Ggra353.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra353.t1
Unique NameGgra353.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:116756..118392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra353Ggra353Gracilaria gracilis GNS1m malegenetig00000950_pilon 116756..118392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra353.t1Ggra353.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 116756..118392 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra353.t1.start1Ggra353.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 116756..116758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra353.t1.CDS1Ggra353.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 116756..117026 +
Ggra353.t1.CDS2Ggra353.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000950_pilon 117887..117954 +
Ggra353.t1.CDS3Ggra353.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000950_pilon 118036..118197 +
Ggra353.t1.CDS4Ggra353.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000950_pilon 118279..118392 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra353.t1.exon1Ggra353.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 116756..117026 +
Ggra353.t1.exon2Ggra353.t1.exon2Gracilaria gracilis GNS1m maleexontig00000950_pilon 117887..117954 +
Ggra353.t1.exon3Ggra353.t1.exon3Gracilaria gracilis GNS1m maleexontig00000950_pilon 118036..118197 +
Ggra353.t1.exon4Ggra353.t1.exon4Gracilaria gracilis GNS1m maleexontig00000950_pilon 118279..118392 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra353.t1.intron1Ggra353.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000950_pilon 117027..117886 +
Ggra353.t1.intron2Ggra353.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000950_pilon 117955..118035 +
Ggra353.t1.intron3Ggra353.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000950_pilon 118198..118278 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra353.t1.stop1Ggra353.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 118390..118392 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra353.t1 ID=Ggra353.t1|Name=Ggra353.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MFRKGYSSPETGIIDVILYMVLLIRKCASTSLSTKEVNDSNMKWVFTLQQ
GSVSIVGGLAGCEGISFYLPGPYIENNAMFIKEKPNIPRNTTVPQQRSLR
EARTTTPSQHLLKVGLYALVPQHRSLLDARTTTPSQHLLKVGLYALVPQH
RSLLEARTTTPSQHLLKVGLYALVPQHRSFRKARTTTPLQHLEEIEEKRI
PLHV*
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spliced messenger RNA

>Ggra353.t1 ID=Ggra353.t1|Name=Ggra353.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000950_pilon:116756..118392+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGGAAAGGATATTCTAGTCCTGAAACTGGAATCATTGATGTAAT
ACTGTACATGGTACTGCTCATCCGCAAATGTGCTTCCACTTCCCTCTCCA
CGAAAGAAGTGAATGACTCCAACATGAAATGGGTGTTTACTCTTCAACAA
GGCTCTGTTTCGATTGTTGGCGGTTTGGCTGGATGCGAAGGGATTTCATT
CTACCTACCCGGGCCATACATAGAGAATAATGCTATGTTCATCAAGGAAA
AGCCTAATATCCCGCGAAATACGACGGTACCACAGCAGCGGTCATTGCGA
GAAGCACGAACCACAACCCCATCACAGCATCTGTTGAAGGTTGGGCTATA
CGCTCTTGTGCCGCAGCACCGGTCATTGCTAGACGCACGAACCACAACCC
CATCACAGCATCTGTTGAAGGTTGGGCTATACGCTCTTGTGCCGCAGCAC
CGGTCATTGCTAGAAGCACGAACCACAACCCCATCACAGCATCTGTTGAA
GGTTGGGCTATACGCTCTCGTGCCGCAGCACCGGTCATTTCGAAAAGCTC
GGACAACAACCCCATTACAGCATTTGGAGGAGATTGAAGAGAAGCGGATT
CCGTTGCATGTCTGA
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protein sequence of Ggra353.t1

