Ggra3527.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3527.t1
Unique NameGgra3527.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length628
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:759102..761081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8364.ENSXETP00000030958
Preferred nameSCFD1
PFAMsSec1
Max annot lvl33208|Metazoa
KEGG koko:K19998
GOsGO:0000149,GO:0000902,GO:0001666,GO:0003002,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005801,GO:0005829,GO:0005886,GO:0006810,GO:0006888,GO:0006890,GO:0006892,GO:0006900,GO:0006901,GO:0006903,GO:0006950,GO:0006996,GO:0007275,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0008150,GO:0009628,GO:0009636,GO:0009653,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009953,GO:0009987,GO:0010506,GO:0010507,GO:0010639,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016241,GO:0016242,GO:0019222,GO:0019905,GO:0022607,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032989,GO:0033043,GO:0035220,GO:0035222,GO:0035295,GO:0036293,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0047485,GO:0048190,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051128,GO:0051129,GO:0051179,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0061024,GO:0065003,GO:0065007,GO:0070201,GO:0070482,GO:0071840,GO:0071944,GO:0090087,GO:0090114,GO:0097708,GO:1901998,GO:1902115,GO:1902116,GO:1902902,GO:2000785
Evalue6.49e-87
EggNOG OGsCOG5158@1|root,KOG1301@2759|Eukaryota,38BSP@33154|Opisthokonta,3BC7P@33208|Metazoa,3D2IJ@33213|Bilateria,488GH@7711|Chordata,492TB@7742|Vertebrata
DescriptionBelongs to the STXBP unc-18 SEC1 family
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3527Ggra3527Gracilaria gracilis GNS1m malegenetig00000059_pilon 759102..761081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3527.t1Ggra3527.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 759102..761081 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3527.t1.stop1Ggra3527.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 759102..759104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3527.t1.CDS1Ggra3527.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 759102..760034 -
