Ggra351.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra351.t1
Unique NameGgra351.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length611
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:98641..102334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra351Ggra351Gracilaria gracilis GNS1m malegenetig00000950_pilon 98641..102334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra351.t1Ggra351.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 98641..102334 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra351.t1.stop1Ggra351.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 98641..98643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra351.t1.CDS1Ggra351.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 98641..99101 -
Ggra351.t1.CDS2Ggra351.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000950_pilon 99474..100061 -
Ggra351.t1.CDS3Ggra351.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000950_pilon 100878..101376 -
Ggra351.t1.CDS4Ggra351.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000950_pilon 102050..102334 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra351.t1.exon1Ggra351.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 98641..99101 -
Ggra351.t1.exon2Ggra351.t1.exon2Gracilaria gracilis GNS1m maleexontig00000950_pilon 99474..100061 -
Ggra351.t1.exon3Ggra351.t1.exon3Gracilaria gracilis GNS1m maleexontig00000950_pilon 100878..101376 -
Ggra351.t1.exon4Ggra351.t1.exon4Gracilaria gracilis GNS1m maleexontig00000950_pilon 102050..102334 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra351.t1.intron1Ggra351.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000950_pilon 99102..99473 -
Ggra351.t1.intron2Ggra351.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000950_pilon 100062..100877 -
Ggra351.t1.intron3Ggra351.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000950_pilon 101377..102049 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra351.t1.start1Ggra351.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 102332..102334 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra351.t1 ID=Ggra351.t1|Name=Ggra351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=611bp
MQSIVTFSELLSVVERLEITVNKFFQRRDIAHENVQTLRRLERKYNDAIN
LCRELEAVSDTDQLTDVTLKHYHATFEDNCETLHKLHADVDHATMVKESH
CELSRRMLMRHAGFDGADDLEGGNQEAFEAILDMCQGLPLAFGIAGGSVL
TNTYKKREGERQNAWSDFYRDLLDNRTDLYEVKASPYGALPKIVETSLQV
LEKEDPDVKFDEKFRALSVVEKKQEVPLSMLQRLWGLEKRDEAEKVVEML
