Ggra3524.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3524.t1
Unique Name	Ggra3524.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	590

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:753826..755595 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LFV8
Preferred name	ATAD3A
PFAMs	AAA,DUF3523
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17681
GOs	GO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003
Evalue	1.02e-154
EggNOG OGs	COG1223@1\|root,KOG0742@2759\|Eukaryota
Description	ATP binding
COG category	O
BRITE	ko00000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3524	Ggra3524	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 753826..755595 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3524.t1.start1	Ggra3524.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 753826..753828 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3524.t1.CDS1	Ggra3524.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 753826..755595 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3524.t1.exon1	Ggra3524.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 753826..755595 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3524.t1.stop1	Ggra3524.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 755593..755595 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3524.t1	Ggra3524.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 753826..755595 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:753826..755595+
coding sequence from alignment at tig00000059_pilon:753826..755595+

mRNA sequence

>Ggra3524.t1 ID=Ggra3524.t1|Name=Ggra3524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=590bp
MFKNLGGGQNSGQNKATTAESFSGTVDPTGLERAAKAAREIDSSPNARMA
LEIVREQEKTKQSELEAKSSELRAFESQQRAKNIEIQGDQQRKTLEKQAE
YARGQELYRDKLERERQKDVMGMQLQAQRQLKEEERKKDEESVMRMEAIR
RKTLEYETALRQQADIAKAKAEAEGRIEQERRNHDLIMQQKRLELREARK
TTIESIKVATSSVGAGLSSFVSDREKVATVVGGLSAAAAGIYFARAAASV
VGGYVAARLGKPSLVRDTSRITALSAFREPIVTGRNLWHRFQTQDAERAL
DGVVLASTTKDRLQRIARATKNSRAHKAPFRNILLAGPPGTGKTLFAKGL
ARESGLEYAIFTGGDLAPLGASAVTELHKLFDWASTTRKGLLLFIDEADA
FLRTRSSATGATEEMRNALNAFLYRTGQPTTKFMLMMATNRPHEFDEAAA
DRVDDVVPFYLPGPEERRDMLTLYVDRLLKKPLVPIKMSADEPWDGFYTE
VVRESEGFSGREMEKLVIGWQAAGYGTRSAKLSITDAKQVLRDHVEQKSM
KESWAQSQREEGTGIVPEYTRQTGTTRATAQTSPMYTTA*

