Ggra3555.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3555.t1
Unique NameGgra3555.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:955744..956424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3555Ggra3555Gracilaria gracilis GNS1m malegenetig00000059_pilon 955744..956424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3555.t1Ggra3555.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 955744..956424 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3555.t1.start1Ggra3555.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 955744..955746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3555.t1.CDS1Ggra3555.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 955744..956231 +
Ggra3555.t1.CDS2Ggra3555.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 956299..956316 +
Ggra3555.t1.CDS3Ggra3555.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000059_pilon 956415..956424 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3555.t1.exon1Ggra3555.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 955744..956231 +
Ggra3555.t1.exon2Ggra3555.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 956299..956316 +
Ggra3555.t1.exon3Ggra3555.t1.exon3Gracilaria gracilis GNS1m maleexontig00000059_pilon 956415..956424 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3555.t1.intron1Ggra3555.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 956232..956298 +
Ggra3555.t1.intron2Ggra3555.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000059_pilon 956317..956414 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3555.t1.stop1Ggra3555.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 956422..956424 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3555.t1 ID=Ggra3555.t1|Name=Ggra3555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=172bp
MDAYSTTHMGERYIPILPRTSSHAHYNKRCETCSASHDGSFGAGRFCSSR
CARTVGGLAHRKKRLMERECKQRHAVQKRLSNKRLRAAVVSYKNDCTLDE
RLRVNCVLPVRIAHGVEAVAPIVAAAPSHMGEYAPSVCTNSTAHGAATAD
TAVDSTTSFRSPNLRALTCEG*
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spliced messenger RNA

>Ggra3555.t1 ID=Ggra3555.t1|Name=Ggra3555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp|location=Sequence derived from alignment at tig00000059_pilon:955744..956424+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCGTACAGCACGACGCACATGGGCGAACGGTACATCCCGATCTT
GCCGCGAACGTCGTCGCACGCGCACTACAACAAACGGTGCGAGACGTGCT
CTGCCTCGCACGACGGCTCGTTTGGAGCGGGGCGCTTCTGCTCGTCGCGA
TGCGCGCGAACGGTGGGCGGACTGGCGCACCGCAAGAAGCGGCTGATGGA
ACGCGAGTGCAAGCAGCGCCACGCCGTGCAGAAGAGATTGAGCAACAAGA
GGCTGCGCGCGGCCGTGGTGTCGTACAAGAACGACTGCACGCTGGACGAG
CGGCTGCGCGTGAACTGTGTGCTTCCGGTGCGAATTGCGCACGGCGTGGA
GGCGGTGGCGCCCATTGTGGCGGCAGCGCCGTCGCACATGGGCGAGTACG
CGCCGAGCGTGTGCACCAACAGCACTGCGCATGGAGCGGCGACGGCCGAC
ACAGCGGTGGACTCTACGACGTCGTTCCGATCACCAAATTTGCGCGCACT
AACTTGCGAAGGGTAA
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protein sequence of Ggra3555.t1

>Ggra3555.t1 ID=Ggra3555.t1|Name=Ggra3555.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=172bp
MDAYSTTHMGERYIPILPRTSSHAHYNKRCETCSASHDGSFGAGRFCSSR
CARTVGGLAHRKKRLMERECKQRHAVQKRLSNKRLRAAVVSYKNDCTLDE
RLRVNCVLPVRIAHGVEAVAPIVAAAPSHMGEYAPSVCTNSTAHGAATAD
TAVDSTTSFRSPNLRALTCEG*
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mRNA from alignment at tig00000059_pilon:955744..956424+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3555.t1 ID=Ggra3555.t1|Name=Ggra3555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000059_pilon:955744..956424+ (Gracilaria gracilis GNS1m male)
ATGGACGCGTACAGCACGACGCACATGGGCGAACGGTACATCCCGATCTT
GCCGCGAACGTCGTCGCACGCGCACTACAACAAACGGTGCGAGACGTGCT
CTGCCTCGCACGACGGCTCGTTTGGAGCGGGGCGCTTCTGCTCGTCGCGA
TGCGCGCGAACGGTGGGCGGACTGGCGCACCGCAAGAAGCGGCTGATGGA
ACGCGAGTGCAAGCAGCGCCACGCCGTGCAGAAGAGATTGAGCAACAAGA
GGCTGCGCGCGGCCGTGGTGTCGTACAAGAACGACTGCACGCTGGACGAG
CGGCTGCGCGTGAACTGTGTGCTTCCGGTGCGAATTGCGCACGGCGTGGA
GGCGGTGGCGCCCATTGTGGCGGCAGCGCCGTCGCACATGGGCGAGTACG
CGCCGAGCGTGTGCACCAACAGCACTGCGCATGGAGCGGCGACGGCCGAC
ACAGCGGTGGACTCTACGACGTCGTTCCGATCACCAAAGTCGGTGATGAC
GATCACGTCGCTGCTGAACCCGAGCGAGTAGACGCTGTTGGCGGCCTGTA
GACAGTTTGCGCGCACTAACTTGGTATGTAGTAGCAGTTTTGCCGGTTTG
TAAAAACTAATTCACATGTATATCTGATGTATCTGATGTATCTGTATTTG
ATGAATATACGGCGGCGACAGCGAAGGGTAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:955744..956424+

>Ggra3555.t1 ID=Ggra3555.t1|Name=Ggra3555.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=516bp|location=Sequence derived from alignment at tig00000059_pilon:955744..956424+ (Gracilaria gracilis GNS1m male)
ATGGACGCGTACAGCACGACGCACATGGGCGAACGGTACATCCCGATCTT
GCCGCGAACGTCGTCGCACGCGCACTACAACAAACGGTGCGAGACGTGCT
CTGCCTCGCACGACGGCTCGTTTGGAGCGGGGCGCTTCTGCTCGTCGCGA
TGCGCGCGAACGGTGGGCGGACTGGCGCACCGCAAGAAGCGGCTGATGGA
ACGCGAGTGCAAGCAGCGCCACGCCGTGCAGAAGAGATTGAGCAACAAGA
GGCTGCGCGCGGCCGTGGTGTCGTACAAGAACGACTGCACGCTGGACGAG
CGGCTGCGCGTGAACTGTGTGCTTCCGGTGCGAATTGCGCACGGCGTGGA
GGCGGTGGCGCCCATTGTGGCGGCAGCGCCGTCGCACATGGGCGAGTACG
CGCCGAGCGTGTGCACCAACAGCACTGCGCATGGAGCGGCGACGGCCGAC
ACAGCGGTGGACTCTACGACGTCGTTCCGATCACCAAATTTGCGCGCACT
AACTTGCGAAGGGTAA
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