FDVSVVQIRREVPDIPLGKREMGVTSYNLTSGVQKNRYLSMQGDENEWAL
TLGAFSSDDQLLVTAHANRKGVLWDSRTGEVLKITDLSSLRYGHSLAFSA
VAKRALYGYGKAVSGDGTRFFSQSEDGTIRVRNAFNGDVVRTSPVGYTGV
VRWAAMNENGTRAAYWSEEDMKVRVWNVQSGEVMVTEAQEWVNSLALSAD
GTRMLAAVSSSFHHSRLDGRVRVWDVRSGEEVSAPFEHEKPVLQVGVDAH
GLQVVTYEAEEVSGEEYAPRAATVVRRVWDVALGECVMTSTTNGDSTSDD
AALLWSNRYEAVIEQFDKSGRVTDGTNASDVVLATAEHGVFRVGDMYFSE
KGFSSCKVLR*
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spliced messenger RNA

>Ggra351.t1 ID=Ggra351.t1|Name=Ggra351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1833bp|location=Sequence derived from alignment at tig00000950_pilon:98641..102334- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCCATTGTGACCTTTTCAGAGCTTCTCTCTGTTGTTGAGAGGCT
CGAGATTACGGTGAACAAGTTCTTCCAGCGCCGAGACATTGCTCACGAAA
ACGTCCAAACTCTGCGACGATTAGAGCGCAAATACAATGACGCTATTAAT
CTGTGTCGAGAGCTGGAAGCTGTTTCGGATACCGATCAACTCACGGACGT
TACATTGAAGCACTATCACGCCACTTTTGAAGACAACTGCGAAACTCTGC
ATAAACTCCATGCCGATGTAGACCATGCTACCATGGTGAAAGAAAGTCAT
TGTGAGCTCTCACGACGAATGTTGATGAGGCATGCTGGGTTTGATGGAGC
GGATGATCTTGAGGGGGGAAACCAAGAGGCGTTCGAGGCTATTCTTGATA
TGTGTCAGGGGCTCCCGCTTGCATTTGGCATTGCTGGAGGTTCAGTGTTG
ACGAATACGTACAAGAAGCGGGAGGGTGAGCGACAGAACGCGTGGTCAGA
CTTCTACAGGGATCTACTGGACAACCGAACGGATTTATATGAGGTTAAAG
CTTCACCCTATGGTGCCCTGCCTAAGATAGTGGAAACGTCCCTTCAAGTA
TTGGAGAAGGAGGACCCAGATGTGAAGTTTGATGAAAAGTTTCGAGCGCT
GAGTGTCGTTGAAAAGAAGCAAGAGGTTCCGCTTTCCATGTTACAAAGGT
TATGGGGTTTGGAGAAACGGGATGAAGCGGAGAAGGTTGTCGAAATGCTG
TTTGATGTTTCAGTAGTACAAATACGGCGAGAGGTTCCGGATATCCCTTT
AGGTAAGCGGGAGATGGGGGTGACAAGCTACAATCTTACGAGTGGCGTTC
AGAAGAATAGATATCTAAGCATGCAGGGGGATGAGAACGAATGGGCTTTA
ACACTAGGTGCGTTCTCAAGTGATGATCAGCTGCTGGTTACAGCACACGC
CAACAGAAAAGGTGTGTTGTGGGACTCTAGGACAGGTGAGGTGTTAAAGA
TAACCGACCTTTCCTCACTTCGCTATGGACACTCTCTGGCATTCAGTGCT
GTCGCGAAGCGGGCGCTCTATGGATATGGTAAGGCAGTAAGCGGAGATGG
GACTCGATTTTTCAGTCAGTCCGAAGACGGGACCATTCGAGTGCGGAACG
CGTTCAACGGAGATGTGGTTCGCACGTCCCCTGTCGGTTATACGGGTGTG
GTGCGATGGGCGGCGATGAACGAGAACGGGACTCGAGCAGCATATTGGTC
GGAGGAGGATATGAAAGTTCGAGTTTGGAACGTTCAGAGTGGAGAGGTGA
TGGTGACCGAGGCTCAGGAATGGGTGAACAGTCTGGCGCTGAGTGCGGAC
GGGACGCGAATGTTGGCTGCGGTGTCTTCGTCGTTTCACCACTCACGGCT
TGACGGAAGAGTTCGAGTATGGGACGTGCGCAGCGGGGAAGAGGTCAGCG
CACCATTCGAACACGAAAAGCCAGTGTTGCAGGTTGGGGTAGATGCGCAC
GGTTTGCAAGTGGTGACATATGAGGCGGAAGAGGTGTCTGGGGAGGAGTA
TGCACCCAGAGCAGCCACCGTTGTCCGTAGGGTGTGGGACGTGGCTCTTG
GAGAGTGTGTGATGACTTCGACAACAAATGGAGATTCGACCTCTGACGAC
GCTGCGCTTCTGTGGTCGAACCGGTACGAAGCGGTGATCGAGCAATTCGA
