Ggra3497.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3497.t1
Unique Name	Ggra3497.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	255

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:550634..551398 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	349520.PPE_00565
Preferred name	M1-742
PFAMs	His_Phos_1
Max annot lvl	91061\|Bacilli
Evalue	7.09e-70
EggNOG OGs	COG0406@1\|root,COG0406@2\|Bacteria,1U7UE@1239\|Firmicutes,4I7R7@91061\|Bacilli,26X7Z@186822\|Paenibacillaceae
Description	Phosphoglycerate mutase family
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3497	Ggra3497	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 550634..551398 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3497.t1.start1	Ggra3497.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 550634..550636 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3497.t1.CDS1	Ggra3497.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 550634..551398 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3497.t1.exon1	Ggra3497.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 550634..551398 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3497.t1.stop1	Ggra3497.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 551396..551398 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3497.t1	Ggra3497.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 550634..551398 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:550634..551398+
coding sequence from alignment at tig00000059_pilon:550634..551398+

mRNA sequence

>Ggra3497.t1 ID=Ggra3497.t1|Name=Ggra3497.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=255bp
MRILIIRHADPEYVNDTITPDGRKEALALAERLSSGLEGKVTHLYTSPKG
RARATAAPTEEILEMTATTEHWTRELSYWPRLRGGDRPGEGGLAMWDIPA
TQVRASEDLGSISQWDTVNELKSIKSNYENLQTESDAFIARHGYVREGHH
YRIVNANRDIIAVFCHGGFGLTWLSHLLGLPLAMAWTSFYLPPSSVTTIL
FDERSPDFAYPRAIGVGDIGHLYSNSLALSVSKYERPNVYGKWKRPSGIK
ANFW*

spliced messenger RNA

>Ggra3497.t1 ID=Ggra3497.t1|Name=Ggra3497.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000059_pilon:550634..551398+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTATTCTCATCATTCGACACGCTGACCCGGAATATGTCAATGACAC
AATAACACCTGACGGGAGAAAGGAGGCCTTAGCGCTTGCAGAGCGTCTTT
CCAGCGGTCTCGAAGGAAAAGTAACCCACTTGTATACAAGTCCAAAAGGT
CGAGCAAGGGCCACAGCTGCTCCAACGGAAGAAATTCTTGAGATGACTGC
CACCACAGAACACTGGACCAGGGAGCTCTCATATTGGCCTCGGCTTCGAG
GTGGTGACCGTCCGGGAGAGGGCGGGCTTGCCATGTGGGACATCCCTGCG
ACTCAAGTTCGAGCATCAGAAGACCTAGGATCAATATCGCAGTGGGACAC
CGTTAATGAACTGAAGTCTATTAAGTCTAACTACGAGAATTTGCAGACAG
AGAGCGATGCATTCATCGCTcgtcacggctacgtccgagaaggccatcac
tatcgcatcgtcaatgcgaatcgtgacattatcgctgtattctgccatgg
cgggtttgggctaacatggctttcccaTTTGCTCGGTCTCCCTCTTGCCA
TGGCATGGACTTCGTTTTATCTTCCACCTAGCTCGGTTACGACAATTTTA
TTCGATGAACGTAGTCCTGATTTTGCATACCCCCGAGCTATTGGAGTTGG
GGATATCGGCCATTTGTATTCTAATAGTCTTGCTCTGTCGGTAAGCAAAT
ACGAACGTCCTAATGTATACGGGAAATGGAAGAGACCAAGTGGCATCAAA
GCCAACTTCTGGTAA

protein sequence of Ggra3497.t1

>Ggra3497.t1 ID=Ggra3497.t1|Name=Ggra3497.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=255bp
MRILIIRHADPEYVNDTITPDGRKEALALAERLSSGLEGKVTHLYTSPKG
RARATAAPTEEILEMTATTEHWTRELSYWPRLRGGDRPGEGGLAMWDIPA
TQVRASEDLGSISQWDTVNELKSIKSNYENLQTESDAFIARHGYVREGHH
YRIVNANRDIIAVFCHGGFGLTWLSHLLGLPLAMAWTSFYLPPSSVTTIL
FDERSPDFAYPRAIGVGDIGHLYSNSLALSVSKYERPNVYGKWKRPSGIK
ANFW*

