Ggra3512.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3512.t1
Unique NameGgra3512.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:580502..581523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009794190.1
PFAMsPP2C
Max annot lvl35493|Streptophyta
Evalue3.25e-15
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota,37K1F@33090|Viridiplantae,3G7ZS@35493|Streptophyta,44GYF@71274|asterids
Descriptionprotein phosphatase 2C 72
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3512Ggra3512Gracilaria gracilis GNS1m malegenetig00000059_pilon 580502..581523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3512.t1Ggra3512.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 580502..581523 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3512.t1.stop1Ggra3512.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 580502..580504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3512.t1.CDS1Ggra3512.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 580502..580789 -
Ggra3512.t1.CDS2Ggra3512.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 580913..581232 -
Ggra3512.t1.CDS3Ggra3512.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000059_pilon 581301..581523 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3512.t1.exon1Ggra3512.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 580502..580789 -
Ggra3512.t1.exon2Ggra3512.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 580913..581232 -
Ggra3512.t1.exon3Ggra3512.t1.exon3Gracilaria gracilis GNS1m maleexontig00000059_pilon 581301..581523 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3512.t1.intron1Ggra3512.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 580790..580912 -
Ggra3512.t1.intron2Ggra3512.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000059_pilon 581233..581300 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3512.t1.start1Ggra3512.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 581521..581523 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3512.t1 ID=Ggra3512.t1|Name=Ggra3512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=277bp
MFRKFFDLLIAPKCFARSAARSVTGRMHRADNIPNQDSSFILNSPDTQPR
QRRKLRENRRGVRGLFAIGVFDGHDDQKNMSLEQTLRRAFDETISALNSA
SCSEDSGTTGSVVVVRNEDVVVANVGDSAVYCVSRTKWTRRRRVNYASPM
HRPTNPAEAERVKLCGGRVQDGYVVDEYATQGIGVSRTIGDRDMRRFGCI
PDPTYHSFELQRMDYAFVVASDGLWDVPGLDDEAVVMKATRGVGVTPHQV
CNRLQKKAKVQQGPSDDCTIACMIVI*
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spliced messenger RNA

>Ggra3512.t1 ID=Ggra3512.t1|Name=Ggra3512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000059_pilon:580502..581523- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGCAAGTTCTTTGACCTACTAATCGCGCCAAAGTGTTTCGCCAG
AAGCGCTGCCAGATCCGTCACCGGCAGAATGCACCGGGCGGACAACATTC
CAAATCAAGACAGCTCGTTCATACTAAACTCCCCCGACACGCAACCGCGC
CAACGCCGCAAGTTGCGCGAAAACCGTAGAGGAGTACGAGGTCTGTTCGC
CATTGGTGTGTTCGACGGACACGATGACCAGAAGAATATGTCATTAGAAC
AAACTCTGAGACGAGCTTTCGACGAGACCATATCGGCGTTGAATTCGGCC
TCGTGTAGTGAGGACAGCGGCACCACCGGATCGGTGGTTGTTGTGAGGAA
CGAGGATGTGGTGGTGGCCAACGTCGGTGATTCGGCCGTTTACTGCGTGT
CTCGAACGAAATGGACCCGCCGTCGTCGAGTTAACTACGCCAGCCCGATG
CACAGGCCCACCAATCCTGCCGAAGCTGAGCGGGTCAAGTTGTGCGGCGG
ACGGGTTCAGGACGGATACGTCGTCGATGAATATGCCACACAGGGAATCG
GAGTCAGCCGAACAATCGGAGACCGGGATATGCGCCGGTTCGGATGCATT
CCAGACCCGACATATCACAGCTTCGAGCTGCAGAGGATGGATTACGCGTT
TGTTGTAGCTTCTGATGGACTTTGGGATGTGCCTGGGCTTGACGATGAGG
CAGTTGTAATGAAAGCAACCAGGGGGGTTGGTGTCACTCCCCACCAGGTT
TGTAATCGGTTGCAAAAGAAGGCAAAAGTCCAGCAAGGTCCATCCGACGA
TTGCACTATCGCTTGTATGATTGTGATCTAG
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protein sequence of Ggra3512.t1