CAAGAGTGGCCGCGTCACAGACGGCACAAACGCGAGCGACGTTGTGCTCG
CCACTGCCGAGCACGGTGTGTTTCGCGTGGGCGACATGTACTTTTCTGAG
AAAGGGTTCTCAAGTTGTAAAGTATTGCGTTGA
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protein sequence of Ggra351.t1

>Ggra351.t1 ID=Ggra351.t1|Name=Ggra351.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=611bp
MQSIVTFSELLSVVERLEITVNKFFQRRDIAHENVQTLRRLERKYNDAIN
LCRELEAVSDTDQLTDVTLKHYHATFEDNCETLHKLHADVDHATMVKESH
CELSRRMLMRHAGFDGADDLEGGNQEAFEAILDMCQGLPLAFGIAGGSVL
TNTYKKREGERQNAWSDFYRDLLDNRTDLYEVKASPYGALPKIVETSLQV
LEKEDPDVKFDEKFRALSVVEKKQEVPLSMLQRLWGLEKRDEAEKVVEML
FDVSVVQIRREVPDIPLGKREMGVTSYNLTSGVQKNRYLSMQGDENEWAL
TLGAFSSDDQLLVTAHANRKGVLWDSRTGEVLKITDLSSLRYGHSLAFSA
VAKRALYGYGKAVSGDGTRFFSQSEDGTIRVRNAFNGDVVRTSPVGYTGV
VRWAAMNENGTRAAYWSEEDMKVRVWNVQSGEVMVTEAQEWVNSLALSAD
GTRMLAAVSSSFHHSRLDGRVRVWDVRSGEEVSAPFEHEKPVLQVGVDAH
GLQVVTYEAEEVSGEEYAPRAATVVRRVWDVALGECVMTSTTNGDSTSDD
AALLWSNRYEAVIEQFDKSGRVTDGTNASDVVLATAEHGVFRVGDMYFSE
KGFSSCKVLR*
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mRNA from alignment at tig00000950_pilon:98641..102334-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra351.t1 ID=Ggra351.t1|Name=Ggra351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3694bp|location=Sequence derived from alignment at tig00000950_pilon:98641..102334- (Gracilaria gracilis GNS1m male)
ATGCAGTCCATTGTGACCTTTTCAGAGCTTCTCTCTGTTGTTGAGAGGCT
CGAGATTACGGTGAACAAGTTCTTCCAGCGCCGAGACATTGCTCACGAAA
ACGTCCAAACTCTGCGACGATTAGAGCGCAAATACAATGACGCTATTAAT
CTGTGTCGAGAGCTGGAAGCTGTTTCGGATACCGATCAACTCACGGACGT
TACATTGAAGCACTATCACGCCACTTTTGAAGACAACTGCGAAACTCTGC
ATAAACTCCATGCCGATGTAGACCATGCTACCATGGTGAGACGCGTGAGG
CGCATGAAGCAAGTTCTGGAGCAGTGTGAAACGGATGTTGAACAGTTCTT
TGAGTTCCTGAACAACAATGTCGCCCCAACTCTCAGGGAAGAATCCAGTG
TACAATTAGAAGGATACTGCGCTGATATTAATGTTCCAAGCAATCCGCCA
CGACTCACGCTAGATTACAGCACGACGTTGACGTGCGAAGGGAAACTAAT
GGAAGCAATTGTGAGTAATAGCGACGGGCGAATCGTTGCTGTGGCGGCGG
TCTGGTCAAGATGGTGTTGGGAAAACATGCGCTCTGCGCGGACTTGCAGT
ACTGCCTGAGGTGGAAGAAAGATTCCCCGGAGGGATACTCTACATTCAAC
TTGGGAACGACAAGAAGCTGTCCGATATCATAGAAGGCATTGCCATCATT
GTTGAGCGTACTGGGGGCTCAACTCTTGCACGGAAAGTGAGAGCGACCAA
GACGCTTAAAGAGGCATCGGACAAAGCATGCAGGTGGTTTAGGCGGCACA
AGTGTCTGTTTCTAATCGATGATATCTGGTGGGTGAATGGCATCGACTCA
GATGTGTTCAGTGTGCTAGGGACAATGGTAAACGAGGACAGTCGTCTGGT
GTACACCACCAATGACAAGCGTTTTCTGAGTGACACTGATATAACTGTAA
TGTTTGAGGTGAAAGAAAGTCATTGTGAGCTCTCACGACGAATGTTGATG
AGGCATGCTGGGTTTGATGGAGCGGATGATCTTGAGGGGGGAAACCAAGA
GGCGTTCGAGGCTATTCTTGATATGTGTCAGGGGCTCCCGCTTGCATTTG
GCATTGCTGGAGGTTCAGTGTTGACGAATACGTACAAGAAGCGGGAGGGT
