Ggra3550.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3550.t1
Unique NameGgra3550.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length433
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:912929..914227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue1.68e-130
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3550Ggra3550Gracilaria gracilis GNS1m malegenetig00000059_pilon 912929..914227 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3550.t1.stop1Ggra3550.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 912929..912931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3550.t1.CDS1Ggra3550.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 912929..914227 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3550.t1.exon1Ggra3550.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 912929..914227 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3550.t1.start1Ggra3550.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 914225..914227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3550.t1Ggra3550.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 912929..914227 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3550.t1 ID=Ggra3550.t1|Name=Ggra3550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=433bp
MESPASVSQVAVRRAAPVNMCGWLFKEGKRFRSRYKRFLVLQQGVLSNHH
NEISPPTWVVRLADCPFVAGPRPRELILHFPQRRISFFAETDDIFEKWMH
AVKCSTNCTVNDFYSVGELLGEGAFAQVKLATNKQTSEKVAVKVIKKKGY
DPKEMQFIMREVDIMKSVSHPNVVNTIDIFDSPSQLHIVLEYMQGGELFD
IIAEAGSFSEQQAAQVTRDVIKGIKYLHMHDIVHRDIKPENVLCKTRTWP
LAVKIADFGLANFSKDGEINEQEHNMIGTPGYVAPEVVKREKYGTGVDMW
AIGVLLYIMLSGKMPFYGRDDHACLKMTASGKYSMPPKEWSKISDDAISL
VKGLLQLNPDKRLTANAALEHKWLADPSAASASPINNDLSGIHSSRRKFR
KAVVAAMTVRRINQLAGLTAAAASASNQPTSA*
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spliced messenger RNA

>Ggra3550.t1 ID=Ggra3550.t1|Name=Ggra3550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000059_pilon:912929..914227- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGTCCTGCTTCCGTTTCCCAGGTCGCTGTGCGGCGTGCCGCCCC
CGTCAACATGTGTGGCTGGCTCTTCAAGGAGGGCAAGCGTTTTCGCTCGC
GGTACAAGCGCTTCCTTGTCTTGCAGCAGGGCGTGCTTTCCAACCACCAC
AATGAGATTTCCCCGCCCACCTGGGTCGTGCGTCTTGCCGACTGCCCCTT
TGTCGCCGGCCCGCGCCCGAGGGAGCTCATCCTGCACTTCCCGCAGCGTC
GCATCTCCTTCTTCGCCGAAACCGATGATATCTTCGAAAAGTGGATGCAC
GCCGTCAAGTGTTCCACCAACTGCACCGTCAACGACTTCTACAGCGTGGG
CGAACTGTTGGGCGAGGGAGCCTTTGCCCAGGTCAAGCTTGCCACCAACA
AGCAAACTAGCGAAAAGGTCGCTGTTAAGGTCATTAAGAAGAAGGGCTAC
