTTGAACGACCACCCGCGAACCTAATCCTAATC
AGTGCGGGAGCTCATCATTCTGCCGCAGTTTCTGAACTTGGTACACTACA
TGTCGCAGGAGCCAACCATAGAGGGCAATTAGGACTTGGTGACTTATCAC
TCCGCTCTGCATGGACGCCGGTTATAGACCTCAAGTGGGCGAGAGTCGCG
CAGGTGGCCTGCGGACTTGGACACACAGTGGTTCTCACTGGCCAAGGGCT
TGTTCTCGTCACAGGAGCCAACGAATTCGGGCAACTCGGGCTTGGCAACT
GTGTGCAGCAGCCACGGTTCTCGAAGCTGGAACTGTTGCCAGCACGTATG
ATTGCGGCTGGAAATGCTCACACGGTTGTGTTGCTAGAGGACGGCACTGC
GTGGGGGACTGGAGATAATTCAAGAGGACAACTTGGAGGGAGACGAGGTG
GAGGAAGGGACAAATTTGCACCCATTGGCTGTTTTGGCAGAAAGGTTGTG
CGAGTTGCTTGTGGTTCGGATACCACAATGCTTTTAACGGTTGATAATAT
GGTATTGGTAACTGGAAAGCGCCATGGTGGTTTGAGCGTGATCGGTGGGT
TGGGAATGAGCCGTGTAACACATTTGTCTGTCGGGGAAGGGTTTGCCGTT
GCGAGTACTGATGAAAGCGAAGTCGCCGTAAGTATTCATCGAAAGCGATT
TCATGTATCTGATGAGCTGCTTCACATAAGTGCGGCGTCGGTTAGTGCAG
GTCTCTCTCATTATGCTATCACTACTGATGATGGATGTGCTTTTGCAACA
GGTACAAACACTTTCGGGCAGATTGCTGCTGGTGAAATGGGACTTACAAT
CGAAGGAAGTCAAAATGCCCGTGTAATCAGGCCCCATCGGGTTTCTTTGT
CACGAGTTCAAATTCCGAAAGGATATAGGGCATTGCAGTCTGCGACAGGA
ATGTTCCATACTTTGTATCTTCTCGAAAAGGAATCACCATGTACATAA
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