Ggra3533.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3533.t1
Unique Name	Ggra3533.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	835

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:862792..865296 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008616131.1
PFAMs	Lipase_3
Max annot lvl	2759\|Eukaryota
Evalue	2.39e-38
EggNOG OGs	KOG4569@1\|root,KOG4569@2759\|Eukaryota
Description	phospholipase A1 activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3533	Ggra3533	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 862792..865296 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3533.t1.stop1	Ggra3533.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 862792..862794 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3533.t1.CDS1	Ggra3533.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 862792..865296 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3533.t1.exon1	Ggra3533.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 862792..865296 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3533.t1.start1	Ggra3533.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 865294..865296 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3533.t1	Ggra3533.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 862792..865296 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:862792..865296-
coding sequence from alignment at tig00000059_pilon:862792..865296-

mRNA sequence

>Ggra3533.t1 ID=Ggra3533.t1|Name=Ggra3533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=835bp
MLGQRQSTVSLSGNPTEQFEMTDSDEDRRFDDAPESFSSDDMLSLAHTDD
EIAVPLTPQFKTFKKLEVIDSKRINFMARTYNVVALVGLVFSTTVIVLAR
TVFSNAFKGIPGQFPDLSVYTFPKAFVLVDSILFYILFTYSLLLLIIFAS
VLTKQGKDRLLNEQVWVLLLLISTVVYLIPFEASIRFRRDFLNLPAPEPG
NDATIIDVFVCFRVCSFSFIYILYLWFGAHGYRYLGRTVSFTDWKFYAPK
LLLVLAYVAYKLGILFVYRITFSEMPFASLIGFLNLYGAVNQWPTLGVVT
AVVLAVLELTIAIWICFDIRRTFGVLRKAAYVDHRTKILGFRFFLHQQAV
FNVVYIATYLLILFGLPNGAQILQFFILAQEQAGRGSYFDVLYIPFGLNL
CILAFATIEAYTNLPAEINLKSSLLRCQYKYVNHEKEHCEPVVYRNREPH
SFSNAGLELRPNCFIMQTTVELFNLSWFVYYHGTEKENKLQLEKNSLPVK
IRDFLYDKTTDTKAIVAESPDRITVAFKGTSSTQNLRTDIKVLHRSLAQV
LDLDDDFQVQPQSPSSTRRKLLRRAKVHAGFADAYHSIKGNLCQILSSIF
MEKERLVFFTGHSLGGALATLCSIDALINLGIPGQRIAVSTFGSPRVGNE
AFQELYDAEILMHWRIVAGGDMISRLPKLGYRHVGKKVILTSSGELFIDP
SALEMIFWHSQTASIVHHRKACYLLAIDAWCKSLGTDYKPDFWPFPVSAN
DSRKFATTFQKPNSMRKNYASVSKTYFGRRPADRAKRLQIFADAIDGLRS
DHQELTKPNEDIVFRWEKLVTFALSQQSSGGLPV*