Ggra3527.t1.CDS2Ggra3527.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 760131..761081 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3527.t1.exon1Ggra3527.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 759102..760034 -
Ggra3527.t1.exon2Ggra3527.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 760131..761081 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3527.t1.intron1Ggra3527.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 760035..760130 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3527.t1.start1Ggra3527.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 761079..761081 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3527.t1 ID=Ggra3527.t1|Name=Ggra3527.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=628bp
MAPSSAAFALRHSQRRALSRLLSLPDGCHWQVLLCDDFSHALVNTLFPPP
LLRKHAVTLHALLHRSQVPIPDAPALYIVAPSVENVALVARQLAPPALYH
SARLAFISSASSALLTALASQLPVPSPITFCADLYSHFISLDRNLFTLHI
PDSYVRLSPTAALDSLSPLLDRVVSGLFSVLLTVGVLPIIRAQPGGAAEA
VAARLDAKLRSSLALFQTSSLSNRAFSFRRPLLLLLDRDIDFLSMLHHTW
TYQALVHDCLHMHLQTVKFQSPEQQEKAHTVYQLDKEHDQFWRANAAAPF
PEVAEAIEKALTQYRNDLSKRKQNIDIHTNIATALLQNINRRSLDTFFEL
ESRIFAEQSTTSSIAAQQYKVTMLELLKGVRETSTGDKRGEGSATDRLRL
FLIYYTVFGQHLSETDMAEIRSVLQNAGADTSLIAHLGRLKGYRHDLVSE
TALAVGTINAARLKGLMTNVVNRGYRSFANVAQNAKKLILDQKKSFAVTE
VLDIFMSEQARARNESLASQILDGYLLFDPKLLPSAANIPREQTGLANTA
AGKRLSVGKNPQRTVFTDAIVFVVGGGNYVEYDNCMEALTPASNVTTAKN
VLYGTTELLTAEDFLSQLSTVAKRGAG*
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spliced messenger RNA

>Ggra3527.t1 ID=Ggra3527.t1|Name=Ggra3527.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00000059_pilon:759102..761081- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGTCGTCCGCCGCCTTCGCGCTGCGCCACTCGCAGCGTCGCGC
GCTCAGTCGCCTGCTGTCGCTGCCGGACGGCTGTCACTGGCAGGTGCTGC
TCTGCGACGACTTCTCGCACGCGCTGGTCAACACGCTGTTTCCGCCGCCC
TTGTTGCGGAAGCACGCCGTCACCTTACATGCGCTGCTACACCGTTCGCA
GGTGCCCATTCCAGATGCGCCGGCTCTGTACATCGTTGCGCCTTCCGTCG
AGAACGTTGCGCTCGTGGCGCGTCAACTGGCGCCGCCGGCGCTGTACCAC
TCGGCGAGGCTAGCGTTCATCAGTTCGGCGTCGTCTGCTTTGCTCACTGC
TCTGGCGTCACAGCTTCCCGTTCCGTCGCCCATTACGTTCTGCGCAGATC
TCTACTCGCACTTCATCAGTCTTGATCGCAATCTATTCACGCTTCATATA
CCCGATTCCTATGTTCGCCTATCCCCCACCGCTGCTTTGGACTCCTTATC
GCCTCTGCTTGACCGCGTTGTGTCTGGCTTATTCTCCGTTCTGCTCACTG
TTGGCGTGTTGCCCATCATCCGTGCACAGCCTGGCGGAGCTGCGGAAGCG
GTGGCCGCCCGCCTGGACGCCAAACTGCGCTCGAGTCTCGCCTTGTTTCA