>Ggra353.t1 ID=Ggra353.t1|Name=Ggra353.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MFRKGYSSPETGIIDVILYMVLLIRKCASTSLSTKEVNDSNMKWVFTLQQ
GSVSIVGGLAGCEGISFYLPGPYIENNAMFIKEKPNIPRNTTVPQQRSLR
EARTTTPSQHLLKVGLYALVPQHRSLLDARTTTPSQHLLKVGLYALVPQH
RSLLEARTTTPSQHLLKVGLYALVPQHRSFRKARTTTPLQHLEEIEEKRI
PLHV*
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mRNA from alignment at tig00000950_pilon:116756..118392+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra353.t1 ID=Ggra353.t1|Name=Ggra353.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1637bp|location=Sequence derived from alignment at tig00000950_pilon:116756..118392+ (Gracilaria gracilis GNS1m male)
ATGTTTCGGAAAGGATATTCTAGTCCTGAAACTGGAATCATTGATGTAAT
ACTGTACATGGTACTGCTCATCCGCAAATGTGCTTCCACTTCCCTCTCCA
CGAAAGAAGTGAATGACTCCAACATGAAATGGGTGTTTACTCTTCAACAA
GGCTCTGTTTCGATTGTTGGCGGTTTGGCTGGATGCGAAGGGATTTCATT
CTACCTACCCGGGCCATACATAGAGAATAATGCTATGTTCATCAAGGAAA
AGCCTAATATCCCGCGAAATAGTGCGTTGTTATGCTCTAAAGGAGACAAC
AAGGATTTCGTGGCATTCAATAGCAACCGTATACCACTTCAGCTTCAGTA
CTAATTTAACCTTATAGAGCTTTACTATATTTGCCATTATGACATATCGT
GCATATATCCGTCCCCTTTCGAACACTCACCTGGTGAGCATTCGTTCTCG
TGATATTTCATTGGATCTCGAGATGGTCGGGCTATCCATTGTCGTTCCGA
ACAGGTGACTCTAGCCAGCAGGTCCTCGATCACTGCACGTAGCCCGAACA
TAACGAGGCACGAGAATAGAGCAAAGAGGCTCCACGCTTTTCAGAACCAC
TTGTCGGACGGGTCCATCATCTCTCGGGTCGGTGTTGTGCAATAAGCTTT
TCATTATTTCCTTCAAAGTTGCTGATAACTTTTGTCATTGGTGTTGTCAA
TGGGGGGAGGGGGGGAAAGAAGGCTCACAAAAACTTTCCTCAATTCCTTC
CATTGTTGAACTCTGCATACAATTCTCGCAAGATGCACAACGTCCACAAG
AATCTTCAGAGGAATTCACCCAAACCTTCATGTTGCTTTCAGCTGCAAAC
TGGTCTTTACGAGGTATTCCGGCGAAGAACAAGTATAGATGTGATCTCTC
TCGTGTATCACATGTTCTAGAAGACTGAAAATCAGTTTTGAGCTACAGCT
GCAGCCTTCATCTGTTTACGTAGAATATTACTATCTTCACTTACTGCTAT
TAAATGATACAGCTCGTTCAATAGTTAATCATATGCTTGATACCCGCCAC
CCCGGCTGCCAAGTGTCGCTTAGCATCTCCTACCAAAACGAACAACACCT
GAACAACAACGACGAGTTGACGGGTTGTAAGCGACGGTACCACAGCAGCG
GTCATTGCGAGAAGCACGAACCACAACCCCATCACAGCATCTGTTGAAGG
TTGGGCTATACGCTCTTGTGCCGCAGCACCGGTCATTGCTAGACGCACGA
ACCACAACCCCATCACAGCATCTGTTGAAGGTTGGGCTATACGCTCTTGT
GCCGCAGCACCGGTCATTGCTAGACGCACGAACCACAACCCCATCACAGC
ATCTGTTGAAGGTTGGGCTATACGCTCTTGTGCCGCAGCACCGGTCATTG
CTAGAAGCACGAACCACAACCCCATCACAGCATCTGTTGAAGGTTGGGCT
ATACGCCCTCGTGCCGCAGCACCGGTCATTGCTAGAAGCACGAACCACAA
CACCATCACAGCATCTGTTGAAGGTTGGGCTATACGCTCTCGTGCCGCAG
CACCGGTCATTTCGAAAAGCTCGGACAACAACCCCATTACAGCATTTGGA
GGAGATTGAAGAGAAGCGGATTCCGTTGCATGTCTGA
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Coding sequence (CDS) from alignment at tig00000950_pilon:116756..118392+

>Ggra353.t1 ID=Ggra353.t1|Name=Ggra353.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000950_pilon:116756..118392+ (Gracilaria gracilis GNS1m male)
ATGTTTCGGAAAGGATATTCTAGTCCTGAAACTGGAATCATTGATGTAAT
ACTGTACATGGTACTGCTCATCCGCAAATGTGCTTCCACTTCCCTCTCCA
CGAAAGAAGTGAATGACTCCAACATGAAATGGGTGTTTACTCTTCAACAA
GGCTCTGTTTCGATTGTTGGCGGTTTGGCTGGATGCGAAGGGATTTCATT
CTACCTACCCGGGCCATACATAGAGAATAATGCTATGTTCATCAAGGAAA
AGCCTAATATCCCGCGAAATACGACGGTACCACAGCAGCGGTCATTGCGA
GAAGCACGAACCACAACCCCATCACAGCATCTGTTGAAGGTTGGGCTATA
CGCTCTTGTGCCGCAGCACCGGTCATTGCTAGACGCACGAACCACAACCC
CATCACAGCATCTGTTGAAGGTTGGGCTATACGCTCTTGTGCCGCAGCAC
CGGTCATTGCTAGAAGCACGAACCACAACCCCATCACAGCATCTGTTGAA
GGTTGGGCTATACGCTCTCGTGCCGCAGCACCGGTCATTTCGAAAAGCTC
GGACAACAACCCCATTACAGCATTTGGAGGAGATTGAAGAGAAGCGGATT
CCGTTGCATGTCTGA
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