spliced messenger RNA

>Ggra3533.t1 ID=Ggra3533.t1|Name=Ggra3533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2505bp|location=Sequence derived from alignment at tig00000059_pilon:862792..865296- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGACAGCGACAAAGCACAGTCTCACTCTCTGGTAATCCCACCGA
ACAATTTGAAATGACTGATTCTGATGAAGATCGCCGATTTGATGATGCAC
CTGAAAGCTTCTCGTCAGATGATATGCTTTCATTAGCCCACACTGACGAC
GAAATTGCTGTGCCCTTGACACCGCAGTTCAAAACGTTTAAGAAGCTTGA
GGTTATCGATTCAAAGCGCATCAACTTTATGGCGAGAACCTATAACGTTG
TTGCTCTTGTAGGGCTTGTATTTTCCACAACAGTCATAGTCTTGGCTAGA
ACAGTGTTTTCAAATGCGTTCAAAGGCATCCCTGGACAGTTTCCGGATCT
TTCTGTTTATACATTCCCGAAGGCATTCGTATTGGTGGACAGCATTTTGT
TCTACATCCTATTCACGTACTCTCTGTTACTGCTCATCATCTTTGCAAGC
GTTCTAACAAAGCAGGGGAAGGATCGCCTTCTCAATGAACAGGTATGGGT
CCTCTTGCTTCTTATATCAACAGTTGTGTACCTTATTCCATTTGAAGCAA
GTATCCGTTTCAGACGAGACTTTCTCAATCTCCCAGCACCGGAACCAGGA
AATGATGCTACCATCATCGATGTGTTTGTGTGTTTTCGTGTTTGCTCCTT
TTCATTTATCTACATCCTCTACTTGTGGTTTGGTGCACATGGTTACCGAT
ATTTAGGAAGGACAGTTTCTTTCACAGACTGGAAATTCTACGCCCCGAAG
CTCCTTTTGGTTCTAGCTTATGTTGCGTATAAGCTCGGGATCCTCTTCGT
TTATCGCATAACTTTTTCGGAAATGCCCTTTGCTTCACTGATCGGCTTTC
TCAACTTATACGGTGCTGTTAACCAATGGCCTACATTAGGAGTGGTAACA
GCGGTTGTTCTGGCTGTATTGGAGTTGACTATTGCAATCTGGATCTGTTT
CGATATACGACGGACTTTTGGAGTTCTACGAAAAGCCGCTTACGTTGATC
ATCGAACGAAAATCTTGGGGTTTCGATTCTTTCTGCATCAGCAAGCCGTG
TTCAACGTTGTATACATAGCCACATACTTGTTAATTCTCTTTGGTCTTCC
AAATGGGGCTCAAATCCTACAATTCTTCATCCTTGCGCAAGAACAGGCGG
GGCGTGGATCTTATTTCGACGTTCTCTATATCCCTTTTGGCCTCAACCTA
TGCATTCTCGCCTTCGCTACAATCGAAGCGTATACGAACCTCCCCGCGGA
AATCAATCTGAAAAGTAGTCTTCTTCGATGTCAATACAAATACGTGAATC
ATGAAAAGGAGCATTGTGAACCTGTCGTATATCGTAACAGAGAACCCCAC
TCGTTCTCAAACGCTGGCTTGGAACTGCGCCCCAACTGCTTCATCATGCA
AACCACTGTTGAACTTTTTAACTTGTCTTGGTTTGTATACTACCATGGAA
CAGAGAAAGAAAACAAACTGCAGTTGGAGAAGAACAGTCTACCCGTGAAG
ATAAGAGATTTTTTGTATGATAAGACCACGGACACGAAAGCCATTGTTGC
TGAATCTCCAGATAGGATTACTGTTGCGTTCAAAGGAACCTCAAGCACGC
AAAATCTGCGTACCGATATCAAAGTTCTGCACAGATCACTCGCACAGGTA
TTAGACCTCGATGATGATTTCCAGGTCCAACCACAATCACCATCATCAAC
GCGGAGGAAACTCTTACGACGAGCCAAGGTTCACGCTGGCTTTGCAGATG
CATATCACTCGATCAAAGGAAACCTCTGCCAAATATTGTCATCCATCTTC
ATGGAAAAAGAGCGTCTCGTGTTTTTCACGGGACATAGCCTCGGCGGTGC
TTTAGCAACTCTATGCAGCATAGATGCCTTGATCAACCTAGGTATTCCAG
GTCAAAGAATCGCGGTATCTACTTTTGGATCACCTCGGGTTGGTAACGAA
GCATTTCAGGAACTCTATGACGCTGAAATCCTGATGCATTGGCGTATTGT
TGCGGGAGGTGATATGATTTCTCGTCTACCGAAACTTGGATACAGACATG
TTGGAAAAAAGGTTATCCTTACTTCAAGCGGGGAGCTTTTCATTGATCCT
AGTGCCTTAGAGATGATCTTCTGGCATTCTCAGACCGCTTCAATCGTGCA
CCACAGAAAGGCATGCTATCTGCTTGCCATAGATGCCTGGTGCAAGAGTC
TGGGAACTGACTACAAGCCAGACTTCTGGCCTTTTCCAGTGTCCGCGAAC
GATAGCCGGAAATTTGCCACGACGTTTCAGAAGCCTAATAGCATGCGCAA
GAATTATGCTTCAGTGTCGAAAACGTACTTCGGCCGACGACCTGCAGATC
GAGCCAAGCGTTTGCAAATATTCGCGGATGCAATAGATGGGTTACGAAGC
GACCATCAGGAACTCACAAAACCAAATGAAGATATCGTGTTCAGATGGGA
AAAATTGGTCACGTTTGCCCTGAGTCAGCAAAGTTCAGGCGGCCTTCCGG
TGTAG