>Ggra3512.t1 ID=Ggra3512.t1|Name=Ggra3512.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=277bp
MFRKFFDLLIAPKCFARSAARSVTGRMHRADNIPNQDSSFILNSPDTQPR
QRRKLRENRRGVRGLFAIGVFDGHDDQKNMSLEQTLRRAFDETISALNSA
SCSEDSGTTGSVVVVRNEDVVVANVGDSAVYCVSRTKWTRRRRVNYASPM
HRPTNPAEAERVKLCGGRVQDGYVVDEYATQGIGVSRTIGDRDMRRFGCI
PDPTYHSFELQRMDYAFVVASDGLWDVPGLDDEAVVMKATRGVGVTPHQV
CNRLQKKAKVQQGPSDDCTIACMIVI*
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mRNA from alignment at tig00000059_pilon:580502..581523-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3512.t1 ID=Ggra3512.t1|Name=Ggra3512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1022bp|location=Sequence derived from alignment at tig00000059_pilon:580502..581523- (Gracilaria gracilis GNS1m male)
ATGTTTCGCAAGTTCTTTGACCTACTAATCGCGCCAAAGTGTTTCGCCAG
AAGCGCTGCCAGATCCGTCACCGGCAGAATGCACCGGGCGGACAACATTC
CAAATCAAGACAGCTCGTTCATACTAAACTCCCCCGACACGCAACCGCGC
CAACGCCGCAAGTTGCGCGAAAACCGTAGAGGAGTACGAGGTCTGTTCGC
CATTGGTGTGTTCGACGGACACGGTCCGCGGGGGCATGAAGCAAGTGCGC
TGGCCGCCGAACGCATGCGATTTGCTCTCAGTCGCTTTCAGATGACCAGA
AGAATATGTCATTAGAACAAACTCTGAGACGAGCTTTCGACGAGACCATA
TCGGCGTTGAATTCGGCCTCGTGTAGTGAGGACAGCGGCACCACCGGATC
GGTGGTTGTTGTGAGGAACGAGGATGTGGTGGTGGCCAACGTCGGTGATT
CGGCCGTTTACTGCGTGTCTCGAACGAAATGGACCCGCCGTCGTCGAGTT
AACTACGCCAGCCCGATGCACAGGCCCACCAATCCTGCCGAAGCTGAGCG
GGTCAAGTTGTGCGGCGGACGGGTTCAGGACGGATACGTCGTCGATGAAT
ATGCCACACAGGTAAGTGATCTTCCCTGTGTAGGTATATATACCTAACTT
TCGTTTCTCGATCCAGCGTCTGTTTACTAAGATTGTATCTCCCATTTGTT
TTTCATGTTTTTTTTTTTGTTTTCGTGTGCGCAGGGAATCGGAGTCAGCC
GAACAATCGGAGACCGGGATATGCGCCGGTTCGGATGCATTCCAGACCCG
ACATATCACAGCTTCGAGCTGCAGAGGATGGATTACGCGTTTGTTGTAGC
TTCTGATGGACTTTGGGATGTGCCTGGGCTTGACGATGAGGCAGTTGTAA
TGAAAGCAACCAGGGGGGTTGGTGTCACTCCCCACCAGGTTTGTAATCGG
TTGCAAAAGAAGGCAAAAGTCCAGCAAGGTCCATCCGACGATTGCACTAT
CGCTTGTATGATTGTGATCTAG
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Coding sequence (CDS) from alignment at tig00000059_pilon:580502..581523-

>Ggra3512.t1 ID=Ggra3512.t1|Name=Ggra3512.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00000059_pilon:580502..581523- (Gracilaria gracilis GNS1m male)
ATGTTTCGCAAGTTCTTTGACCTACTAATCGCGCCAAAGTGTTTCGCCAG
AAGCGCTGCCAGATCCGTCACCGGCAGAATGCACCGGGCGGACAACATTC
CAAATCAAGACAGCTCGTTCATACTAAACTCCCCCGACACGCAACCGCGC
CAACGCCGCAAGTTGCGCGAAAACCGTAGAGGAGTACGAGGTCTGTTCGC
CATTGGTGTGTTCGACGGACACGATGACCAGAAGAATATGTCATTAGAAC
AAACTCTGAGACGAGCTTTCGACGAGACCATATCGGCGTTGAATTCGGCC
TCGTGTAGTGAGGACAGCGGCACCACCGGATCGGTGGTTGTTGTGAGGAA
CGAGGATGTGGTGGTGGCCAACGTCGGTGATTCGGCCGTTTACTGCGTGT
CTCGAACGAAATGGACCCGCCGTCGTCGAGTTAACTACGCCAGCCCGATG
CACAGGCCCACCAATCCTGCCGAAGCTGAGCGGGTCAAGTTGTGCGGCGG
ACGGGTTCAGGACGGATACGTCGTCGATGAATATGCCACACAGGGAATCG
GAGTCAGCCGAACAATCGGAGACCGGGATATGCGCCGGTTCGGATGCATT
CCAGACCCGACATATCACAGCTTCGAGCTGCAGAGGATGGATTACGCGTT
TGTTGTAGCTTCTGATGGACTTTGGGATGTGCCTGGGCTTGACGATGAGG
CAGTTGTAATGAAAGCAACCAGGGGGGTTGGTGTCACTCCCCACCAGGTT
TGTAATCGGTTGCAAAAGAAGGCAAAAGTCCAGCAAGGTCCATCCGACGA
TTGCACTATCGCTTGTATGATTGTGATCTAG
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