Ggra3553.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3553.t1
Unique NameGgra3553.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:934282..934908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3553Ggra3553Gracilaria gracilis GNS1m malegenetig00000059_pilon 934282..934908 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3553.t1.start1Ggra3553.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 934282..934284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3553.t1.CDS1Ggra3553.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 934282..934908 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3553.t1.exon1Ggra3553.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 934282..934908 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3553.t1.stop1Ggra3553.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 934906..934908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3553.t1Ggra3553.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 934282..934908 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3553.t1 ID=Ggra3553.t1|Name=Ggra3553.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=209bp
MRASTVSATRNALRNFSTAASYADTTAHIIYRNPRRLRAAGMTALAIGQA
GFWGTATTLAQQAPEPLISSSWGVAGFGLSAAFAAMVNAYLRRNVAEVAL
LNGACIRVTAHSFGGMLSDPIVVKPNQLIAGPHRDNEKERYWTFGVSSPK
SRRPFYYFVDTKSGVMDAAAMAALVNGGEHLLAFSHKRDAHIMKTRWHQW
EQTSGRNA*
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spliced messenger RNA

>Ggra3553.t1 ID=Ggra3553.t1|Name=Ggra3553.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000059_pilon:934282..934908+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGCTTCCACCGTATCCGCAACCCGAAATGCGTTGCGTAATTTCTC
CACAGCCGCTTCATACGCCGACACCACCGCTCACATCATCTATCGCAATC
CGCGTCGTCTCCGCGCCGCAGGCATGACAGCTTTAGCAATTGGACAGGCT
GGGTTCTGGGGCACCGCCACCACACTCGCGCAGCAGGCGCCTGAGCCTCT
GATTTCATCTAGTTGGGGTGTAGCGGGCTTCGGTCTCAGTGCTGCATTTG
CTGCCATGGTCAATGCTTACTTGCGCCGGAATGTGGCGGAAGTGGCCTTG
CTCAACGGTGCTTGCATTCGAGTGACTGCGCACTCTTTTGGCGGCATGCT
TTCTGATCCTATTGTTGTCAAACCGAATCAACTTATCGCGGGGCCGCATC
GAGATAATGAGAAGGAACGCTATTGGACGTTTGGAGTTTCTTCGCCCAAG
TCTAGGAGGCCCTTTTATTACTTTGTAGATACCAAGAGCGGTGTCATGGA
TGCTGCCGCAATGGCAGCTCTGGTCAACGGTGGGGAGCATCTGTTAGCAT
TTTCGCACAAACGCGACGCACACATCATGAAGACGAGATGGCATCAATGG
GAACAAACGTCCGGAAGAAATGCATAA
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protein sequence of Ggra3553.t1

>Ggra3553.t1 ID=Ggra3553.t1|Name=Ggra3553.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MRASTVSATRNALRNFSTAASYADTTAHIIYRNPRRLRAAGMTALAIGQA
GFWGTATTLAQQAPEPLISSSWGVAGFGLSAAFAAMVNAYLRRNVAEVAL
LNGACIRVTAHSFGGMLSDPIVVKPNQLIAGPHRDNEKERYWTFGVSSPK
SRRPFYYFVDTKSGVMDAAAMAALVNGGEHLLAFSHKRDAHIMKTRWHQW
EQTSGRNA*
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mRNA from alignment at tig00000059_pilon:934282..934908+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3553.t1 ID=Ggra3553.t1|Name=Ggra3553.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000059_pilon:934282..934908+ (Gracilaria gracilis GNS1m male)
ATGCGAGCTTCCACCGTATCCGCAACCCGAAATGCGTTGCGTAATTTCTC
CACAGCCGCTTCATACGCCGACACCACCGCTCACATCATCTATCGCAATC
CGCGTCGTCTCCGCGCCGCAGGCATGACAGCTTTAGCAATTGGACAGGCT
GGGTTCTGGGGCACCGCCACCACACTCGCGCAGCAGGCGCCTGAGCCTCT
GATTTCATCTAGTTGGGGTGTAGCGGGCTTCGGTCTCAGTGCTGCATTTG
CTGCCATGGTCAATGCTTACTTGCGCCGGAATGTGGCGGAAGTGGCCTTG
CTCAACGGTGCTTGCATTCGAGTGACTGCGCACTCTTTTGGCGGCATGCT
TTCTGATCCTATTGTTGTCAAACCGAATCAACTTATCGCGGGGCCGCATC
GAGATAATGAGAAGGAACGCTATTGGACGTTTGGAGTTTCTTCGCCCAAG
TCTAGGAGGCCCTTTTATTACTTTGTAGATACCAAGAGCGGTGTCATGGA
TGCTGCCGCAATGGCAGCTCTGGTCAACGGTGGGGAGCATCTGTTAGCAT
TTTCGCACAAACGCGACGCACACATCATGAAGACGAGATGGCATCAATGG
GAACAAACGTCCGGAAGAAATGCATAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:934282..934908+

>Ggra3553.t1 ID=Ggra3553.t1|Name=Ggra3553.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00000059_pilon:934282..934908+ (Gracilaria gracilis GNS1m male)
ATGCGAGCTTCCACCGTATCCGCAACCCGAAATGCGTTGCGTAATTTCTC
CACAGCCGCTTCATACGCCGACACCACCGCTCACATCATCTATCGCAATC
CGCGTCGTCTCCGCGCCGCAGGCATGACAGCTTTAGCAATTGGACAGGCT
GGGTTCTGGGGCACCGCCACCACACTCGCGCAGCAGGCGCCTGAGCCTCT
GATTTCATCTAGTTGGGGTGTAGCGGGCTTCGGTCTCAGTGCTGCATTTG
CTGCCATGGTCAATGCTTACTTGCGCCGGAATGTGGCGGAAGTGGCCTTG
CTCAACGGTGCTTGCATTCGAGTGACTGCGCACTCTTTTGGCGGCATGCT
TTCTGATCCTATTGTTGTCAAACCGAATCAACTTATCGCGGGGCCGCATC
GAGATAATGAGAAGGAACGCTATTGGACGTTTGGAGTTTCTTCGCCCAAG
TCTAGGAGGCCCTTTTATTACTTTGTAGATACCAAGAGCGGTGTCATGGA
TGCTGCCGCAATGGCAGCTCTGGTCAACGGTGGGGAGCATCTGTTAGCAT
TTTCGCACAAACGCGACGCACACATCATGAAGACGAGATGGCATCAATGG
GAACAAACGTCCGGAAGAAATGCATAA
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