protein sequence of Ggra3533.t1

>Ggra3533.t1 ID=Ggra3533.t1|Name=Ggra3533.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=835bp
MLGQRQSTVSLSGNPTEQFEMTDSDEDRRFDDAPESFSSDDMLSLAHTDD
EIAVPLTPQFKTFKKLEVIDSKRINFMARTYNVVALVGLVFSTTVIVLAR
TVFSNAFKGIPGQFPDLSVYTFPKAFVLVDSILFYILFTYSLLLLIIFAS
VLTKQGKDRLLNEQVWVLLLLISTVVYLIPFEASIRFRRDFLNLPAPEPG
NDATIIDVFVCFRVCSFSFIYILYLWFGAHGYRYLGRTVSFTDWKFYAPK
LLLVLAYVAYKLGILFVYRITFSEMPFASLIGFLNLYGAVNQWPTLGVVT
AVVLAVLELTIAIWICFDIRRTFGVLRKAAYVDHRTKILGFRFFLHQQAV
FNVVYIATYLLILFGLPNGAQILQFFILAQEQAGRGSYFDVLYIPFGLNL
CILAFATIEAYTNLPAEINLKSSLLRCQYKYVNHEKEHCEPVVYRNREPH
SFSNAGLELRPNCFIMQTTVELFNLSWFVYYHGTEKENKLQLEKNSLPVK
IRDFLYDKTTDTKAIVAESPDRITVAFKGTSSTQNLRTDIKVLHRSLAQV
LDLDDDFQVQPQSPSSTRRKLLRRAKVHAGFADAYHSIKGNLCQILSSIF
MEKERLVFFTGHSLGGALATLCSIDALINLGIPGQRIAVSTFGSPRVGNE
AFQELYDAEILMHWRIVAGGDMISRLPKLGYRHVGKKVILTSSGELFIDP
SALEMIFWHSQTASIVHHRKACYLLAIDAWCKSLGTDYKPDFWPFPVSAN
DSRKFATTFQKPNSMRKNYASVSKTYFGRRPADRAKRLQIFADAIDGLRS
DHQELTKPNEDIVFRWEKLVTFALSQQSSGGLPV*

