Ggra3546.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3546.t1
Unique NameGgra3546.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:899943..900923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr45605
PFAMs2OG-FeII_Oxy,DIOX_N
Max annot lvl2836|Bacillariophyta
Evalue1.33e-54
EggNOG OGsCOG3491@1|root,KOG0143@2759|Eukaryota,2XEMB@2836|Bacillariophyta
DescriptionBelongs to the iron ascorbate-dependent oxidoreductase family
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3546Ggra3546Gracilaria gracilis GNS1m malegenetig00000059_pilon 899943..900923 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3546.t1.stop1Ggra3546.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 899943..899945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3546.t1.CDS1Ggra3546.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 899943..900923 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3546.t1.exon1Ggra3546.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 899943..900923 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3546.t1.start1Ggra3546.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 900921..900923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3546.t1Ggra3546.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 899943..900923 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3546.t1 ID=Ggra3546.t1|Name=Ggra3546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp
MSAQVARVDFSPFATLPLHEPLQHVTEAQAAAAAHVDAALRTHGVLHLCN
VRVPEPQLQRMWQLSRQLFSLPLSHKLSRLQRLCKRTNYGYIAPGAETLN
RQRAADLKEAYNFKNPAEYPLCFDGFPPHFERHCHQFYSCMAQIGRRFSV
ACALALGLPPNHLCDMLQRLDAATLRMIHYPPTPFERGVSTGERHQHAPI
RVGEHTDYGLFTLLFCDARGLQVRAPHADQWLYVPPPPPGAVVVTVGALL
ARVSNDAWRATPHRVVVSDADVAARSRYSVAMFLDPDKRCVIEPHPSLIA
PGEGAKYAPISSEAYGRARVHGAIND*
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spliced messenger RNA

>Ggra3546.t1 ID=Ggra3546.t1|Name=Ggra3546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000059_pilon:899943..900923- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCGCAGGTGGCGCGCGTGGATTTCTCGCCGTTCGCTACGCTGCC
GCTGCACGAGCCGCTGCAGCACGTGACGGAGGCGCAGGCGGCGGCGGCGG
CGCACGTCGACGCGGCGCTGCGCACGCACGGCGTGCTACACCTGTGCAAT
GTGCGCGTGCCCGAGCCGCAGCTGCAGCGCATGTGGCAGCTGTCGCGCCA
GCTGTTCTCGCTGCCGCTGTCGCACAAGCTGTCGCGTCTGCAGCGCCTCT
GCAAGCGCACCAACTACGGCTACATTGCGCCCGGCGCCGAGACGCTCAAC
CGCCAGCGAGCCGCCGACCTCAAGGAGGCGTACAACTTCAAAAACCCCGC
CGAGTACCCGCTATGCTTTGACGGTTTCCCGCCGCACTTTGAGCGCCACT
GTCACCAATTCTACAGCTGCATGGCCCAGATCGGCCGCCGCTTCAGCGTG
GCGTGCGCGCTGGCGCTCGGTCTGCCACCAAACCACCTGTGCGACATGCT
GCAGCGCCTGGATGCAGCCACGCTGCGTATGATACACTACCCGCCCACGC
CGTTCGAGCGCGGCGTCAGCACGGGCGAGCGCCACCAGCACGCGCCCATT
CGCGTCGGCGAGCACACCGACTACGGGCTGTTCACGCTGCTGTTCTGCGA
CGCGCGCGGCTTACAGGTGCGCGCGCCGCACGCCGACCAGTGGCTGTACG
TGCCGCCGCCGCCGCCAGGCGCCGTCGTCGTCACGGTGGGCGCGTTGCTG
GCGCGCGTTAGCAACGACGCGTGGCGCGCCACGCCGCACCGCGTCGTGGT
GAGCGACGCCGATGTCGCCGCGCGCAGCCGCTACTCCGTCGCCATGTTCC
TCGACCCGGACAAGCGCTGCGTCATTGAGCCGCACCCGAGCTTGATTGCG
CCGGGAGAGGGCGCCAAATACGCGCCCATCAGCAGCGAGGCGTATGGGCG
CGCGCGCGTGCACGGCGCCATTAATGACTGA
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protein sequence of Ggra3546.t1