GAGCGACAGAACGCGTGGTCAGACTTCTACAGGGATCTACTGGACAACCG
AACGGATTTATATGAGGTTAAAGCTTCACCCTATGGTGCCCTGCCTAAGA
TAGTGGAAACGTCCCTTCAAGTATTGGAGAAGGAGGACCCAGATGTGAAG
TTTGATGAAAAGTTTCGAGCGCTGAGTGTCGTTGAAAAGAAGCAAGAGGT
TCCGCTTTCCATGTTACAAAGGTTATGGGGTTTGGAGAAACGGGATGAAG
CGGAGAAGGTTGTCGAAATGCTGTTTGATGTTTCAGTAGTACAAATACGG
CGAGAGGGTAATGTGATTTTGTTACAGCTGCACGATCTAGTGTTAGATAT
CGCGAGACGGAAAGCGGGGGAGAGGGAGGAAGCTAGAGGATTCTTCAAGA
ATCTGGTGGATAACTACACTGGGTATGAGCGTGAAATGAGGAAGGCGTCG
TGCAAGGACATATGCGGGAACGAGGGTGGTGGAAGAGGAAGTAAGGGCAA
GAGATGGGTTGGATTATGGAAGGGAATGAAGCTGCCACGGTTGTGTACGA
GAAATGCTGAAGACCATGAAGTTGGGGAAACTGAAGAGAAAGAAGAGCGC
CAGGTGTGCATGGCATGGTGGGATACGGAGGACGACGGATATATTCTCGA
TAATCTTTGCAGGGTACTTTGGAACGCAGGATACGAAGACGAAATGATGT
GGTTATTGTCAAAGCCGCAATGGATTGTCAAGCGCATGCAGAGTGGTGGG
ATCTACGAGGTGGAACGAGATCTAGAGTGCGGGAAAACAGCTTTGCGTCA
CGCAAGTGTCGATGAACGAGAGCACTTGAAATACATTGACATGGTTGGGA
ACGCGGCGCGGATGAGTTGGACCTATGTGAACGAGAACAGAGGTGAGGCA
TGGTTTCAGCTATACGGACGTTTATTGTGGTACGCAGAGGAATGCGAAAG
ATCTAAGGCATTTGTTGAGGAAATCGAACGTTGTGCACCGAGGCCGTGGG
TGAGAGCTTCGGTTGGATTCTTAGAGCCTGCTGGTAGTGCATTAGAAGAC
GTGATACGATGTCCCGGACCCATTATGTGTCTATCCCAGCATGAAGCTCA
TGTTTACGCTTTGTGGTATACAGTTCCGGATATCCCTTTAGGTAAGCGGG
AGATGGGGGTGACAAGCTACAATCTTACGAGTGGCGTTCAGAAGAATAGA
TATCTAAGCATGCAGGGGGATGAGAACGAATGGGCTTTAACACTAGGTGC
GTTCTCAAGTGATGATCAGCTGCTGGTTACAGCACACGCCAACAGAAAAG
GTGTGTTGTGGGACTCTAGGACAGGTGAGGTGTTAAAGATAACCGACCTT
TCCTCACTTCGCTATGGACACTCTCTGGCATTCAGTGCTGTCGCGAAGCG
GGCGCTCTATGGATATGGTAAGGCAGTAAGCGGAGATGGGACTCGATTTT
TCAGTCAGTCCGAAGACGGGACCATTCGAGTGCGGAACGCGTTCAACGGA
GATGTGGTTCGCACGTCCCCTGTCGGTTATACGGGTGTGGTGCGATGGGC
GGCGATGAACGAGAACGGGACTCGAGCAGCATATTGGTCGGAGGAGGATA
TGAAAGTTCGAGTTTGGAACGTTCAGAGTGGAGAGGTGATGGTGACCGAG
GCTCAGGAATGGGTGAACAGTCTGGCGCTGAGTGCGGACGGGACGCGAAT
GTTGGCTGCGGGTATCCTAACAGTTCGATTCTGGGACGGACTTAGGAGTG
GCGAGGCCGTGGGTGTACTTCTCACGGGTGACAAGTGCAATGTAACATGT
GTGAGTTTGAGCGCGGACGGAAGTCGAGGGTTATCGGGGTCCATCGACGG
TACAGTTCGGATCTGGGCCGGTCTTAGTGGCACGGTAACGGGAGGAATAT
CAGGAGGTGGTGTTAGTGTGACGTGTGTGGCGGTAAGCGCAGACCGGACT
CGAATTGTGACCGGGTCTGACGACGGGAAAGCTCAGGTGTGGGACGCGCT
CAGTGGAGAAGCGGTGGGAAAGCCTTTCCCTCACACGGGTTTGATTGGTT
GTGTGGTCATGAGCGAGGACATGACGCGAATAGTGTCTTCGTCGTTTCAC
CACTCACGGCTTGACGGAAGAGTTCGAGTATGGGACGTGCGCAGCGGGGA
AGAGGTCAGCGCACCATTCGAACACGAAAAGCCAGTGTTGCAGGTTGGGG
TAGATGCGCACGGTTTGCAAGTGGTGACATATGAGGCGGAAGAGGTGTCT
GGGGAGGAGTATGCACCCAGAGCAGCCACCGTTGTCCGTAGGGTGTGGGA
CGTGGCTCTTGGAGAGTGTGTGATGACTTCGACAACAAATGGAGATTCGA
