Ggra3557.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3557.t1
Unique NameGgra3557.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:965298..966371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3557Ggra3557Gracilaria gracilis GNS1m malegenetig00000059_pilon 965298..966371 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3557.t1.start1Ggra3557.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 965298..965300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3557.t1.CDS1Ggra3557.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 965298..966371 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3557.t1.exon1Ggra3557.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 965298..966371 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3557.t1.stop1Ggra3557.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 966369..966371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3557.t1Ggra3557.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 965298..966371 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3557.t1 ID=Ggra3557.t1|Name=Ggra3557.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MAWWLRRFSPPSRTPSPSPSPSPCTTMMAPDSADVPAAMTALFLTKRSKR
SKRHFNVLAGSVPVPPTADTHLLVEVKAAAVGARDVAVCRSLRALPGKRH
AQRAPVPGCALAGVVRRAPPHSPFKPGHAVAAVTRFGGAFGAYAALKPAE
CWSTTLSFADAAATAGAASAAFQAVSAAGVRAGDTVAVAGVLTAAGALIA
QTCRLVYGARVVAGVHGAQQLHAASKYADVVVDRNLEKVTSKIANIRIDA
AFDVEGRLEQLCRIVKKGAIVIRVISSAERVCEKQQRRVRHLCRSNNITL
RRIEGCIDASAVQSTKSLLHTLQLSAPSGPAFGLKQWGPALHTAEQGVHV
GAVLLLH*
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spliced messenger RNA

>Ggra3557.t1 ID=Ggra3557.t1|Name=Ggra3557.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000059_pilon:965298..966371+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGTGGCTGCGTCGCTTCTCCCCACCGTCCCGCAccccgtcccc
gtccccgtccccgtcgccgtGCACCACCATGATGGCGCCTGACTCCGCCG
ACGTGCCGGCCGCCATGACGGCGCTCTTCCTCACCAAGCGCTCCAAGCGC
TCCAAGCGCCACTTCAACGTGCTGGCCGGCTCCGTTCCCGTGCCGCCCAC
CGCCGACACCCACCTGCTGGTGGAGGTCAAGGCCGCCGCCGTCGgcgcgc
gcgacgtcgctgtctgccgctcgttgcgcgcgctgccgggcaagcgtcac
gcgcagcgcgcgcccgtgccgggctgtgcgctggcgggcgtcgtgcgtcg
cgcgccgccgcactcgcCCTTCAAGCCCGGACACGCCGTGGCTGCCGTCA
CCCGCTTCGGCGGCGCATTTGGCGCATACGCCGCCTTGAAGCCCGCCGAG
TGCTGGAGTACCACCCTGTCGTTCGCGGACGCTGCCGCCACTGCTGGCGC
TGCTTCCGCCGCCTTTCAGGCTGTCAGTGCGGCTGGCGTGCGCGCTGGCG
ATACTGTGGCCGTTGCGGGCGTGCTTACTGCCGCCGGCGCGCTCATTGCC
CAGACTTGTCGTTTGGTTTACGGCGCGCGCGTTGTGGCGGGTGTGCATGG
CGCACAGCAGCTGCATGCCGCCTCCAAGTATGCGGACGTTGTTGTGGACC
GCAACTTGGAGAAGGTTACCTCCAAGATTGCCAACATTCGTATAGACGCC
GCCTTTGACGTGGAGGGCCGACTGGAGCAGCTGTGTCGCATTGTGAAGAA
AGGCGCCATCGTCATTCGCGTCATTTCGTCGGCTGAGCGTGTGTGTGAAA
AGCAGCAGAGACGTGTGCGTCACTTGTGTCGTAGCAACAACATAACACTT
CGTCGAATTGAAGGCTGTATAGATGCAAGCGCTGTGCAAAGTACCAAGAG
TCTGTTGCATACGCTTCAACTATCCGCACCGAGTGGCCCTGCTTTCGGCC
TCAAACAATGGGGGCCTGCGCTGCACACCGCAGAACAAGGTGTTCATGTC
GGCGCTGTGCTGTTGCTTCACTAA
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protein sequence of Ggra3557.t1