GACCCCAAGGAAATGCAATTCATCATGCGCGAGGTCGATATCATGAAGAG
CGTCTCTCACCCCAACGTCGTCAACACCATCGACATCTTCGACTCCCCCT
CGCAGTTGCACATTGTGCTCGAGTACATGCAGGGAGGTGAACTCTTCGAT
ATCATCGCCGAAGCTGGCTCCTTCTCAGAACAGCAGGCCGCCCAGGTCAC
GCGTGATGTTATCAAGGGCATCAAATATCTACACATGCACGACATTGTTC
ATCGTGATATCAAGCCTGAGAACGTCTTATGCAAGACTAGGACTTGGCCC
CTCGCAGTCAAGATAGCCGATTTTGGCCTGGCCAATTTCTCCAAGGACGG
CGAAATAAACGAACAGGAGCACAACATGATTGGTACCCCGGGATATGTTG
CACCCGAAGTCGTCAAGCGTGAGAAATATGGCACTGGTGTTGATATGTGG
GCCATTGGCGTGTTGCTCTACATTATGCTTAGCGGCAAAATGCCCTTCTA
CGGAAGAGATGATCACGCCTGCCTCAAAATGACAGCAAGTGGAAAGTATA
GCATGCCGCCTAAGGAATGGTCCAAGATTAGTGATGATGCCATTTCTCTT
GTCAAGGGTTTGTTGCAGCTTAACCCCGATAAGCGCCTTACCGCCAATGC
TGCATTAGAACACAAGTGGTTGGCCGATCCGTCCGCAGCCAGTGCTTCGC
CTATCAACAACGATCTCAGTGGCATCCACTCTAGCCGCAGAAAGTTTAGG
AAGGCTGTGGTGGCTGCCATGACTGTTAGAAGGATTAACCAGCTTGCCGG
TCTCACTGCTGCTGCTGCCTCTGCTTCTAACCAGCCCACTTCTGCCTAG
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protein sequence of Ggra3550.t1

>Ggra3550.t1 ID=Ggra3550.t1|Name=Ggra3550.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=433bp
MESPASVSQVAVRRAAPVNMCGWLFKEGKRFRSRYKRFLVLQQGVLSNHH
NEISPPTWVVRLADCPFVAGPRPRELILHFPQRRISFFAETDDIFEKWMH
AVKCSTNCTVNDFYSVGELLGEGAFAQVKLATNKQTSEKVAVKVIKKKGY
DPKEMQFIMREVDIMKSVSHPNVVNTIDIFDSPSQLHIVLEYMQGGELFD
IIAEAGSFSEQQAAQVTRDVIKGIKYLHMHDIVHRDIKPENVLCKTRTWP
LAVKIADFGLANFSKDGEINEQEHNMIGTPGYVAPEVVKREKYGTGVDMW
AIGVLLYIMLSGKMPFYGRDDHACLKMTASGKYSMPPKEWSKISDDAISL
VKGLLQLNPDKRLTANAALEHKWLADPSAASASPINNDLSGIHSSRRKFR
KAVVAAMTVRRINQLAGLTAAAASASNQPTSA*
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mRNA from alignment at tig00000059_pilon:912929..914227-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3550.t1 ID=Ggra3550.t1|Name=Ggra3550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000059_pilon:912929..914227- (Gracilaria gracilis GNS1m male)
ATGGAGAGTCCTGCTTCCGTTTCCCAGGTCGCTGTGCGGCGTGCCGCCCC
CGTCAACATGTGTGGCTGGCTCTTCAAGGAGGGCAAGCGTTTTCGCTCGC
GGTACAAGCGCTTCCTTGTCTTGCAGCAGGGCGTGCTTTCCAACCACCAC
AATGAGATTTCCCCGCCCACCTGGGTCGTGCGTCTTGCCGACTGCCCCTT
TGTCGCCGGCCCGCGCCCGAGGGAGCTCATCCTGCACTTCCCGCAGCGTC
GCATCTCCTTCTTCGCCGAAACCGATGATATCTTCGAAAAGTGGATGCAC
GCCGTCAAGTGTTCCACCAACTGCACCGTCAACGACTTCTACAGCGTGGG
CGAACTGTTGGGCGAGGGAGCCTTTGCCCAGGTCAAGCTTGCCACCAACA
AGCAAACTAGCGAAAAGGTCGCTGTTAAGGTCATTAAGAAGAAGGGCTAC
GACCCCAAGGAAATGCAATTCATCATGCGCGAGGTCGATATCATGAAGAG
CGTCTCTCACCCCAACGTCGTCAACACCATCGACATCTTCGACTCCCCCT
CGCAGTTGCACATTGTGCTCGAGTACATGCAGGGAGGTGAACTCTTCGAT