spliced messenger RNA

>Ggra3524.t1 ID=Ggra3524.t1|Name=Ggra3524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1770bp|location=Sequence derived from alignment at tig00000059_pilon:753826..755595+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGAACCTTGGGGGCGGCCAGAACTCTGGCCAGAATAAGGCCAC
GACGGCCGAGTCCTTCTCTGGCACCGTTGATCCCACTGGTCTCGAGCGCG
CCGCAAAGGCCGCTCGTGAAATCGATTCGTCGCCAAATGCACGCATGGCG
TTGGAGATCGTGCGCGAGCAAGAGAAGACCAAGCAATCTGAGCTGGAAGC
CAAATCTTCTGAGTTGCGCGCGTTTGAATCGCAACAGCGCGCAAAGAACA
TAGAGATTCAGGGCGACCAACAACGAAAGACGCTCGAGAAACAGGCCGAA
TACGCGAGGGGACAGGAGCTTTACAGGGATAAGCTGGAGAGGGAGAGACA
AAAGGATGTCATGGGTATGCAATTGCAGGCGCAACGACAGTTAAAGGAGG
AGGAGAGAAAGAAGGATGAGGAAAGCGTTATGCGCATGGAAGCTATTAGA
CGCAAGACTCTGGAGTATGAAACTGCCCTTCGTCAACAGGCTGACATTGC
GAAAGCAAAGGCTGAAGCAGAGGGTCGAATTGAACAAGAACGACGCAATC
ACGATCTTATCATGCAGCAAAAGAGATTGGAACTTAGAGAGGCTCGAAAG
ACTACTATCGAAAGTATCAAGGTCGCCACTAGTAGTGTAGGTGCTGGCCT
TTCGTCTTTTGTCTCTGATCGAGAAAAGGTGGCCACTGTTGTTGGGGGTT
TGTCGGCAGCAGCGGCAGGCATATATTTTGCTCGCGCAGCGGCATCGGTT
GTTGGTGGATATGTTGCTGCTCGTCTTGGAAAGCCGTCACTGGTTCGGGA
TACCAGTCGAATAACCGCTCTATCTGCATTCCGTGAGCCTATTGTCACTG
GCAGGAACCTTTGGCATCGCTTCCAAACACAGGATGCGGAGCGTGCGCTC
GATGGCGTTGTTCTTGCCTCCACAACCAAGGACAGACTGCAGAGAATCGC
CCGGGCTACTAAGAATTCGCGAGCGCACAAGGCACCGTTTAGAAATATCT
TGCTTGCTGGCCCTCCAGGAACAGGGAAGACGCTTTTCGCCAAGGGGCTT
GCAAGAGAAAGTGGTTTGGAGTATGCGATCTTCACAGGCGGTGACCTGGC
ACCGCTCGGCGCGAGCGCTGTGACAGAGCTTCATAAGCTTTTCGATTGGG
CATCAACAACCCGCAAGGGCCTGTTACTATTTATTGACGAGGCCGATGCG
TTTTTGAGAACCAGGAGTTCTGCAACTGGTGCGACTGAGGAGATGCGCAA
TGCATTGAATGCCTTTTTGTATAGGACAGGGCAACCGACCACAAAATTCA
TGCTCATGATGGCAACGAATCGTCCCCATGAGTTCGATGAAGCAGCTGCT
GATCGTGTTGACGACGTGGTTCCCTTCTATTTGCCTGGCCCAGAAGAAAG
GCGCGACATGCTCACTCTCTATGTAGATCGCCTTTTGAAGAAACCATTAG
TACCTATCAAGATGTCTGCTGATGAACCATGGGACGGCTTCTACACTGAA
GTCGTGAGGGAGAGTGAAGGTTTCAGTGGTCGTGAAATGGAAAAACTGGT
GATAGGTTGGCAAGCTGCAGGATATGGTACACGCTCTGCCAAATTGAGCA
TTACTGATGCTAAACAAGTTTTGCGGGATCACGTTGAACAGAAGTCTATG
AAAGAGAGTTGGGCTCAGTCCCAAAGAGAAGAAGGCACCGGAATCGTCCC
AGAGTACACAAGACAAACAGGCACAACCAGAGCGACAGCTCAAACGAGTC
CAATGTACACAACAGCATGA

protein sequence of Ggra3524.t1

>Ggra3524.t1 ID=Ggra3524.t1|Name=Ggra3524.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=590bp
MFKNLGGGQNSGQNKATTAESFSGTVDPTGLERAAKAAREIDSSPNARMA
LEIVREQEKTKQSELEAKSSELRAFESQQRAKNIEIQGDQQRKTLEKQAE
YARGQELYRDKLERERQKDVMGMQLQAQRQLKEEERKKDEESVMRMEAIR
RKTLEYETALRQQADIAKAKAEAEGRIEQERRNHDLIMQQKRLELREARK
TTIESIKVATSSVGAGLSSFVSDREKVATVVGGLSAAAAGIYFARAAASV
VGGYVAARLGKPSLVRDTSRITALSAFREPIVTGRNLWHRFQTQDAERAL
DGVVLASTTKDRLQRIARATKNSRAHKAPFRNILLAGPPGTGKTLFAKGL
ARESGLEYAIFTGGDLAPLGASAVTELHKLFDWASTTRKGLLLFIDEADA
FLRTRSSATGATEEMRNALNAFLYRTGQPTTKFMLMMATNRPHEFDEAAA
DRVDDVVPFYLPGPEERRDMLTLYVDRLLKKPLVPIKMSADEPWDGFYTE
VVRESEGFSGREMEKLVIGWQAAGYGTRSAKLSITDAKQVLRDHVEQKSM
KESWAQSQREEGTGIVPEYTRQTGTTRATAQTSPMYTTA*

