Ggra3494.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3494.t1
Unique Name	Ggra3494.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	649

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:534829..536775 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMF090CT
Preferred name	CHO2
PFAMs	PEMT
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC00060
KEGG ko	ko:K16369
KEGG Reaction	R02056
KEGG Pathway	ko00564,ko01100,ko01110,map00564,map01100,map01110
KEGG Module	M00091
GOs	GO:0003674,GO:0003824,GO:0004608,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006629,GO:0006644,GO:0006650,GO:0006656,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008610,GO:0008654,GO:0008757,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016741,GO:0019637,GO:0031224,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045017,GO:0046470,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:0097164,GO:1901564,GO:1901566,GO:1901576
Evalue	4.55e-91
EggNOG OGs	28J4G@1\|root,2QRGH@2759\|Eukaryota
EC	2.1.1.17
Description	phosphatidylethanolamine N-methyltransferase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3494	Ggra3494	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 534829..536775 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3494.t1.start1	Ggra3494.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 534829..534831 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3494.t1.CDS1	Ggra3494.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 534829..536775 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3494.t1.exon1	Ggra3494.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 534829..536775 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3494.t1.stop1	Ggra3494.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 536773..536775 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3494.t1	Ggra3494.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 534829..536775 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:534829..536775+
coding sequence from alignment at tig00000059_pilon:534829..536775+

mRNA sequence

>Ggra3494.t1 ID=Ggra3494.t1|Name=Ggra3494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=649bp
MSPSTRKGRTTTGFVFELPATTDMFQTLASPTRWGPAEYLTILLVLSQVC
TVPVMWLLPRLYFILVFAFWRLAYNVGIGALLHVQSKRAVITAWLHALSP
SARALVHWASTKSMRNDYSWEKLPSCYNAWIAFRALSMIILTNDGLSYSL
LAFNCFNPLHTSPLWKLLICIPTGVALIVLSFWSKGAAHHVLGDFAWYWG
DFFFTVDADLKFDGVFELFPHPMYTVGYAAYYGAALICRSHTLLAISLLA
HMSQLLFLALVEEPHIQKIYGPSSPTPAAEQSTADHQPVTPDRSSSSTLT
ASYDEFLHAAPRLPVIASLVVAFSAVAALAISSRPSTAKAVLLLLSWCLA
HWTLLFYALHPTGDADQNYWMRLFMSRGYLNFHAFSAWQHTYLASFVAKH
ALFLIAASSFDPSKAPNSGSVSETISGVLAGFSLTAIAVVSLASTWNDIG
YFGFFYGDFFVAPKEQKLRTSGMFRYVTHPEATLGYLAYYGIAFIKQSRA
LFLLALVCQSLHLMFVVTNESKHIERTYSTRKDFTALEKAMVTLPIISTV
YGLMHDLLSQFSHYVDTVGKTQAKQTVRKLSVRKERLKADLNKSIANARD
KHMKPRTEELRSRAKSVVGDLDCASIVSMLGNRGIRVEPVSQSPVGGE*