>Ggra3557.t1 ID=Ggra3557.t1|Name=Ggra3557.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MAWWLRRFSPPSRTPSPSPSPSPCTTMMAPDSADVPAAMTALFLTKRSKR
SKRHFNVLAGSVPVPPTADTHLLVEVKAAAVGARDVAVCRSLRALPGKRH
AQRAPVPGCALAGVVRRAPPHSPFKPGHAVAAVTRFGGAFGAYAALKPAE
CWSTTLSFADAAATAGAASAAFQAVSAAGVRAGDTVAVAGVLTAAGALIA
QTCRLVYGARVVAGVHGAQQLHAASKYADVVVDRNLEKVTSKIANIRIDA
AFDVEGRLEQLCRIVKKGAIVIRVISSAERVCEKQQRRVRHLCRSNNITL
RRIEGCIDASAVQSTKSLLHTLQLSAPSGPAFGLKQWGPALHTAEQGVHV
GAVLLLH*
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mRNA from alignment at tig00000059_pilon:965298..966371+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3557.t1 ID=Ggra3557.t1|Name=Ggra3557.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000059_pilon:965298..966371+ (Gracilaria gracilis GNS1m male)
ATGGCGTGGTGGCTGCGTCGCTTCTCCCCACCGTCCCGCAccccgtcccc
gtccccgtccccgtcgccgtGCACCACCATGATGGCGCCTGACTCCGCCG
ACGTGCCGGCCGCCATGACGGCGCTCTTCCTCACCAAGCGCTCCAAGCGC
TCCAAGCGCCACTTCAACGTGCTGGCCGGCTCCGTTCCCGTGCCGCCCAC
CGCCGACACCCACCTGCTGGTGGAGGTCAAGGCCGCCGCCGTCGgcgcgc
gcgacgtcgctgtctgccgctcgttgcgcgcgctgccgggcaagcgtcac
gcgcagcgcgcgcccgtgccgggctgtgcgctggcgggcgtcgtgcgtcg
cgcgccgccgcactcgcCCTTCAAGCCCGGACACGCCGTGGCTGCCGTCA
CCCGCTTCGGCGGCGCATTTGGCGCATACGCCGCCTTGAAGCCCGCCGAG
TGCTGGAGTACCACCCTGTCGTTCGCGGACGCTGCCGCCACTGCTGGCGC
TGCTTCCGCCGCCTTTCAGGCTGTCAGTGCGGCTGGCGTGCGCGCTGGCG
ATACTGTGGCCGTTGCGGGCGTGCTTACTGCCGCCGGCGCGCTCATTGCC
CAGACTTGTCGTTTGGTTTACGGCGCGCGCGTTGTGGCGGGTGTGCATGG
CGCACAGCAGCTGCATGCCGCCTCCAAGTATGCGGACGTTGTTGTGGACC
GCAACTTGGAGAAGGTTACCTCCAAGATTGCCAACATTCGTATAGACGCC
GCCTTTGACGTGGAGGGCCGACTGGAGCAGCTGTGTCGCATTGTGAAGAA
AGGCGCCATCGTCATTCGCGTCATTTCGTCGGCTGAGCGTGTGTGTGAAA
AGCAGCAGAGACGTGTGCGTCACTTGTGTCGTAGCAACAACATAACACTT
CGTCGAATTGAAGGCTGTATAGATGCAAGCGCTGTGCAAAGTACCAAGAG
TCTGTTGCATACGCTTCAACTATCCGCACCGAGTGGCCCTGCTTTCGGCC
TCAAACAATGGGGGCCTGCGCTGCACACCGCAGAACAAGGTGTTCATGTC
GGCGCTGTGCTGTTGCTTCACTAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:965298..966371+

>Ggra3557.t1 ID=Ggra3557.t1|Name=Ggra3557.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000059_pilon:965298..966371+ (Gracilaria gracilis GNS1m male)
ATGGCGTGGTGGCTGCGTCGCTTCTCCCCACCGTCCCGCAccccgtcccc
gtccccgtccccgtcgccgtGCACCACCATGATGGCGCCTGACTCCGCCG
ACGTGCCGGCCGCCATGACGGCGCTCTTCCTCACCAAGCGCTCCAAGCGC
TCCAAGCGCCACTTCAACGTGCTGGCCGGCTCCGTTCCCGTGCCGCCCAC
CGCCGACACCCACCTGCTGGTGGAGGTCAAGGCCGCCGCCGTCGgcgcgc
gcgacgtcgctgtctgccgctcgttgcgcgcgctgccgggcaagcgtcac
gcgcagcgcgcgcccgtgccgggctgtgcgctggcgggcgtcgtgcgtcg
cgcgccgccgcactcgcCCTTCAAGCCCGGACACGCCGTGGCTGCCGTCA
CCCGCTTCGGCGGCGCATTTGGCGCATACGCCGCCTTGAAGCCCGCCGAG
TGCTGGAGTACCACCCTGTCGTTCGCGGACGCTGCCGCCACTGCTGGCGC
TGCTTCCGCCGCCTTTCAGGCTGTCAGTGCGGCTGGCGTGCGCGCTGGCG
ATACTGTGGCCGTTGCGGGCGTGCTTACTGCCGCCGGCGCGCTCATTGCC
CAGACTTGTCGTTTGGTTTACGGCGCGCGCGTTGTGGCGGGTGTGCATGG
CGCACAGCAGCTGCATGCCGCCTCCAAGTATGCGGACGTTGTTGTGGACC
GCAACTTGGAGAAGGTTACCTCCAAGATTGCCAACATTCGTATAGACGCC
GCCTTTGACGTGGAGGGCCGACTGGAGCAGCTGTGTCGCATTGTGAAGAA
AGGCGCCATCGTCATTCGCGTCATTTCGTCGGCTGAGCGTGTGTGTGAAA
AGCAGCAGAGACGTGTGCGTCACTTGTGTCGTAGCAACAACATAACACTT
CGTCGAATTGAAGGCTGTATAGATGCAAGCGCTGTGCAAAGTACCAAGAG
TCTGTTGCATACGCTTCAACTATCCGCACCGAGTGGCCCTGCTTTCGGCC
TCAAACAATGGGGGCCTGCGCTGCACACCGCAGAACAAGGTGTTCATGTC
GGCGCTGTGCTGTTGCTTCACTAA
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