GACCTCTTCGCTCTCGAACCGCGCTTTCTCCTTCCGCAGGCCGCTTCTGT
TGCTTTTAGATCGCGATATCGACTTTCTGTCCATGCTGCACCATACGTGG
ACATATCAAGCGCTTGTGCATGATTGCCTTCACATGCATCTGCAAACCGT
CAAGTTCCAATCCCCAGAGCAGCAGGAAAAGGCTCACACAGTTTACCAAC
TCGACAAAGAACACGACCAATTCTGGCGCGCCAACGCAGCCGCGCCGTTT
CCCGAGGTCGCTGAAGCCATCGAGAAAGCTCTCACTCAATATCGAAATGA
TCTATCGAAACGCAAACAAAACATCGACATTCATACCAACATTGCAACCG
CCTTGCTACAAAACATCAACCGCCGCTCACTCGACACCTTTTTCGAGCTC
GAGAGTCGCATCTTTGCTGAGCAGTCAACCACATCTTCTATTGCTGCTCA
ACAGTACAAAGTTACCATGCTTGAGCTGCTCAAAGGTGTTCGCGAAACCT
CTACGGGCGACAAGCGTGGAGAAGGTTCAGCCACGGATCGCCTGCGCCTG
TTTCTCATCTACTATACAGTCTTTGGCCAGCATCTGTCGGAGACTGATAT
GGCTGAAATCCGTTCCGTGCTTCAGAACGCAGGAGCAGATACCTCATTGA
TTGCTCATCTGGGCCGACTCAAAGGTTATAGACATGATCTTGTGAGCGAG
ACCGCCTTGGCAGTGGGCACCATTAATGCTGCCAGACTGAAGGGGCTCAT
GACTAACGTCGTTAACCGTGGATATCGCAGCTTTGCCAACGTGGCTCAAA
ACGCGAAGAAGCTCATCCTGGATCAGAAGAAGTCCTTCGCTGTTACTGAG
GTGCTGGATATCTTCATGAGTGAGCAAGCAAGGGCGAGGAACGAGTCACT
GGCCAGCCAAATTCTTGACGGTTATTTATTGTTTGACCCAAAGTTGCTCC
CATCTGCTGCTAATATACCTCGTGAGCAAACGGGTTTGGCGAACACGGCT
GCAGGAAAGCGTCTTTCGGTAGGGAAGAATCCACAGAGAACAGTGTTCAC
CGACGCCATTGTGTTTGTCGTTGGTGGTGGTAACTATGTAGAGTATGACA
ACTGTATGGAGGCTCTGACCCCGGCCTCGAATGTGACAACTGCGAAAAAC
GTTTTGTACGGCACGACTGAACTCTTGACTGCTGAGGACTTTCTGAGTCA
GCTGTCTACAGTTGCCAAGAGAGGCGCAGGTTAG
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protein sequence of Ggra3527.t1

>Ggra3527.t1 ID=Ggra3527.t1|Name=Ggra3527.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=628bp
MAPSSAAFALRHSQRRALSRLLSLPDGCHWQVLLCDDFSHALVNTLFPPP
LLRKHAVTLHALLHRSQVPIPDAPALYIVAPSVENVALVARQLAPPALYH
SARLAFISSASSALLTALASQLPVPSPITFCADLYSHFISLDRNLFTLHI
PDSYVRLSPTAALDSLSPLLDRVVSGLFSVLLTVGVLPIIRAQPGGAAEA
VAARLDAKLRSSLALFQTSSLSNRAFSFRRPLLLLLDRDIDFLSMLHHTW
TYQALVHDCLHMHLQTVKFQSPEQQEKAHTVYQLDKEHDQFWRANAAAPF
PEVAEAIEKALTQYRNDLSKRKQNIDIHTNIATALLQNINRRSLDTFFEL
ESRIFAEQSTTSSIAAQQYKVTMLELLKGVRETSTGDKRGEGSATDRLRL
FLIYYTVFGQHLSETDMAEIRSVLQNAGADTSLIAHLGRLKGYRHDLVSE
TALAVGTINAARLKGLMTNVVNRGYRSFANVAQNAKKLILDQKKSFAVTE
VLDIFMSEQARARNESLASQILDGYLLFDPKLLPSAANIPREQTGLANTA
AGKRLSVGKNPQRTVFTDAIVFVVGGGNYVEYDNCMEALTPASNVTTAKN
VLYGTTELLTAEDFLSQLSTVAKRGAG*
