Ggra3498.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3498.t1
Unique NameGgra3498.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:551798..552684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709380.1
PFAMsLRR_8
Max annot lvl2759|Eukaryota
KEGG koko:K19613
KEGG Pathwayko04014,map04014
Evalue8.9e-06
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
COG categoryU
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3498Ggra3498Gracilaria gracilis GNS1m malegenetig00000059_pilon 551798..552684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3498.t1Ggra3498.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 551798..552684 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3498.t1.stop1Ggra3498.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 551798..551800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3498.t1.CDS1Ggra3498.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 551798..552371 -
Ggra3498.t1.CDS2Ggra3498.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 552464..552684 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3498.t1.exon1Ggra3498.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 551798..552371 -
Ggra3498.t1.exon2Ggra3498.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 552464..552684 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3498.t1.intron1Ggra3498.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 552372..552463 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3498.t1.start1Ggra3498.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 552682..552684 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3498.t1 ID=Ggra3498.t1|Name=Ggra3498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=265bp
MQVSASLAEFMSKVEEGPQGVDDARAEIHRCASESASTLDLQQMLLTDGD
MKVISKEFEKVAQHVTHLNIFMNDITVLPAAIAKLSNLEVLHAGCNPLQV
IEHELLPGLPKLRELDIGFSETLAEIPDAFHGCHALKVLQAGNGMLKSIP
PSVFRCENLEELHVYGNSIKEISEEIGCLRSLRVLSAGRNQISKLPDSIC
NCGSLEILHVYENCLSTLPSNLFKLDKLKTLNVDFNADLPSPPRSVRCAS
DIQAIAAFHANNTG*
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spliced messenger RNA

>Ggra3498.t1 ID=Ggra3498.t1|Name=Ggra3498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000059_pilon:551798..552684- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTATCTGCGAGCCTAGCCGAATTTATGTCGAAAGTCGAAGAAGG
ACCCCAAGGGGTCGACGATGCACGTGCTGAAATTCATCGATGCGCGAGTG
AGTCTGCTTCAACACTTGACCTTCAGCAGATGCTTCTCACGGATGGAGAT
ATGAAGGTAATATCGAAAGAGTTCGAAAAAGTAGCCCAGCATGTGACTCA
CCTAAACATTTTCATGAACGATATTACAGTTTTACCGGCTGCAATTGCTA
AGCTTTCGAATCTTGAAGTGTTGCACGCTGGGTGTAACCCCCTTCAAGTC
ATCGAACATGAACTACTGCCCGGATTGCCAAAGCTACGCGAATTAGACAT
TGGTTTTAGTGAGACACTTGCGGAAATCCCCGATGCATTTCATGGGTGCC
ATGCCCTTAAAGTTCTACAGGCAGGAAATGGAATGTTGAAATCAATTCCA
CCAAGCGTGTTCCGTTGCGAAAATCTCGAAGAACTTCATGTTTACGGAAA
CAGTATCAAAGAGATTAGCGAGGAGATTGGGTGCTTGCGCTCACTCCGAG
TACTCAGTGCTGGGAGGAACCAAATATCTAAACTTCCGGACTCAATTTGC
AATTGCGGGTCGTTGGAGATACTCCATGTATATGAGAACTGTCTCTCCAC
ACTTCCTTCAAACTTGTTTAAGTTGGACAAGCTAAAGACTTTAAATGTTG
ACTTCAATGCAGATCTACCTTCTCCGCCGAGATCTGTACGTTGCGCTTCG
GACATTCAAGCTATCGCTGCTTTTCATGCAAACAACACGGGTTAG
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protein sequence of Ggra3498.t1

