Ggra3538.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3538.t1
Unique NameGgra3538.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:888569..889214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_009862369.1
Preferred nameDNLZ
PFAMszf-DNL
Max annot lvl33208|Metazoa
KEGG koko:K17808
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0030150,GO:0031647,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0050821,GO:0051087,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:1990542
Evalue1.17e-14
EggNOG OGsKOG3277@1|root,KOG3277@2759|Eukaryota,3A8PK@33154|Opisthokonta,3BSQ4@33208|Metazoa,3D9DP@33213|Bilateria,48E7J@7711|Chordata
Descriptionprotein import into mitochondrial matrix
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3538Ggra3538Gracilaria gracilis GNS1m malegenetig00000059_pilon 888569..889214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3538.t1Ggra3538.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 888569..889214 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3538.t1.start1Ggra3538.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 888569..888571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3538.t1.CDS1Ggra3538.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 888569..889019 +
Ggra3538.t1.CDS2Ggra3538.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 889108..889214 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3538.t1.exon1Ggra3538.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 888569..889019 +
Ggra3538.t1.exon2Ggra3538.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 889108..889214 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3538.t1.intron1Ggra3538.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 889020..889107 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3538.t1.stop1Ggra3538.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 889212..889214 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3538.t1 ID=Ggra3538.t1|Name=Ggra3538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=186bp
MQCLFIPQPFPAFSRRLDGRKRTRRRPLIPVCAKKEGEQQNRLPSGKGFS
RASSEGKVGFVGSDTIGISFTCNADSCNQRVTKAIKRRSYERGTVVIQCP
SCKKHHIIADNIGMYAHLTGGRKNIEEIARDTGANVTRVNSSTFDLEKLV
SNVIDDNSANEEGSLPGNENLESKGEDPGRTGSSD*
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spliced messenger RNA

>Ggra3538.t1 ID=Ggra3538.t1|Name=Ggra3538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000059_pilon:888569..889214+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTGTTTATTTATACCACAGCCGTTTCCGGCCTTCAGTCGTCGACT
GGATGGAAGAAAGAGGACTAGGCGCAGACCACTGATTCCAGTATGTGCAA
AGAAGGAAGGGGAGCAGCAGAATCGCCTACCCTCTGGCAAAGGTTTCTCA
AGAGCCTCCAGTGAAGGAAAGGTCGGATTTGTCGGCTCAGACACAATTGG
CATATCTTTCACGTGCAATGCCGACTCATGCAATCAACGGGTGACAAAAG
CAATCAAGAGAAGGAGCTATGAGAGGGGCACCGTGGTCATCCAATGCCCA
TCCTGTAAAAAGCATCATATCATAGCCGATAATATAGGAATGTATGCTCA
CTTGACCGGTGGCAGAAAAAACATTGAGGAAATAGCAAGAGACACAGGCG
CGAATGTTACTCGAGTCAATTCTTCCACGTTCGATTTAGAAAAACTTGTC
TCAAATGTGATCGATGACAACAGTGCGAATGAAGAGGGTTCTCTTCCAGG
AAATGAAAACCTGGAGTCAAAAGGTGAGGACCCGGGACGAACTGGAAGTA
GTGATTGA
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protein sequence of Ggra3538.t1

>Ggra3538.t1 ID=Ggra3538.t1|Name=Ggra3538.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MQCLFIPQPFPAFSRRLDGRKRTRRRPLIPVCAKKEGEQQNRLPSGKGFS
RASSEGKVGFVGSDTIGISFTCNADSCNQRVTKAIKRRSYERGTVVIQCP
SCKKHHIIADNIGMYAHLTGGRKNIEEIARDTGANVTRVNSSTFDLEKLV
SNVIDDNSANEEGSLPGNENLESKGEDPGRTGSSD*
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mRNA from alignment at tig00000059_pilon:888569..889214+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3538.t1 ID=Ggra3538.t1|Name=Ggra3538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=646bp|location=Sequence derived from alignment at tig00000059_pilon:888569..889214+ (Gracilaria gracilis GNS1m male)
ATGCAGTGTTTATTTATACCACAGCCGTTTCCGGCCTTCAGTCGTCGACT
GGATGGAAGAAAGAGGACTAGGCGCAGACCACTGATTCCAGTATGTGCAA
AGAAGGAAGGGGAGCAGCAGAATCGCCTACCCTCTGGCAAAGGTTTCTCA
AGAGCCTCCAGTGAAGGAAAGGTCGGATTTGTCGGCTCAGACACAATTGG
CATATCTTTCACGTGCAATGCCGACTCATGCAATCAACGGGTGACAAAAG
CAATCAAGAGAAGGAGCTATGAGAGGGGCACCGTGGTCATCCAATGCCCA
TCCTGTAAAAAGCATCATATCATAGCCGATAATATAGGAATGTATGCTCA
CTTGACCGGTGGCAGAAAAAACATTGAGGAAATAGCAAGAGACACAGGCG
CGAATGTTACTCGAGTCAATTCTTCCACGTTCGATTTAGAAAAACTTGTC
TGTAAGTTGCTTTGAAAGGTTGGCTTCATAATGGTCACAAACCAACTGAG
CTTCTGACAAAAACGTATCCTTTTATATGTACCTTGCAGCAAATGTGATC
GATGACAACAGTGCGAATGAAGAGGGTTCTCTTCCAGGAAATGAAAACCT
GGAGTCAAAAGGTGAGGACCCGGGACGAACTGGAAGTAGTGATTGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:888569..889214+

>Ggra3538.t1 ID=Ggra3538.t1|Name=Ggra3538.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00000059_pilon:888569..889214+ (Gracilaria gracilis GNS1m male)
ATGCAGTGTTTATTTATACCACAGCCGTTTCCGGCCTTCAGTCGTCGACT
GGATGGAAGAAAGAGGACTAGGCGCAGACCACTGATTCCAGTATGTGCAA
AGAAGGAAGGGGAGCAGCAGAATCGCCTACCCTCTGGCAAAGGTTTCTCA
AGAGCCTCCAGTGAAGGAAAGGTCGGATTTGTCGGCTCAGACACAATTGG
CATATCTTTCACGTGCAATGCCGACTCATGCAATCAACGGGTGACAAAAG
CAATCAAGAGAAGGAGCTATGAGAGGGGCACCGTGGTCATCCAATGCCCA
TCCTGTAAAAAGCATCATATCATAGCCGATAATATAGGAATGTATGCTCA
CTTGACCGGTGGCAGAAAAAACATTGAGGAAATAGCAAGAGACACAGGCG
CGAATGTTACTCGAGTCAATTCTTCCACGTTCGATTTAGAAAAACTTGTC
TCAAATGTGATCGATGACAACAGTGCGAATGAAGAGGGTTCTCTTCCAGG
AAATGAAAACCTGGAGTCAAAAGGTGAGGACCCGGGACGAACTGGAAGTA
GTGATTGA
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