spliced messenger RNA

>Ggra3494.t1 ID=Ggra3494.t1|Name=Ggra3494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1947bp|location=Sequence derived from alignment at tig00000059_pilon:534829..536775+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCCGTCTACCAGAAAAGGCCGTACCACTACCGGCTTCGTGTTCGA
GCTGCCTGCCACCACCGATATGTTTCAAACCTTGGCTTCGCCTACCAGGT
GGGGCCCGGCAGAGTATCTCACCATACTCCTCGTCCTATCGCAAGTGTGC
ACCGTTCCCGTCATGTGGCTGCTACCGCGTTTGTATTTCATCCTCGTGTT
CGCGTTTTGGAGACTTGCGTATAACGTTGGCATTGGTGCCTTACTTCACG
TTCAATCAAAACGCGCCGTTATAACCGCATGGCTTCACGCACTCTCTCCC
TCTGCCCGTGCGCTCGTACATTGGGCGAGCACCAAGTCTATGCGCAACGA
TTATTCATGGGAGAAGCTTCCGTCCTGTTACAATGCATGGATTGCCTTTC
GCGCTCTCTCGATGATCATTCTCACCAACGATGGTCTGTCGTACTCCTTG
CTTGCCTTCAACTGTTTCAATCCGCTCCACACCTCTCCGCTCTGGAAGCT
GCTCATCTGTATTCCCACTGGCGTTGCTCTCATCGTTCTTTCGTTTTGGT
CAAAGGGCGCTGCCCATCATGTTCTGGGTGACTTCGCCTGGTATTGGGGC
GATTTCTTCTTCACAGTTGATGCTGATCTTAAGTTTGATGGTGTCTTTGA
ACTGTTTCCACACCCTATGTATACTGTCGGCTATGCCGCTTACTACGGAG
CTGCACTTATATGCCGTTCTCACACGCTTCTTGCTATATCTTTGCTGGCT
CACATGTCGCAACTTTTGTTCCTAGCCCTTGTCGAAGAGCCTCATATACA
GAAGATATATGGTCCGAGCTCGCCCACTCCTGCGGCGGAACAGTCAACTG
CTGATCATCAACCAGTTACACCAGATCGCTCCTCTTCATCGACTTTGACT
GCGTCGTACGATGAATTTTTGCACGCTGCCCCTCGTTTACCGGTGATCGC
CTCACTTGTAGTTGCCTTCAGCGCTGTGGCGGCGTTGGCAATCTCTTCAC
GCCCGTCCACGGCCAAGGCCGTGCTTTTGTTACTCTCTTGGTGCCTGGCT
CATTGGACCCTTCTATTTTATGCCTTGCACCCCACCGGCGATGCTGATCA
AAACTACTGGATGCGACTGTTCATGTCGAGGGGGTATTTAAACTTCCATG
CATTCTCTGCGTGGCAACACACTTACCTAGCCTCCTTTGTGGCCAAGCAC
GCCTTGTTTTTGATTGCTGCGTCTTCGTTTGATCCTTCCAAGGCTCCAAA
TAGTGGTTCTGTGTCAGAGACAATATCTGGAGTTCTTGCCGGATTCTCTC
TTACGGCTATCGCCGTAGTTAGTTTGGCGTCAACCTGGAACGACATTGGT
TACTTTGGGTTCTTTTATGGCGATTTCTTTGTTGCGCCAAAAGAGCAGAA
GCTGCGAACGTCTGGAATGTTTCGCTATGTCACTCACCCGGAGGCCACTT
TGGGGTATTTGGCATACTATGGAATTGCTTTCATCAAACAGTCACGCGCA
TTATTTTTGCTCGCACTTGTTTGCCAGTCTCTTCACTTGATGTTTGTGGT
GACGAATGAATCCAAGCATATCGAACGCACGTACAGCACACGAAAGGATT
TCACTGCTCTGGAGAAGGCAATGGTGACTCTGCCCATTATATCAACGGTG
TATGGTTTGATGCACGACTTGCTCAGCCAGTTCTCACATTATGTAGATAC
TGTTGGAAAGACACAGGCGAAACAAACTGTTCGAAAGCTCAGTGTTCGTA
AGGAGAGACTGAAGGCTGACTTGAACAAATCGATTGCCAACGCGCGGGAC
AAACATATGAAACCGAGAACTGAAGAACTCCGTTCACGTGCAAAGTCTGT
CGTAGGTGATCTTGATTGCGCCAGTATTGTTTCCATGCTGGGAAACAGAG
GAATACGTGTTGAGCCTGTATCTCAATCTCCAGTGGGTGGAGAGTGA

protein sequence of Ggra3494.t1

>Ggra3494.t1 ID=Ggra3494.t1|Name=Ggra3494.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=649bp
MSPSTRKGRTTTGFVFELPATTDMFQTLASPTRWGPAEYLTILLVLSQVC
TVPVMWLLPRLYFILVFAFWRLAYNVGIGALLHVQSKRAVITAWLHALSP
SARALVHWASTKSMRNDYSWEKLPSCYNAWIAFRALSMIILTNDGLSYSL
LAFNCFNPLHTSPLWKLLICIPTGVALIVLSFWSKGAAHHVLGDFAWYWG
DFFFTVDADLKFDGVFELFPHPMYTVGYAAYYGAALICRSHTLLAISLLA
HMSQLLFLALVEEPHIQKIYGPSSPTPAAEQSTADHQPVTPDRSSSSTLT
ASYDEFLHAAPRLPVIASLVVAFSAVAALAISSRPSTAKAVLLLLSWCLA
HWTLLFYALHPTGDADQNYWMRLFMSRGYLNFHAFSAWQHTYLASFVAKH
ALFLIAASSFDPSKAPNSGSVSETISGVLAGFSLTAIAVVSLASTWNDIG
YFGFFYGDFFVAPKEQKLRTSGMFRYVTHPEATLGYLAYYGIAFIKQSRA
LFLLALVCQSLHLMFVVTNESKHIERTYSTRKDFTALEKAMVTLPIISTV
YGLMHDLLSQFSHYVDTVGKTQAKQTVRKLSVRKERLKADLNKSIANARD
KHMKPRTEELRSRAKSVVGDLDCASIVSMLGNRGIRVEPVSQSPVGGE*

