Ggra3519.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3519.t1
Unique NameGgra3519.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:685019..685678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003060703.1
PFAMsmTERF
Max annot lvl3041|Chlorophyta
Evalue6.69e-25
EggNOG OGs2CNWX@1|root,2QYF3@2759|Eukaryota,37Q89@33090|Viridiplantae,34IE6@3041|Chlorophyta
DescriptionMitochondrial transcription termination factor family protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3519Ggra3519Gracilaria gracilis GNS1m malegenetig00000059_pilon 685019..685678 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3519.t1.start1Ggra3519.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 685019..685021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3519.t1.CDS1Ggra3519.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 685019..685678 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3519.t1.exon1Ggra3519.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 685019..685678 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3519.t1.stop1Ggra3519.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 685676..685678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3519.t1Ggra3519.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 685019..685678 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3519.t1 ID=Ggra3519.t1|Name=Ggra3519.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=220bp
MDALTPPCTPPPSFVPPRAVPLRGWWHAPHVDHRRRGRRCYVPYVERRHA
RSSPLSSAAGPPAADPPAAAHPPAELPAEQLAAWQAARAVLQQQQQLDDA
AAERVLRRAFGWGAQRYWRGRVKRELPDAQLLQRRLTLLAERVPLDEEQL
CTVVLAFPEVLRLDAHRLESNVCRVEREVGRAGPSRVVRSVCDNPPVLGF
DFDCEGDCVGECSRCWVRF*
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spliced messenger RNA

>Ggra3519.t1 ID=Ggra3519.t1|Name=Ggra3519.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000059_pilon:685019..685678+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCTCTCACGCCTCCTTGCACGCCGCCGCCGTCGTTCGTGCCGCC
GCGCGCCGTGCCGCTGCGAGGGTGGTGGCACGCGCCGCACGTCGACCACC
GTCGCCGTGGCCGCCGCTGCTATGTGCCGTACGTTGAACGTCGCCACGCC
CGTTCGTCGCCACTATCATCCGCCGCAGGCCCGCCCGCCGCTGACCCGCC
CGCCGCGGCGCACCCGCCCGCCGAGCTGCCCGCCGAGCAGCTGGCGGCGT
GGCAAGCCGCGCGCGCCGTGCTGCAGCAGCAGCAGCAGCTGGACGACGCC
GCGGCCGAGCGCGTGCTGCGCCGCGCCTTCGGCTGGGGCGCGCAGCGCTA
CTGGCGCGGCCGCGTCAAGCGCGAGCTGCCGGACGCGCAGCTGCTGCAGC
GCCGCCTGACGCTGCTGGCGGAGCGCGTGCCGCTCGATGAAGAGCAGCTC
TGCACCGTTGTGTTGGCCTTCCCGGAGGTGCTGCGCCTGGACGCGCACCG
CTTGGAGAGCAACGTTTGTCGCGTGGAACGCGAGGTCGGCCGCGCTGGCC
CTTCTCGAGTTGTGCGCAGCGTTTGCGATAACCCGCCCGTGCTGGGCTTC
GATTTTGACTGCGAGGGCGACTGCGTGGGCGAGTGCTCTCGGTGCTGGGT
GCGTTTTTGA
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protein sequence of Ggra3519.t1

>Ggra3519.t1 ID=Ggra3519.t1|Name=Ggra3519.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MDALTPPCTPPPSFVPPRAVPLRGWWHAPHVDHRRRGRRCYVPYVERRHA
RSSPLSSAAGPPAADPPAAAHPPAELPAEQLAAWQAARAVLQQQQQLDDA
AAERVLRRAFGWGAQRYWRGRVKRELPDAQLLQRRLTLLAERVPLDEEQL
CTVVLAFPEVLRLDAHRLESNVCRVEREVGRAGPSRVVRSVCDNPPVLGF
DFDCEGDCVGECSRCWVRF*
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mRNA from alignment at tig00000059_pilon:685019..685678+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3519.t1 ID=Ggra3519.t1|Name=Ggra3519.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000059_pilon:685019..685678+ (Gracilaria gracilis GNS1m male)
ATGGATGCTCTCACGCCTCCTTGCACGCCGCCGCCGTCGTTCGTGCCGCC
GCGCGCCGTGCCGCTGCGAGGGTGGTGGCACGCGCCGCACGTCGACCACC
GTCGCCGTGGCCGCCGCTGCTATGTGCCGTACGTTGAACGTCGCCACGCC
CGTTCGTCGCCACTATCATCCGCCGCAGGCCCGCCCGCCGCTGACCCGCC
CGCCGCGGCGCACCCGCCCGCCGAGCTGCCCGCCGAGCAGCTGGCGGCGT
GGCAAGCCGCGCGCGCCGTGCTGCAGCAGCAGCAGCAGCTGGACGACGCC
GCGGCCGAGCGCGTGCTGCGCCGCGCCTTCGGCTGGGGCGCGCAGCGCTA
CTGGCGCGGCCGCGTCAAGCGCGAGCTGCCGGACGCGCAGCTGCTGCAGC
GCCGCCTGACGCTGCTGGCGGAGCGCGTGCCGCTCGATGAAGAGCAGCTC
TGCACCGTTGTGTTGGCCTTCCCGGAGGTGCTGCGCCTGGACGCGCACCG
CTTGGAGAGCAACGTTTGTCGCGTGGAACGCGAGGTCGGCCGCGCTGGCC
CTTCTCGAGTTGTGCGCAGCGTTTGCGATAACCCGCCCGTGCTGGGCTTC
GATTTTGACTGCGAGGGCGACTGCGTGGGCGAGTGCTCTCGGTGCTGGGT
GCGTTTTTGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:685019..685678+

>Ggra3519.t1 ID=Ggra3519.t1|Name=Ggra3519.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00000059_pilon:685019..685678+ (Gracilaria gracilis GNS1m male)
ATGGATGCTCTCACGCCTCCTTGCACGCCGCCGCCGTCGTTCGTGCCGCC
GCGCGCCGTGCCGCTGCGAGGGTGGTGGCACGCGCCGCACGTCGACCACC
GTCGCCGTGGCCGCCGCTGCTATGTGCCGTACGTTGAACGTCGCCACGCC
CGTTCGTCGCCACTATCATCCGCCGCAGGCCCGCCCGCCGCTGACCCGCC
CGCCGCGGCGCACCCGCCCGCCGAGCTGCCCGCCGAGCAGCTGGCGGCGT
GGCAAGCCGCGCGCGCCGTGCTGCAGCAGCAGCAGCAGCTGGACGACGCC
GCGGCCGAGCGCGTGCTGCGCCGCGCCTTCGGCTGGGGCGCGCAGCGCTA
CTGGCGCGGCCGCGTCAAGCGCGAGCTGCCGGACGCGCAGCTGCTGCAGC
GCCGCCTGACGCTGCTGGCGGAGCGCGTGCCGCTCGATGAAGAGCAGCTC
TGCACCGTTGTGTTGGCCTTCCCGGAGGTGCTGCGCCTGGACGCGCACCG
CTTGGAGAGCAACGTTTGTCGCGTGGAACGCGAGGTCGGCCGCGCTGGCC
CTTCTCGAGTTGTGCGCAGCGTTTGCGATAACCCGCCCGTGCTGGGCTTC
GATTTTGACTGCGAGGGCGACTGCGTGGGCGAGTGCTCTCGGTGCTGGGT
GCGTTTTTGA
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