CCTCTGACGACGCTGCGCTTCTGTGGTCGAACCGGTACGAAGCGGTGATC
GAGCAATTCGACAAGAGTGGCCGCGTCACAGACGGCACAAACGCGAGCGA
CGTTGTGCTCGCCACTGCCGAGCACGGTGTGTTTCGCGTGGGCGACATGT
ACTTTTCTGAGAAAGGGTTCTCAAGTTGTAAAGTATTGCGTTGA
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Coding sequence (CDS) from alignment at tig00000950_pilon:98641..102334-

>Ggra351.t1 ID=Ggra351.t1|Name=Ggra351.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1833bp|location=Sequence derived from alignment at tig00000950_pilon:98641..102334- (Gracilaria gracilis GNS1m male)
ATGCAGTCCATTGTGACCTTTTCAGAGCTTCTCTCTGTTGTTGAGAGGCT
CGAGATTACGGTGAACAAGTTCTTCCAGCGCCGAGACATTGCTCACGAAA
ACGTCCAAACTCTGCGACGATTAGAGCGCAAATACAATGACGCTATTAAT
CTGTGTCGAGAGCTGGAAGCTGTTTCGGATACCGATCAACTCACGGACGT
TACATTGAAGCACTATCACGCCACTTTTGAAGACAACTGCGAAACTCTGC
ATAAACTCCATGCCGATGTAGACCATGCTACCATGGTGAAAGAAAGTCAT
TGTGAGCTCTCACGACGAATGTTGATGAGGCATGCTGGGTTTGATGGAGC
GGATGATCTTGAGGGGGGAAACCAAGAGGCGTTCGAGGCTATTCTTGATA
TGTGTCAGGGGCTCCCGCTTGCATTTGGCATTGCTGGAGGTTCAGTGTTG
ACGAATACGTACAAGAAGCGGGAGGGTGAGCGACAGAACGCGTGGTCAGA
CTTCTACAGGGATCTACTGGACAACCGAACGGATTTATATGAGGTTAAAG
CTTCACCCTATGGTGCCCTGCCTAAGATAGTGGAAACGTCCCTTCAAGTA
TTGGAGAAGGAGGACCCAGATGTGAAGTTTGATGAAAAGTTTCGAGCGCT
GAGTGTCGTTGAAAAGAAGCAAGAGGTTCCGCTTTCCATGTTACAAAGGT
TATGGGGTTTGGAGAAACGGGATGAAGCGGAGAAGGTTGTCGAAATGCTG
TTTGATGTTTCAGTAGTACAAATACGGCGAGAGGTTCCGGATATCCCTTT
AGGTAAGCGGGAGATGGGGGTGACAAGCTACAATCTTACGAGTGGCGTTC
AGAAGAATAGATATCTAAGCATGCAGGGGGATGAGAACGAATGGGCTTTA
ACACTAGGTGCGTTCTCAAGTGATGATCAGCTGCTGGTTACAGCACACGC
CAACAGAAAAGGTGTGTTGTGGGACTCTAGGACAGGTGAGGTGTTAAAGA
TAACCGACCTTTCCTCACTTCGCTATGGACACTCTCTGGCATTCAGTGCT
GTCGCGAAGCGGGCGCTCTATGGATATGGTAAGGCAGTAAGCGGAGATGG
GACTCGATTTTTCAGTCAGTCCGAAGACGGGACCATTCGAGTGCGGAACG
CGTTCAACGGAGATGTGGTTCGCACGTCCCCTGTCGGTTATACGGGTGTG
GTGCGATGGGCGGCGATGAACGAGAACGGGACTCGAGCAGCATATTGGTC
GGAGGAGGATATGAAAGTTCGAGTTTGGAACGTTCAGAGTGGAGAGGTGA
TGGTGACCGAGGCTCAGGAATGGGTGAACAGTCTGGCGCTGAGTGCGGAC
GGGACGCGAATGTTGGCTGCGGTGTCTTCGTCGTTTCACCACTCACGGCT
TGACGGAAGAGTTCGAGTATGGGACGTGCGCAGCGGGGAAGAGGTCAGCG
CACCATTCGAACACGAAAAGCCAGTGTTGCAGGTTGGGGTAGATGCGCAC
GGTTTGCAAGTGGTGACATATGAGGCGGAAGAGGTGTCTGGGGAGGAGTA
TGCACCCAGAGCAGCCACCGTTGTCCGTAGGGTGTGGGACGTGGCTCTTG
GAGAGTGTGTGATGACTTCGACAACAAATGGAGATTCGACCTCTGACGAC
GCTGCGCTTCTGTGGTCGAACCGGTACGAAGCGGTGATCGAGCAATTCGA
CAAGAGTGGCCGCGTCACAGACGGCACAAACGCGAGCGACGTTGTGCTCG
CCACTGCCGAGCACGGTGTGTTTCGCGTGGGCGACATGTACTTTTCTGAG
AAAGGGTTCTCAAGTTGTAAAGTATTGCGTTGA
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