mRNA from alignment at tig00000059_pilon:862792..865296-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3533.t1 ID=Ggra3533.t1|Name=Ggra3533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2505bp|location=Sequence derived from alignment at tig00000059_pilon:862792..865296- (Gracilaria gracilis GNS1m male)
ATGCTCGGACAGCGACAAAGCACAGTCTCACTCTCTGGTAATCCCACCGA
ACAATTTGAAATGACTGATTCTGATGAAGATCGCCGATTTGATGATGCAC
CTGAAAGCTTCTCGTCAGATGATATGCTTTCATTAGCCCACACTGACGAC
GAAATTGCTGTGCCCTTGACACCGCAGTTCAAAACGTTTAAGAAGCTTGA
GGTTATCGATTCAAAGCGCATCAACTTTATGGCGAGAACCTATAACGTTG
TTGCTCTTGTAGGGCTTGTATTTTCCACAACAGTCATAGTCTTGGCTAGA
ACAGTGTTTTCAAATGCGTTCAAAGGCATCCCTGGACAGTTTCCGGATCT
TTCTGTTTATACATTCCCGAAGGCATTCGTATTGGTGGACAGCATTTTGT
TCTACATCCTATTCACGTACTCTCTGTTACTGCTCATCATCTTTGCAAGC
GTTCTAACAAAGCAGGGGAAGGATCGCCTTCTCAATGAACAGGTATGGGT
CCTCTTGCTTCTTATATCAACAGTTGTGTACCTTATTCCATTTGAAGCAA
GTATCCGTTTCAGACGAGACTTTCTCAATCTCCCAGCACCGGAACCAGGA
AATGATGCTACCATCATCGATGTGTTTGTGTGTTTTCGTGTTTGCTCCTT
TTCATTTATCTACATCCTCTACTTGTGGTTTGGTGCACATGGTTACCGAT
ATTTAGGAAGGACAGTTTCTTTCACAGACTGGAAATTCTACGCCCCGAAG
CTCCTTTTGGTTCTAGCTTATGTTGCGTATAAGCTCGGGATCCTCTTCGT
TTATCGCATAACTTTTTCGGAAATGCCCTTTGCTTCACTGATCGGCTTTC
TCAACTTATACGGTGCTGTTAACCAATGGCCTACATTAGGAGTGGTAACA
GCGGTTGTTCTGGCTGTATTGGAGTTGACTATTGCAATCTGGATCTGTTT
CGATATACGACGGACTTTTGGAGTTCTACGAAAAGCCGCTTACGTTGATC
ATCGAACGAAAATCTTGGGGTTTCGATTCTTTCTGCATCAGCAAGCCGTG
TTCAACGTTGTATACATAGCCACATACTTGTTAATTCTCTTTGGTCTTCC
AAATGGGGCTCAAATCCTACAATTCTTCATCCTTGCGCAAGAACAGGCGG
GGCGTGGATCTTATTTCGACGTTCTCTATATCCCTTTTGGCCTCAACCTA
TGCATTCTCGCCTTCGCTACAATCGAAGCGTATACGAACCTCCCCGCGGA
AATCAATCTGAAAAGTAGTCTTCTTCGATGTCAATACAAATACGTGAATC
ATGAAAAGGAGCATTGTGAACCTGTCGTATATCGTAACAGAGAACCCCAC
TCGTTCTCAAACGCTGGCTTGGAACTGCGCCCCAACTGCTTCATCATGCA
AACCACTGTTGAACTTTTTAACTTGTCTTGGTTTGTATACTACCATGGAA
CAGAGAAAGAAAACAAACTGCAGTTGGAGAAGAACAGTCTACCCGTGAAG
ATAAGAGATTTTTTGTATGATAAGACCACGGACACGAAAGCCATTGTTGC
TGAATCTCCAGATAGGATTACTGTTGCGTTCAAAGGAACCTCAAGCACGC
AAAATCTGCGTACCGATATCAAAGTTCTGCACAGATCACTCGCACAGGTA
TTAGACCTCGATGATGATTTCCAGGTCCAACCACAATCACCATCATCAAC
GCGGAGGAAACTCTTACGACGAGCCAAGGTTCACGCTGGCTTTGCAGATG
CATATCACTCGATCAAAGGAAACCTCTGCCAAATATTGTCATCCATCTTC
ATGGAAAAAGAGCGTCTCGTGTTTTTCACGGGACATAGCCTCGGCGGTGC
TTTAGCAACTCTATGCAGCATAGATGCCTTGATCAACCTAGGTATTCCAG
GTCAAAGAATCGCGGTATCTACTTTTGGATCACCTCGGGTTGGTAACGAA
GCATTTCAGGAACTCTATGACGCTGAAATCCTGATGCATTGGCGTATTGT
TGCGGGAGGTGATATGATTTCTCGTCTACCGAAACTTGGATACAGACATG
TTGGAAAAAAGGTTATCCTTACTTCAAGCGGGGAGCTTTTCATTGATCCT
AGTGCCTTAGAGATGATCTTCTGGCATTCTCAGACCGCTTCAATCGTGCA
CCACAGAAAGGCATGCTATCTGCTTGCCATAGATGCCTGGTGCAAGAGTC
TGGGAACTGACTACAAGCCAGACTTCTGGCCTTTTCCAGTGTCCGCGAAC
GATAGCCGGAAATTTGCCACGACGTTTCAGAAGCCTAATAGCATGCGCAA
GAATTATGCTTCAGTGTCGAAAACGTACTTCGGCCGACGACCTGCAGATC
GAGCCAAGCGTTTGCAAATATTCGCGGATGCAATAGATGGGTTACGAAGC
GACCATCAGGAACTCACAAAACCAAATGAAGATATCGTGTTCAGATGGGA
AAAATTGGTCACGTTTGCCCTGAGTCAGCAAAGTTCAGGCGGCCTTCCGG
TGTAG