mRNA from alignment at tig00000059_pilon:753826..755595+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3524.t1 ID=Ggra3524.t1|Name=Ggra3524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1770bp|location=Sequence derived from alignment at tig00000059_pilon:753826..755595+ (Gracilaria gracilis GNS1m male)
ATGTTCAAGAACCTTGGGGGCGGCCAGAACTCTGGCCAGAATAAGGCCAC
GACGGCCGAGTCCTTCTCTGGCACCGTTGATCCCACTGGTCTCGAGCGCG
CCGCAAAGGCCGCTCGTGAAATCGATTCGTCGCCAAATGCACGCATGGCG
TTGGAGATCGTGCGCGAGCAAGAGAAGACCAAGCAATCTGAGCTGGAAGC
CAAATCTTCTGAGTTGCGCGCGTTTGAATCGCAACAGCGCGCAAAGAACA
TAGAGATTCAGGGCGACCAACAACGAAAGACGCTCGAGAAACAGGCCGAA
TACGCGAGGGGACAGGAGCTTTACAGGGATAAGCTGGAGAGGGAGAGACA
AAAGGATGTCATGGGTATGCAATTGCAGGCGCAACGACAGTTAAAGGAGG
AGGAGAGAAAGAAGGATGAGGAAAGCGTTATGCGCATGGAAGCTATTAGA
CGCAAGACTCTGGAGTATGAAACTGCCCTTCGTCAACAGGCTGACATTGC
GAAAGCAAAGGCTGAAGCAGAGGGTCGAATTGAACAAGAACGACGCAATC
ACGATCTTATCATGCAGCAAAAGAGATTGGAACTTAGAGAGGCTCGAAAG
ACTACTATCGAAAGTATCAAGGTCGCCACTAGTAGTGTAGGTGCTGGCCT
TTCGTCTTTTGTCTCTGATCGAGAAAAGGTGGCCACTGTTGTTGGGGGTT
TGTCGGCAGCAGCGGCAGGCATATATTTTGCTCGCGCAGCGGCATCGGTT
GTTGGTGGATATGTTGCTGCTCGTCTTGGAAAGCCGTCACTGGTTCGGGA
TACCAGTCGAATAACCGCTCTATCTGCATTCCGTGAGCCTATTGTCACTG
GCAGGAACCTTTGGCATCGCTTCCAAACACAGGATGCGGAGCGTGCGCTC
GATGGCGTTGTTCTTGCCTCCACAACCAAGGACAGACTGCAGAGAATCGC
CCGGGCTACTAAGAATTCGCGAGCGCACAAGGCACCGTTTAGAAATATCT
TGCTTGCTGGCCCTCCAGGAACAGGGAAGACGCTTTTCGCCAAGGGGCTT
GCAAGAGAAAGTGGTTTGGAGTATGCGATCTTCACAGGCGGTGACCTGGC
ACCGCTCGGCGCGAGCGCTGTGACAGAGCTTCATAAGCTTTTCGATTGGG
CATCAACAACCCGCAAGGGCCTGTTACTATTTATTGACGAGGCCGATGCG
TTTTTGAGAACCAGGAGTTCTGCAACTGGTGCGACTGAGGAGATGCGCAA
TGCATTGAATGCCTTTTTGTATAGGACAGGGCAACCGACCACAAAATTCA
TGCTCATGATGGCAACGAATCGTCCCCATGAGTTCGATGAAGCAGCTGCT
GATCGTGTTGACGACGTGGTTCCCTTCTATTTGCCTGGCCCAGAAGAAAG
GCGCGACATGCTCACTCTCTATGTAGATCGCCTTTTGAAGAAACCATTAG
TACCTATCAAGATGTCTGCTGATGAACCATGGGACGGCTTCTACACTGAA
GTCGTGAGGGAGAGTGAAGGTTTCAGTGGTCGTGAAATGGAAAAACTGGT
GATAGGTTGGCAAGCTGCAGGATATGGTACACGCTCTGCCAAATTGAGCA
TTACTGATGCTAAACAAGTTTTGCGGGATCACGTTGAACAGAAGTCTATG
AAAGAGAGTTGGGCTCAGTCCCAAAGAGAAGAAGGCACCGGAATCGTCCC
AGAGTACACAAGACAAACAGGCACAACCAGAGCGACAGCTCAAACGAGTC
CAATGTACACAACAGCATGA

