Ggra3495.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3495.t1
Unique NameGgra3495.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:537493..538518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT467CT
Preferred nameSLC35C1
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15279
KEGG TC2.A.7.16
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005342,GO:0005457,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006629,GO:0006810,GO:0006811,GO:0006820,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008593,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0015075,GO:0015318,GO:0015605,GO:0015711,GO:0015714,GO:0015717,GO:0015718,GO:0015748,GO:0015780,GO:0015783,GO:0015849,GO:0015931,GO:0015932,GO:0016020,GO:0022857,GO:0023051,GO:0023057,GO:0030258,GO:0030259,GO:0031090,GO:0031984,GO:0034220,GO:0035436,GO:0036080,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045746,GO:0046942,GO:0046943,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071917,GO:0089721,GO:0089722,GO:0090480,GO:0098588,GO:0098656,GO:0098791,GO:1901264,GO:1901505,GO:1903825,GO:1905039,GO:1990536
Evalue1.38e-129
EggNOG OGsKOG1442@1|root,KOG1442@2759|Eukaryota
DescriptionGDP-fucose import into Golgi lumen
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3495Ggra3495Gracilaria gracilis GNS1m malegenetig00000059_pilon 537493..538518 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3495.t1.stop1Ggra3495.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 537493..537495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3495.t1.CDS1Ggra3495.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 537493..538518 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3495.t1.exon1Ggra3495.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 537493..538518 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3495.t1.start1Ggra3495.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 538516..538518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3495.t1Ggra3495.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 537493..538518 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3495.t1 ID=Ggra3495.t1|Name=Ggra3495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MAKNAASAAMHAVFFAVAFYWFISITMVFVNKALLSDPEGKLDAPLFITW
FQCVVTVLGCYVMGELGVARVPKFELKRDILKQMLPLSCVFTMMMVCNNL
CLKYVEISFYQVARSLTIVFNVVFDFIILGQRTSLPAMLCCALVVSGFLV
GNQNEMRWSFQGVLFGVAASFFVAMNAIYVKKKFPVVDNNPWKLTLYNNM
NAAIIFIPLILSSGEPQLILVSENILKLKFWLMMIAGGVFGICISFAVAA
QIKYTSPLTHNVSATAKAAAQTVLGLIVYRNPINIWGAASVAVILAGSLF
YTLVRRAEMKKKLAAQEAQTSKVSEDIRPLIAEGDEAKDTK*
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spliced messenger RNA

>Ggra3495.t1 ID=Ggra3495.t1|Name=Ggra3495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000059_pilon:537493..538518- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAAAACGCCGCATCGGCTGCGATGCATGCCGTCTTCTTTGCAGT
AGCCTTTTACTGGTTTATCAGCATCACCATGGTTTTTGTCAACAAAGCTC
TTTTGTCGGATCCCGAAGGCAAGCTTGACGCTCCATTATTTATCACATGG
TTTCAGTGCGTCGTAACTGTACTGGGATGCTACGTTATGGGCGAATTGGG
AGTGGCCAGGGTACCAAAGTTTGAACTGAAGAGGGATATTCTGAAGCAGA
TGCTTCCGCTGTCATGCGTGTTTACCATGATGATGGTGTGCAACAATCTT
TGTCTCAAATACGTTGAGATATCCTTCTATCAGGTTGCTCGTTCTCTTAC
TATTGTTTTCAACGTTGTCTTCGACTTCATCATTCTTGGCCAACGTACGT
CTCTCCCGGCAATGCTTTGCTGTGCATTAGTTGTATCAGGTTTTCTTGTT
GGCAATCAGAACGAAATGCGATGGTCCTTTCAAGGCGTCCTCTTCGGTGT
TGCCGCTAGTTTCTTCGTTGCCATGAACGCCATCTACGTCAAGAAAAAGT
TTCCGGTCGTTGATAATAATCCATGGAAACTCACCTTGTACAATAACATG
AACGCAGCCATCATCTTCATTCCGCTCATACTCTCTTCCGGCGAGCCGCA
ACTGATCTTGGTGTCAGAAAACATCCTCAAACTCAAGTTTTGGCTGATGA
TGATCGCCGGAGGTGTCTTTGGTATTTGCATATCTTTCGCAGTTGCCGCA
CAGATCAAGTACACGTCACCACTAACGCACAATGTTTCTGCAACCGCCAA
GGCTGCAGCGCAGACAGTTTTGGGACTCATTGTATATCGGAATCCAATTA
ACATTTGGGGCGCTGCAAGCGTCGCAGTAATTTTGGCCGGCTCTCTGTTC
TATACGTTAGTTCGAAGAGCAGAAATGAAGAAGAAGCTGGCAGCTCAAGA
AGCTCAAACATCTAAGGTTTCTGAGGACATCAGGCCGTTAATTGCAGAAG
GAGACGAGGCTAAGGACACCAAGTAG
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protein sequence of Ggra3495.t1