Coding sequence (CDS) from alignment at tig00000059_pilon:862792..865296-

>Ggra3533.t1 ID=Ggra3533.t1|Name=Ggra3533.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2505bp|location=Sequence derived from alignment at tig00000059_pilon:862792..865296- (Gracilaria gracilis GNS1m male)
ATGCTCGGACAGCGACAAAGCACAGTCTCACTCTCTGGTAATCCCACCGA
ACAATTTGAAATGACTGATTCTGATGAAGATCGCCGATTTGATGATGCAC
CTGAAAGCTTCTCGTCAGATGATATGCTTTCATTAGCCCACACTGACGAC
GAAATTGCTGTGCCCTTGACACCGCAGTTCAAAACGTTTAAGAAGCTTGA
GGTTATCGATTCAAAGCGCATCAACTTTATGGCGAGAACCTATAACGTTG
TTGCTCTTGTAGGGCTTGTATTTTCCACAACAGTCATAGTCTTGGCTAGA
ACAGTGTTTTCAAATGCGTTCAAAGGCATCCCTGGACAGTTTCCGGATCT
TTCTGTTTATACATTCCCGAAGGCATTCGTATTGGTGGACAGCATTTTGT
TCTACATCCTATTCACGTACTCTCTGTTACTGCTCATCATCTTTGCAAGC
GTTCTAACAAAGCAGGGGAAGGATCGCCTTCTCAATGAACAGGTATGGGT
CCTCTTGCTTCTTATATCAACAGTTGTGTACCTTATTCCATTTGAAGCAA
GTATCCGTTTCAGACGAGACTTTCTCAATCTCCCAGCACCGGAACCAGGA
AATGATGCTACCATCATCGATGTGTTTGTGTGTTTTCGTGTTTGCTCCTT
TTCATTTATCTACATCCTCTACTTGTGGTTTGGTGCACATGGTTACCGAT
ATTTAGGAAGGACAGTTTCTTTCACAGACTGGAAATTCTACGCCCCGAAG
CTCCTTTTGGTTCTAGCTTATGTTGCGTATAAGCTCGGGATCCTCTTCGT
TTATCGCATAACTTTTTCGGAAATGCCCTTTGCTTCACTGATCGGCTTTC
TCAACTTATACGGTGCTGTTAACCAATGGCCTACATTAGGAGTGGTAACA
GCGGTTGTTCTGGCTGTATTGGAGTTGACTATTGCAATCTGGATCTGTTT
CGATATACGACGGACTTTTGGAGTTCTACGAAAAGCCGCTTACGTTGATC
ATCGAACGAAAATCTTGGGGTTTCGATTCTTTCTGCATCAGCAAGCCGTG
TTCAACGTTGTATACATAGCCACATACTTGTTAATTCTCTTTGGTCTTCC
AAATGGGGCTCAAATCCTACAATTCTTCATCCTTGCGCAAGAACAGGCGG
GGCGTGGATCTTATTTCGACGTTCTCTATATCCCTTTTGGCCTCAACCTA
TGCATTCTCGCCTTCGCTACAATCGAAGCGTATACGAACCTCCCCGCGGA
AATCAATCTGAAAAGTAGTCTTCTTCGATGTCAATACAAATACGTGAATC
ATGAAAAGGAGCATTGTGAACCTGTCGTATATCGTAACAGAGAACCCCAC
TCGTTCTCAAACGCTGGCTTGGAACTGCGCCCCAACTGCTTCATCATGCA
AACCACTGTTGAACTTTTTAACTTGTCTTGGTTTGTATACTACCATGGAA
CAGAGAAAGAAAACAAACTGCAGTTGGAGAAGAACAGTCTACCCGTGAAG
ATAAGAGATTTTTTGTATGATAAGACCACGGACACGAAAGCCATTGTTGC
TGAATCTCCAGATAGGATTACTGTTGCGTTCAAAGGAACCTCAAGCACGC
AAAATCTGCGTACCGATATCAAAGTTCTGCACAGATCACTCGCACAGGTA
TTAGACCTCGATGATGATTTCCAGGTCCAACCACAATCACCATCATCAAC
GCGGAGGAAACTCTTACGACGAGCCAAGGTTCACGCTGGCTTTGCAGATG
CATATCACTCGATCAAAGGAAACCTCTGCCAAATATTGTCATCCATCTTC
ATGGAAAAAGAGCGTCTCGTGTTTTTCACGGGACATAGCCTCGGCGGTGC
TTTAGCAACTCTATGCAGCATAGATGCCTTGATCAACCTAGGTATTCCAG
GTCAAAGAATCGCGGTATCTACTTTTGGATCACCTCGGGTTGGTAACGAA
GCATTTCAGGAACTCTATGACGCTGAAATCCTGATGCATTGGCGTATTGT
TGCGGGAGGTGATATGATTTCTCGTCTACCGAAACTTGGATACAGACATG
TTGGAAAAAAGGTTATCCTTACTTCAAGCGGGGAGCTTTTCATTGATCCT
AGTGCCTTAGAGATGATCTTCTGGCATTCTCAGACCGCTTCAATCGTGCA
CCACAGAAAGGCATGCTATCTGCTTGCCATAGATGCCTGGTGCAAGAGTC
TGGGAACTGACTACAAGCCAGACTTCTGGCCTTTTCCAGTGTCCGCGAAC
GATAGCCGGAAATTTGCCACGACGTTTCAGAAGCCTAATAGCATGCGCAA
GAATTATGCTTCAGTGTCGAAAACGTACTTCGGCCGACGACCTGCAGATC
GAGCCAAGCGTTTGCAAATATTCGCGGATGCAATAGATGGGTTACGAAGC
GACCATCAGGAACTCACAAAACCAAATGAAGATATCGTGTTCAGATGGGA
AAAATTGGTCACGTTTGCCCTGAGTCAGCAAAGTTCAGGCGGCCTTCCGG
TGTAG