Coding sequence (CDS) from alignment at tig00000059_pilon:753826..755595+

>Ggra3524.t1 ID=Ggra3524.t1|Name=Ggra3524.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1770bp|location=Sequence derived from alignment at tig00000059_pilon:753826..755595+ (Gracilaria gracilis GNS1m male)
ATGTTCAAGAACCTTGGGGGCGGCCAGAACTCTGGCCAGAATAAGGCCAC
GACGGCCGAGTCCTTCTCTGGCACCGTTGATCCCACTGGTCTCGAGCGCG
CCGCAAAGGCCGCTCGTGAAATCGATTCGTCGCCAAATGCACGCATGGCG
TTGGAGATCGTGCGCGAGCAAGAGAAGACCAAGCAATCTGAGCTGGAAGC
CAAATCTTCTGAGTTGCGCGCGTTTGAATCGCAACAGCGCGCAAAGAACA
TAGAGATTCAGGGCGACCAACAACGAAAGACGCTCGAGAAACAGGCCGAA
TACGCGAGGGGACAGGAGCTTTACAGGGATAAGCTGGAGAGGGAGAGACA
AAAGGATGTCATGGGTATGCAATTGCAGGCGCAACGACAGTTAAAGGAGG
AGGAGAGAAAGAAGGATGAGGAAAGCGTTATGCGCATGGAAGCTATTAGA
CGCAAGACTCTGGAGTATGAAACTGCCCTTCGTCAACAGGCTGACATTGC
GAAAGCAAAGGCTGAAGCAGAGGGTCGAATTGAACAAGAACGACGCAATC
ACGATCTTATCATGCAGCAAAAGAGATTGGAACTTAGAGAGGCTCGAAAG
ACTACTATCGAAAGTATCAAGGTCGCCACTAGTAGTGTAGGTGCTGGCCT
TTCGTCTTTTGTCTCTGATCGAGAAAAGGTGGCCACTGTTGTTGGGGGTT
TGTCGGCAGCAGCGGCAGGCATATATTTTGCTCGCGCAGCGGCATCGGTT
GTTGGTGGATATGTTGCTGCTCGTCTTGGAAAGCCGTCACTGGTTCGGGA
TACCAGTCGAATAACCGCTCTATCTGCATTCCGTGAGCCTATTGTCACTG
GCAGGAACCTTTGGCATCGCTTCCAAACACAGGATGCGGAGCGTGCGCTC
GATGGCGTTGTTCTTGCCTCCACAACCAAGGACAGACTGCAGAGAATCGC
CCGGGCTACTAAGAATTCGCGAGCGCACAAGGCACCGTTTAGAAATATCT
TGCTTGCTGGCCCTCCAGGAACAGGGAAGACGCTTTTCGCCAAGGGGCTT
GCAAGAGAAAGTGGTTTGGAGTATGCGATCTTCACAGGCGGTGACCTGGC
ACCGCTCGGCGCGAGCGCTGTGACAGAGCTTCATAAGCTTTTCGATTGGG
CATCAACAACCCGCAAGGGCCTGTTACTATTTATTGACGAGGCCGATGCG
TTTTTGAGAACCAGGAGTTCTGCAACTGGTGCGACTGAGGAGATGCGCAA
TGCATTGAATGCCTTTTTGTATAGGACAGGGCAACCGACCACAAAATTCA
TGCTCATGATGGCAACGAATCGTCCCCATGAGTTCGATGAAGCAGCTGCT
GATCGTGTTGACGACGTGGTTCCCTTCTATTTGCCTGGCCCAGAAGAAAG
GCGCGACATGCTCACTCTCTATGTAGATCGCCTTTTGAAGAAACCATTAG
TACCTATCAAGATGTCTGCTGATGAACCATGGGACGGCTTCTACACTGAA
GTCGTGAGGGAGAGTGAAGGTTTCAGTGGTCGTGAAATGGAAAAACTGGT
GATAGGTTGGCAAGCTGCAGGATATGGTACACGCTCTGCCAAATTGAGCA
TTACTGATGCTAAACAAGTTTTGCGGGATCACGTTGAACAGAAGTCTATG
AAAGAGAGTTGGGCTCAGTCCCAAAGAGAAGAAGGCACCGGAATCGTCCC
AGAGTACACAAGACAAACAGGCACAACCAGAGCGACAGCTCAAACGAGTC
CAATGTACACAACAGCATGA