ATCATCGCCGAAGCTGGCTCCTTCTCAGAACAGCAGGCCGCCCAGGTCAC
GCGTGATGTTATCAAGGGCATCAAATATCTACACATGCACGACATTGTTC
ATCGTGATATCAAGCCTGAGAACGTCTTATGCAAGACTAGGACTTGGCCC
CTCGCAGTCAAGATAGCCGATTTTGGCCTGGCCAATTTCTCCAAGGACGG
CGAAATAAACGAACAGGAGCACAACATGATTGGTACCCCGGGATATGTTG
CACCCGAAGTCGTCAAGCGTGAGAAATATGGCACTGGTGTTGATATGTGG
GCCATTGGCGTGTTGCTCTACATTATGCTTAGCGGCAAAATGCCCTTCTA
CGGAAGAGATGATCACGCCTGCCTCAAAATGACAGCAAGTGGAAAGTATA
GCATGCCGCCTAAGGAATGGTCCAAGATTAGTGATGATGCCATTTCTCTT
GTCAAGGGTTTGTTGCAGCTTAACCCCGATAAGCGCCTTACCGCCAATGC
TGCATTAGAACACAAGTGGTTGGCCGATCCGTCCGCAGCCAGTGCTTCGC
CTATCAACAACGATCTCAGTGGCATCCACTCTAGCCGCAGAAAGTTTAGG
AAGGCTGTGGTGGCTGCCATGACTGTTAGAAGGATTAACCAGCTTGCCGG
TCTCACTGCTGCTGCTGCCTCTGCTTCTAACCAGCCCACTTCTGCCTAG
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Coding sequence (CDS) from alignment at tig00000059_pilon:912929..914227-

>Ggra3550.t1 ID=Ggra3550.t1|Name=Ggra3550.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1299bp|location=Sequence derived from alignment at tig00000059_pilon:912929..914227- (Gracilaria gracilis GNS1m male)
ATGGAGAGTCCTGCTTCCGTTTCCCAGGTCGCTGTGCGGCGTGCCGCCCC
CGTCAACATGTGTGGCTGGCTCTTCAAGGAGGGCAAGCGTTTTCGCTCGC
GGTACAAGCGCTTCCTTGTCTTGCAGCAGGGCGTGCTTTCCAACCACCAC
AATGAGATTTCCCCGCCCACCTGGGTCGTGCGTCTTGCCGACTGCCCCTT
TGTCGCCGGCCCGCGCCCGAGGGAGCTCATCCTGCACTTCCCGCAGCGTC
GCATCTCCTTCTTCGCCGAAACCGATGATATCTTCGAAAAGTGGATGCAC
GCCGTCAAGTGTTCCACCAACTGCACCGTCAACGACTTCTACAGCGTGGG
CGAACTGTTGGGCGAGGGAGCCTTTGCCCAGGTCAAGCTTGCCACCAACA
AGCAAACTAGCGAAAAGGTCGCTGTTAAGGTCATTAAGAAGAAGGGCTAC
GACCCCAAGGAAATGCAATTCATCATGCGCGAGGTCGATATCATGAAGAG
CGTCTCTCACCCCAACGTCGTCAACACCATCGACATCTTCGACTCCCCCT
CGCAGTTGCACATTGTGCTCGAGTACATGCAGGGAGGTGAACTCTTCGAT
ATCATCGCCGAAGCTGGCTCCTTCTCAGAACAGCAGGCCGCCCAGGTCAC
GCGTGATGTTATCAAGGGCATCAAATATCTACACATGCACGACATTGTTC
ATCGTGATATCAAGCCTGAGAACGTCTTATGCAAGACTAGGACTTGGCCC
CTCGCAGTCAAGATAGCCGATTTTGGCCTGGCCAATTTCTCCAAGGACGG
CGAAATAAACGAACAGGAGCACAACATGATTGGTACCCCGGGATATGTTG
CACCCGAAGTCGTCAAGCGTGAGAAATATGGCACTGGTGTTGATATGTGG
GCCATTGGCGTGTTGCTCTACATTATGCTTAGCGGCAAAATGCCCTTCTA
CGGAAGAGATGATCACGCCTGCCTCAAAATGACAGCAAGTGGAAAGTATA
GCATGCCGCCTAAGGAATGGTCCAAGATTAGTGATGATGCCATTTCTCTT
GTCAAGGGTTTGTTGCAGCTTAACCCCGATAAGCGCCTTACCGCCAATGC
TGCATTAGAACACAAGTGGTTGGCCGATCCGTCCGCAGCCAGTGCTTCGC
CTATCAACAACGATCTCAGTGGCATCCACTCTAGCCGCAGAAAGTTTAGG
AAGGCTGTGGTGGCTGCCATGACTGTTAGAAGGATTAACCAGCTTGCCGG
TCTCACTGCTGCTGCTGCCTCTGCTTCTAACCAGCCCACTTCTGCCTAG
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