>Ggra3498.t1 ID=Ggra3498.t1|Name=Ggra3498.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MQVSASLAEFMSKVEEGPQGVDDARAEIHRCASESASTLDLQQMLLTDGD
MKVISKEFEKVAQHVTHLNIFMNDITVLPAAIAKLSNLEVLHAGCNPLQV
IEHELLPGLPKLRELDIGFSETLAEIPDAFHGCHALKVLQAGNGMLKSIP
PSVFRCENLEELHVYGNSIKEISEEIGCLRSLRVLSAGRNQISKLPDSIC
NCGSLEILHVYENCLSTLPSNLFKLDKLKTLNVDFNADLPSPPRSVRCAS
DIQAIAAFHANNTG*
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mRNA from alignment at tig00000059_pilon:551798..552684-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3498.t1 ID=Ggra3498.t1|Name=Ggra3498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=887bp|location=Sequence derived from alignment at tig00000059_pilon:551798..552684- (Gracilaria gracilis GNS1m male)
ATGCAAGTATCTGCGAGCCTAGCCGAATTTATGTCGAAAGTCGAAGAAGG
ACCCCAAGGGGTCGACGATGCACGTGCTGAAATTCATCGATGCGCGAGTG
AGTCTGCTTCAACACTTGACCTTCAGCAGATGCTTCTCACGGATGGAGAT
ATGAAGGTAATATCGAAAGAGTTCGAAAAAGTAGCCCAGCATGTGACTCA
CCTAAACATTTTCATGAACGAGTAAGTTAAAGCCATTAGAAAGACATTTT
CGGGTGAACAGATGAAACTAACACCAAGTCCGTCATGTTTTTTTGTATGG
AACAACTGTGCAGTATTACAGTTTTACCGGCTGCAATTGCTAAGCTTTCG
AATCTTGAAGTGTTGCACGCTGGGTGTAACCCCCTTCAAGTCATCGAACA
TGAACTACTGCCCGGATTGCCAAAGCTACGCGAATTAGACATTGGTTTTA
GTGAGACACTTGCGGAAATCCCCGATGCATTTCATGGGTGCCATGCCCTT
AAAGTTCTACAGGCAGGAAATGGAATGTTGAAATCAATTCCACCAAGCGT
GTTCCGTTGCGAAAATCTCGAAGAACTTCATGTTTACGGAAACAGTATCA
AAGAGATTAGCGAGGAGATTGGGTGCTTGCGCTCACTCCGAGTACTCAGT
GCTGGGAGGAACCAAATATCTAAACTTCCGGACTCAATTTGCAATTGCGG
GTCGTTGGAGATACTCCATGTATATGAGAACTGTCTCTCCACACTTCCTT
CAAACTTGTTTAAGTTGGACAAGCTAAAGACTTTAAATGTTGACTTCAAT
GCAGATCTACCTTCTCCGCCGAGATCTGTACGTTGCGCTTCGGACATTCA
AGCTATCGCTGCTTTTCATGCAAACAACACGGGTTAG
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Coding sequence (CDS) from alignment at tig00000059_pilon:551798..552684-

>Ggra3498.t1 ID=Ggra3498.t1|Name=Ggra3498.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000059_pilon:551798..552684- (Gracilaria gracilis GNS1m male)
ATGCAAGTATCTGCGAGCCTAGCCGAATTTATGTCGAAAGTCGAAGAAGG
ACCCCAAGGGGTCGACGATGCACGTGCTGAAATTCATCGATGCGCGAGTG
AGTCTGCTTCAACACTTGACCTTCAGCAGATGCTTCTCACGGATGGAGAT
ATGAAGGTAATATCGAAAGAGTTCGAAAAAGTAGCCCAGCATGTGACTCA
CCTAAACATTTTCATGAACGATATTACAGTTTTACCGGCTGCAATTGCTA
AGCTTTCGAATCTTGAAGTGTTGCACGCTGGGTGTAACCCCCTTCAAGTC
ATCGAACATGAACTACTGCCCGGATTGCCAAAGCTACGCGAATTAGACAT
TGGTTTTAGTGAGACACTTGCGGAAATCCCCGATGCATTTCATGGGTGCC
ATGCCCTTAAAGTTCTACAGGCAGGAAATGGAATGTTGAAATCAATTCCA
CCAAGCGTGTTCCGTTGCGAAAATCTCGAAGAACTTCATGTTTACGGAAA
CAGTATCAAAGAGATTAGCGAGGAGATTGGGTGCTTGCGCTCACTCCGAG
TACTCAGTGCTGGGAGGAACCAAATATCTAAACTTCCGGACTCAATTTGC
AATTGCGGGTCGTTGGAGATACTCCATGTATATGAGAACTGTCTCTCCAC
ACTTCCTTCAAACTTGTTTAAGTTGGACAAGCTAAAGACTTTAAATGTTG
ACTTCAATGCAGATCTACCTTCTCCGCCGAGATCTGTACGTTGCGCTTCG
GACATTCAAGCTATCGCTGCTTTTCATGCAAACAACACGGGTTAG
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