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mRNA from alignment at tig00000059_pilon:759102..761081-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3527.t1 ID=Ggra3527.t1|Name=Ggra3527.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00000059_pilon:759102..761081- (Gracilaria gracilis GNS1m male)
ATGGCGCCGTCGTCCGCCGCCTTCGCGCTGCGCCACTCGCAGCGTCGCGC
GCTCAGTCGCCTGCTGTCGCTGCCGGACGGCTGTCACTGGCAGGTGCTGC
TCTGCGACGACTTCTCGCACGCGCTGGTCAACACGCTGTTTCCGCCGCCC
TTGTTGCGGAAGCACGCCGTCACCTTACATGCGCTGCTACACCGTTCGCA
GGTGCCCATTCCAGATGCGCCGGCTCTGTACATCGTTGCGCCTTCCGTCG
AGAACGTTGCGCTCGTGGCGCGTCAACTGGCGCCGCCGGCGCTGTACCAC
TCGGCGAGGCTAGCGTTCATCAGTTCGGCGTCGTCTGCTTTGCTCACTGC
TCTGGCGTCACAGCTTCCCGTTCCGTCGCCCATTACGTTCTGCGCAGATC
TCTACTCGCACTTCATCAGTCTTGATCGCAATCTATTCACGCTTCATATA
CCCGATTCCTATGTTCGCCTATCCCCCACCGCTGCTTTGGACTCCTTATC
GCCTCTGCTTGACCGCGTTGTGTCTGGCTTATTCTCCGTTCTGCTCACTG
TTGGCGTGTTGCCCATCATCCGTGCACAGCCTGGCGGAGCTGCGGAAGCG
GTGGCCGCCCGCCTGGACGCCAAACTGCGCTCGAGTCTCGCCTTGTTTCA
GACCTCTTCGCTCTCGAACCGCGCTTTCTCCTTCCGCAGGCCGCTTCTGT
TGCTTTTAGATCGCGATATCGACTTTCTGTCCATGCTGCACCATACGTGG
ACATATCAAGCGCTTGTGCATGATTGCCTTCACATGCATCTGCAAACCGT
CAAGTTCCAATCCCCAGAGCAGCAGGAAAAGGCTCACACAGTTTACCAAC
TCGACAAAGAACACGACCAATTCTGGCGCGCCAACGCAGCCGCGCCGTTT
CCCGAGGTCGCTGAAGCCATCGAGAAAGCTCTCACTCAATATCGAAATGA
TGTAGACCAAATCAACCGCAGAGCAGCACCTGAGTCCTCTTCTCAGGCCC
CCGTCCGTACAGACCATTTGGCCAGCGCAATTTCGTCGCTGCCCGAGCTA
TCGAAACGCAAACAAAACATCGACATTCATACCAACATTGCAACCGCCTT
GCTACAAAACATCAACCGCCGCTCACTCGACACCTTTTTCGAGCTCGAGA
GTCGCATCTTTGCTGAGCAGTCAACCACATCTTCTATTGCTGCTCAACAG
TACAAAGTTACCATGCTTGAGCTGCTCAAAGGTGTTCGCGAAACCTCTAC
GGGCGACAAGCGTGGAGAAGGTTCAGCCACGGATCGCCTGCGCCTGTTTC
TCATCTACTATACAGTCTTTGGCCAGCATCTGTCGGAGACTGATATGGCT
GAAATCCGTTCCGTGCTTCAGAACGCAGGAGCAGATACCTCATTGATTGC
TCATCTGGGCCGACTCAAAGGTTATAGACATGATCTTGTGAGCGAGACCG
CCTTGGCAGTGGGCACCATTAATGCTGCCAGACTGAAGGGGCTCATGACT
AACGTCGTTAACCGTGGATATCGCAGCTTTGCCAACGTGGCTCAAAACGC
GAAGAAGCTCATCCTGGATCAGAAGAAGTCCTTCGCTGTTACTGAGGTGC
TGGATATCTTCATGAGTGAGCAAGCAAGGGCGAGGAACGAGTCACTGGCC
AGCCAAATTCTTGACGGTTATTTATTGTTTGACCCAAAGTTGCTCCCATC
TGCTGCTAATATACCTCGTGAGCAAACGGGTTTGGCGAACACGGCTGCAG
GAAAGCGTCTTTCGGTAGGGAAGAATCCACAGAGAACAGTGTTCACCGAC
GCCATTGTGTTTGTCGTTGGTGGTGGTAACTATGTAGAGTATGACAACTG
TATGGAGGCTCTGACCCCGGCCTCGAATGTGACAACTGCGAAAAACGTTT
TGTACGGCACGACTGAACTCTTGACTGCTGAGGACTTTCTGAGTCAGCTG
TCTACAGTTGCCAAGAGAGGCGCAGGTTAG
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Coding sequence (CDS) from alignment at tig00000059_pilon:759102..761081-