>Ggra3495.t1 ID=Ggra3495.t1|Name=Ggra3495.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MAKNAASAAMHAVFFAVAFYWFISITMVFVNKALLSDPEGKLDAPLFITW
FQCVVTVLGCYVMGELGVARVPKFELKRDILKQMLPLSCVFTMMMVCNNL
CLKYVEISFYQVARSLTIVFNVVFDFIILGQRTSLPAMLCCALVVSGFLV
GNQNEMRWSFQGVLFGVAASFFVAMNAIYVKKKFPVVDNNPWKLTLYNNM
NAAIIFIPLILSSGEPQLILVSENILKLKFWLMMIAGGVFGICISFAVAA
QIKYTSPLTHNVSATAKAAAQTVLGLIVYRNPINIWGAASVAVILAGSLF
YTLVRRAEMKKKLAAQEAQTSKVSEDIRPLIAEGDEAKDTK*
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mRNA from alignment at tig00000059_pilon:537493..538518-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3495.t1 ID=Ggra3495.t1|Name=Ggra3495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000059_pilon:537493..538518- (Gracilaria gracilis GNS1m male)
ATGGCGAAAAACGCCGCATCGGCTGCGATGCATGCCGTCTTCTTTGCAGT
AGCCTTTTACTGGTTTATCAGCATCACCATGGTTTTTGTCAACAAAGCTC
TTTTGTCGGATCCCGAAGGCAAGCTTGACGCTCCATTATTTATCACATGG
TTTCAGTGCGTCGTAACTGTACTGGGATGCTACGTTATGGGCGAATTGGG
AGTGGCCAGGGTACCAAAGTTTGAACTGAAGAGGGATATTCTGAAGCAGA
TGCTTCCGCTGTCATGCGTGTTTACCATGATGATGGTGTGCAACAATCTT
TGTCTCAAATACGTTGAGATATCCTTCTATCAGGTTGCTCGTTCTCTTAC
TATTGTTTTCAACGTTGTCTTCGACTTCATCATTCTTGGCCAACGTACGT
CTCTCCCGGCAATGCTTTGCTGTGCATTAGTTGTATCAGGTTTTCTTGTT
GGCAATCAGAACGAAATGCGATGGTCCTTTCAAGGCGTCCTCTTCGGTGT
TGCCGCTAGTTTCTTCGTTGCCATGAACGCCATCTACGTCAAGAAAAAGT
TTCCGGTCGTTGATAATAATCCATGGAAACTCACCTTGTACAATAACATG
AACGCAGCCATCATCTTCATTCCGCTCATACTCTCTTCCGGCGAGCCGCA
ACTGATCTTGGTGTCAGAAAACATCCTCAAACTCAAGTTTTGGCTGATGA
TGATCGCCGGAGGTGTCTTTGGTATTTGCATATCTTTCGCAGTTGCCGCA
CAGATCAAGTACACGTCACCACTAACGCACAATGTTTCTGCAACCGCCAA
GGCTGCAGCGCAGACAGTTTTGGGACTCATTGTATATCGGAATCCAATTA
ACATTTGGGGCGCTGCAAGCGTCGCAGTAATTTTGGCCGGCTCTCTGTTC
TATACGTTAGTTCGAAGAGCAGAAATGAAGAAGAAGCTGGCAGCTCAAGA
AGCTCAAACATCTAAGGTTTCTGAGGACATCAGGCCGTTAATTGCAGAAG
GAGACGAGGCTAAGGACACCAAGTAG
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Coding sequence (CDS) from alignment at tig00000059_pilon:537493..538518-

>Ggra3495.t1 ID=Ggra3495.t1|Name=Ggra3495.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000059_pilon:537493..538518- (Gracilaria gracilis GNS1m male)
ATGGCGAAAAACGCCGCATCGGCTGCGATGCATGCCGTCTTCTTTGCAGT
AGCCTTTTACTGGTTTATCAGCATCACCATGGTTTTTGTCAACAAAGCTC
TTTTGTCGGATCCCGAAGGCAAGCTTGACGCTCCATTATTTATCACATGG
TTTCAGTGCGTCGTAACTGTACTGGGATGCTACGTTATGGGCGAATTGGG
AGTGGCCAGGGTACCAAAGTTTGAACTGAAGAGGGATATTCTGAAGCAGA
TGCTTCCGCTGTCATGCGTGTTTACCATGATGATGGTGTGCAACAATCTT
TGTCTCAAATACGTTGAGATATCCTTCTATCAGGTTGCTCGTTCTCTTAC
TATTGTTTTCAACGTTGTCTTCGACTTCATCATTCTTGGCCAACGTACGT
CTCTCCCGGCAATGCTTTGCTGTGCATTAGTTGTATCAGGTTTTCTTGTT
GGCAATCAGAACGAAATGCGATGGTCCTTTCAAGGCGTCCTCTTCGGTGT
TGCCGCTAGTTTCTTCGTTGCCATGAACGCCATCTACGTCAAGAAAAAGT
TTCCGGTCGTTGATAATAATCCATGGAAACTCACCTTGTACAATAACATG
AACGCAGCCATCATCTTCATTCCGCTCATACTCTCTTCCGGCGAGCCGCA
ACTGATCTTGGTGTCAGAAAACATCCTCAAACTCAAGTTTTGGCTGATGA
TGATCGCCGGAGGTGTCTTTGGTATTTGCATATCTTTCGCAGTTGCCGCA
CAGATCAAGTACACGTCACCACTAACGCACAATGTTTCTGCAACCGCCAA
GGCTGCAGCGCAGACAGTTTTGGGACTCATTGTATATCGGAATCCAATTA
ACATTTGGGGCGCTGCAAGCGTCGCAGTAATTTTGGCCGGCTCTCTGTTC
TATACGTTAGTTCGAAGAGCAGAAATGAAGAAGAAGCTGGCAGCTCAAGA
AGCTCAAACATCTAAGGTTTCTGAGGACATCAGGCCGTTAATTGCAGAAG
GAGACGAGGCTAAGGACACCAAGTAG
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