>Ggra3546.t1 ID=Ggra3546.t1|Name=Ggra3546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=327bp
MSAQVARVDFSPFATLPLHEPLQHVTEAQAAAAAHVDAALRTHGVLHLCN
VRVPEPQLQRMWQLSRQLFSLPLSHKLSRLQRLCKRTNYGYIAPGAETLN
RQRAADLKEAYNFKNPAEYPLCFDGFPPHFERHCHQFYSCMAQIGRRFSV
ACALALGLPPNHLCDMLQRLDAATLRMIHYPPTPFERGVSTGERHQHAPI
RVGEHTDYGLFTLLFCDARGLQVRAPHADQWLYVPPPPPGAVVVTVGALL
ARVSNDAWRATPHRVVVSDADVAARSRYSVAMFLDPDKRCVIEPHPSLIA
PGEGAKYAPISSEAYGRARVHGAIND*
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mRNA from alignment at tig00000059_pilon:899943..900923-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3546.t1 ID=Ggra3546.t1|Name=Ggra3546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000059_pilon:899943..900923- (Gracilaria gracilis GNS1m male)
ATGTCAGCGCAGGTGGCGCGCGTGGATTTCTCGCCGTTCGCTACGCTGCC
GCTGCACGAGCCGCTGCAGCACGTGACGGAGGCGCAGGCGGCGGCGGCGG
CGCACGTCGACGCGGCGCTGCGCACGCACGGCGTGCTACACCTGTGCAAT
GTGCGCGTGCCCGAGCCGCAGCTGCAGCGCATGTGGCAGCTGTCGCGCCA
GCTGTTCTCGCTGCCGCTGTCGCACAAGCTGTCGCGTCTGCAGCGCCTCT
GCAAGCGCACCAACTACGGCTACATTGCGCCCGGCGCCGAGACGCTCAAC
CGCCAGCGAGCCGCCGACCTCAAGGAGGCGTACAACTTCAAAAACCCCGC
CGAGTACCCGCTATGCTTTGACGGTTTCCCGCCGCACTTTGAGCGCCACT
GTCACCAATTCTACAGCTGCATGGCCCAGATCGGCCGCCGCTTCAGCGTG
GCGTGCGCGCTGGCGCTCGGTCTGCCACCAAACCACCTGTGCGACATGCT
GCAGCGCCTGGATGCAGCCACGCTGCGTATGATACACTACCCGCCCACGC
CGTTCGAGCGCGGCGTCAGCACGGGCGAGCGCCACCAGCACGCGCCCATT
CGCGTCGGCGAGCACACCGACTACGGGCTGTTCACGCTGCTGTTCTGCGA
CGCGCGCGGCTTACAGGTGCGCGCGCCGCACGCCGACCAGTGGCTGTACG
TGCCGCCGCCGCCGCCAGGCGCCGTCGTCGTCACGGTGGGCGCGTTGCTG
GCGCGCGTTAGCAACGACGCGTGGCGCGCCACGCCGCACCGCGTCGTGGT
GAGCGACGCCGATGTCGCCGCGCGCAGCCGCTACTCCGTCGCCATGTTCC
TCGACCCGGACAAGCGCTGCGTCATTGAGCCGCACCCGAGCTTGATTGCG
CCGGGAGAGGGCGCCAAATACGCGCCCATCAGCAGCGAGGCGTATGGGCG
CGCGCGCGTGCACGGCGCCATTAATGACTGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:899943..900923-

>Ggra3546.t1 ID=Ggra3546.t1|Name=Ggra3546.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000059_pilon:899943..900923- (Gracilaria gracilis GNS1m male)
ATGTCAGCGCAGGTGGCGCGCGTGGATTTCTCGCCGTTCGCTACGCTGCC
GCTGCACGAGCCGCTGCAGCACGTGACGGAGGCGCAGGCGGCGGCGGCGG
CGCACGTCGACGCGGCGCTGCGCACGCACGGCGTGCTACACCTGTGCAAT
GTGCGCGTGCCCGAGCCGCAGCTGCAGCGCATGTGGCAGCTGTCGCGCCA
GCTGTTCTCGCTGCCGCTGTCGCACAAGCTGTCGCGTCTGCAGCGCCTCT
GCAAGCGCACCAACTACGGCTACATTGCGCCCGGCGCCGAGACGCTCAAC
CGCCAGCGAGCCGCCGACCTCAAGGAGGCGTACAACTTCAAAAACCCCGC
CGAGTACCCGCTATGCTTTGACGGTTTCCCGCCGCACTTTGAGCGCCACT
GTCACCAATTCTACAGCTGCATGGCCCAGATCGGCCGCCGCTTCAGCGTG
GCGTGCGCGCTGGCGCTCGGTCTGCCACCAAACCACCTGTGCGACATGCT
GCAGCGCCTGGATGCAGCCACGCTGCGTATGATACACTACCCGCCCACGC
CGTTCGAGCGCGGCGTCAGCACGGGCGAGCGCCACCAGCACGCGCCCATT
CGCGTCGGCGAGCACACCGACTACGGGCTGTTCACGCTGCTGTTCTGCGA
CGCGCGCGGCTTACAGGTGCGCGCGCCGCACGCCGACCAGTGGCTGTACG
TGCCGCCGCCGCCGCCAGGCGCCGTCGTCGTCACGGTGGGCGCGTTGCTG
GCGCGCGTTAGCAACGACGCGTGGCGCGCCACGCCGCACCGCGTCGTGGT
GAGCGACGCCGATGTCGCCGCGCGCAGCCGCTACTCCGTCGCCATGTTCC
TCGACCCGGACAAGCGCTGCGTCATTGAGCCGCACCCGAGCTTGATTGCG
CCGGGAGAGGGCGCCAAATACGCGCCCATCAGCAGCGAGGCGTATGGGCG
CGCGCGCGTGCACGGCGCCATTAATGACTGA
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