>Ggra3527.t1 ID=Ggra3527.t1|Name=Ggra3527.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1884bp|location=Sequence derived from alignment at tig00000059_pilon:759102..761081- (Gracilaria gracilis GNS1m male)
ATGGCGCCGTCGTCCGCCGCCTTCGCGCTGCGCCACTCGCAGCGTCGCGC
GCTCAGTCGCCTGCTGTCGCTGCCGGACGGCTGTCACTGGCAGGTGCTGC
TCTGCGACGACTTCTCGCACGCGCTGGTCAACACGCTGTTTCCGCCGCCC
TTGTTGCGGAAGCACGCCGTCACCTTACATGCGCTGCTACACCGTTCGCA
GGTGCCCATTCCAGATGCGCCGGCTCTGTACATCGTTGCGCCTTCCGTCG
AGAACGTTGCGCTCGTGGCGCGTCAACTGGCGCCGCCGGCGCTGTACCAC
TCGGCGAGGCTAGCGTTCATCAGTTCGGCGTCGTCTGCTTTGCTCACTGC
TCTGGCGTCACAGCTTCCCGTTCCGTCGCCCATTACGTTCTGCGCAGATC
TCTACTCGCACTTCATCAGTCTTGATCGCAATCTATTCACGCTTCATATA
CCCGATTCCTATGTTCGCCTATCCCCCACCGCTGCTTTGGACTCCTTATC
GCCTCTGCTTGACCGCGTTGTGTCTGGCTTATTCTCCGTTCTGCTCACTG
TTGGCGTGTTGCCCATCATCCGTGCACAGCCTGGCGGAGCTGCGGAAGCG
GTGGCCGCCCGCCTGGACGCCAAACTGCGCTCGAGTCTCGCCTTGTTTCA
GACCTCTTCGCTCTCGAACCGCGCTTTCTCCTTCCGCAGGCCGCTTCTGT
TGCTTTTAGATCGCGATATCGACTTTCTGTCCATGCTGCACCATACGTGG
ACATATCAAGCGCTTGTGCATGATTGCCTTCACATGCATCTGCAAACCGT
CAAGTTCCAATCCCCAGAGCAGCAGGAAAAGGCTCACACAGTTTACCAAC
TCGACAAAGAACACGACCAATTCTGGCGCGCCAACGCAGCCGCGCCGTTT
CCCGAGGTCGCTGAAGCCATCGAGAAAGCTCTCACTCAATATCGAAATGA
TCTATCGAAACGCAAACAAAACATCGACATTCATACCAACATTGCAACCG
CCTTGCTACAAAACATCAACCGCCGCTCACTCGACACCTTTTTCGAGCTC
GAGAGTCGCATCTTTGCTGAGCAGTCAACCACATCTTCTATTGCTGCTCA
ACAGTACAAAGTTACCATGCTTGAGCTGCTCAAAGGTGTTCGCGAAACCT
CTACGGGCGACAAGCGTGGAGAAGGTTCAGCCACGGATCGCCTGCGCCTG
TTTCTCATCTACTATACAGTCTTTGGCCAGCATCTGTCGGAGACTGATAT
GGCTGAAATCCGTTCCGTGCTTCAGAACGCAGGAGCAGATACCTCATTGA
TTGCTCATCTGGGCCGACTCAAAGGTTATAGACATGATCTTGTGAGCGAG
ACCGCCTTGGCAGTGGGCACCATTAATGCTGCCAGACTGAAGGGGCTCAT
GACTAACGTCGTTAACCGTGGATATCGCAGCTTTGCCAACGTGGCTCAAA
ACGCGAAGAAGCTCATCCTGGATCAGAAGAAGTCCTTCGCTGTTACTGAG
GTGCTGGATATCTTCATGAGTGAGCAAGCAAGGGCGAGGAACGAGTCACT
GGCCAGCCAAATTCTTGACGGTTATTTATTGTTTGACCCAAAGTTGCTCC
CATCTGCTGCTAATATACCTCGTGAGCAAACGGGTTTGGCGAACACGGCT
GCAGGAAAGCGTCTTTCGGTAGGGAAGAATCCACAGAGAACAGTGTTCAC
CGACGCCATTGTGTTTGTCGTTGGTGGTGGTAACTATGTAGAGTATGACA
ACTGTATGGAGGCTCTGACCCCGGCCTCGAATGTGACAACTGCGAAAAAC
GTTTTGTACGGCACGACTGAACTCTTGACTGCTGAGGACTTTCTGAGTCA
GCTGTCTACAGTTGCCAAGAGAGGCGCAGGTTAG
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