mRNA from alignment at tig00000059_pilon:550634..551398+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3497.t1 ID=Ggra3497.t1|Name=Ggra3497.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000059_pilon:550634..551398+ (Gracilaria gracilis GNS1m male)
ATGCGTATTCTCATCATTCGACACGCTGACCCGGAATATGTCAATGACAC
AATAACACCTGACGGGAGAAAGGAGGCCTTAGCGCTTGCAGAGCGTCTTT
CCAGCGGTCTCGAAGGAAAAGTAACCCACTTGTATACAAGTCCAAAAGGT
CGAGCAAGGGCCACAGCTGCTCCAACGGAAGAAATTCTTGAGATGACTGC
CACCACAGAACACTGGACCAGGGAGCTCTCATATTGGCCTCGGCTTCGAG
GTGGTGACCGTCCGGGAGAGGGCGGGCTTGCCATGTGGGACATCCCTGCG
ACTCAAGTTCGAGCATCAGAAGACCTAGGATCAATATCGCAGTGGGACAC
CGTTAATGAACTGAAGTCTATTAAGTCTAACTACGAGAATTTGCAGACAG
AGAGCGATGCATTCATCGCTcgtcacggctacgtccgagaaggccatcac
tatcgcatcgtcaatgcgaatcgtgacattatcgctgtattctgccatgg
cgggtttgggctaacatggctttcccaTTTGCTCGGTCTCCCTCTTGCCA
TGGCATGGACTTCGTTTTATCTTCCACCTAGCTCGGTTACGACAATTTTA
TTCGATGAACGTAGTCCTGATTTTGCATACCCCCGAGCTATTGGAGTTGG
GGATATCGGCCATTTGTATTCTAATAGTCTTGCTCTGTCGGTAAGCAAAT
ACGAACGTCCTAATGTATACGGGAAATGGAAGAGACCAAGTGGCATCAAA
GCCAACTTCTGGTAA

Coding sequence (CDS) from alignment at tig00000059_pilon:550634..551398+

>Ggra3497.t1 ID=Ggra3497.t1|Name=Ggra3497.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00000059_pilon:550634..551398+ (Gracilaria gracilis GNS1m male)
ATGCGTATTCTCATCATTCGACACGCTGACCCGGAATATGTCAATGACAC
AATAACACCTGACGGGAGAAAGGAGGCCTTAGCGCTTGCAGAGCGTCTTT
CCAGCGGTCTCGAAGGAAAAGTAACCCACTTGTATACAAGTCCAAAAGGT
CGAGCAAGGGCCACAGCTGCTCCAACGGAAGAAATTCTTGAGATGACTGC
CACCACAGAACACTGGACCAGGGAGCTCTCATATTGGCCTCGGCTTCGAG
GTGGTGACCGTCCGGGAGAGGGCGGGCTTGCCATGTGGGACATCCCTGCG
ACTCAAGTTCGAGCATCAGAAGACCTAGGATCAATATCGCAGTGGGACAC
CGTTAATGAACTGAAGTCTATTAAGTCTAACTACGAGAATTTGCAGACAG
AGAGCGATGCATTCATCGCTcgtcacggctacgtccgagaaggccatcac
tatcgcatcgtcaatgcgaatcgtgacattatcgctgtattctgccatgg
cgggtttgggctaacatggctttcccaTTTGCTCGGTCTCCCTCTTGCCA
TGGCATGGACTTCGTTTTATCTTCCACCTAGCTCGGTTACGACAATTTTA
TTCGATGAACGTAGTCCTGATTTTGCATACCCCCGAGCTATTGGAGTTGG
GGATATCGGCCATTTGTATTCTAATAGTCTTGCTCTGTCGGTAAGCAAAT
ACGAACGTCCTAATGTATACGGGAAATGGAAGAGACCAAGTGGCATCAAA
GCCAACTTCTGGTAA