mRNA from alignment at tig00000059_pilon:534829..536775+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3494.t1 ID=Ggra3494.t1|Name=Ggra3494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1947bp|location=Sequence derived from alignment at tig00000059_pilon:534829..536775+ (Gracilaria gracilis GNS1m male)
ATGAGTCCGTCTACCAGAAAAGGCCGTACCACTACCGGCTTCGTGTTCGA
GCTGCCTGCCACCACCGATATGTTTCAAACCTTGGCTTCGCCTACCAGGT
GGGGCCCGGCAGAGTATCTCACCATACTCCTCGTCCTATCGCAAGTGTGC
ACCGTTCCCGTCATGTGGCTGCTACCGCGTTTGTATTTCATCCTCGTGTT
CGCGTTTTGGAGACTTGCGTATAACGTTGGCATTGGTGCCTTACTTCACG
TTCAATCAAAACGCGCCGTTATAACCGCATGGCTTCACGCACTCTCTCCC
TCTGCCCGTGCGCTCGTACATTGGGCGAGCACCAAGTCTATGCGCAACGA
TTATTCATGGGAGAAGCTTCCGTCCTGTTACAATGCATGGATTGCCTTTC
GCGCTCTCTCGATGATCATTCTCACCAACGATGGTCTGTCGTACTCCTTG
CTTGCCTTCAACTGTTTCAATCCGCTCCACACCTCTCCGCTCTGGAAGCT
GCTCATCTGTATTCCCACTGGCGTTGCTCTCATCGTTCTTTCGTTTTGGT
CAAAGGGCGCTGCCCATCATGTTCTGGGTGACTTCGCCTGGTATTGGGGC
GATTTCTTCTTCACAGTTGATGCTGATCTTAAGTTTGATGGTGTCTTTGA
ACTGTTTCCACACCCTATGTATACTGTCGGCTATGCCGCTTACTACGGAG
CTGCACTTATATGCCGTTCTCACACGCTTCTTGCTATATCTTTGCTGGCT
CACATGTCGCAACTTTTGTTCCTAGCCCTTGTCGAAGAGCCTCATATACA
GAAGATATATGGTCCGAGCTCGCCCACTCCTGCGGCGGAACAGTCAACTG
CTGATCATCAACCAGTTACACCAGATCGCTCCTCTTCATCGACTTTGACT
GCGTCGTACGATGAATTTTTGCACGCTGCCCCTCGTTTACCGGTGATCGC
CTCACTTGTAGTTGCCTTCAGCGCTGTGGCGGCGTTGGCAATCTCTTCAC
GCCCGTCCACGGCCAAGGCCGTGCTTTTGTTACTCTCTTGGTGCCTGGCT
CATTGGACCCTTCTATTTTATGCCTTGCACCCCACCGGCGATGCTGATCA
AAACTACTGGATGCGACTGTTCATGTCGAGGGGGTATTTAAACTTCCATG
CATTCTCTGCGTGGCAACACACTTACCTAGCCTCCTTTGTGGCCAAGCAC
GCCTTGTTTTTGATTGCTGCGTCTTCGTTTGATCCTTCCAAGGCTCCAAA
TAGTGGTTCTGTGTCAGAGACAATATCTGGAGTTCTTGCCGGATTCTCTC
TTACGGCTATCGCCGTAGTTAGTTTGGCGTCAACCTGGAACGACATTGGT
TACTTTGGGTTCTTTTATGGCGATTTCTTTGTTGCGCCAAAAGAGCAGAA
GCTGCGAACGTCTGGAATGTTTCGCTATGTCACTCACCCGGAGGCCACTT
TGGGGTATTTGGCATACTATGGAATTGCTTTCATCAAACAGTCACGCGCA
TTATTTTTGCTCGCACTTGTTTGCCAGTCTCTTCACTTGATGTTTGTGGT
GACGAATGAATCCAAGCATATCGAACGCACGTACAGCACACGAAAGGATT
TCACTGCTCTGGAGAAGGCAATGGTGACTCTGCCCATTATATCAACGGTG
TATGGTTTGATGCACGACTTGCTCAGCCAGTTCTCACATTATGTAGATAC
TGTTGGAAAGACACAGGCGAAACAAACTGTTCGAAAGCTCAGTGTTCGTA
AGGAGAGACTGAAGGCTGACTTGAACAAATCGATTGCCAACGCGCGGGAC
AAACATATGAAACCGAGAACTGAAGAACTCCGTTCACGTGCAAAGTCTGT
CGTAGGTGATCTTGATTGCGCCAGTATTGTTTCCATGCTGGGAAACAGAG
GAATACGTGTTGAGCCTGTATCTCAATCTCCAGTGGGTGGAGAGTGA

Coding sequence (CDS) from alignment at tig00000059_pilon:534829..536775+

>Ggra3494.t1 ID=Ggra3494.t1|Name=Ggra3494.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1947bp|location=Sequence derived from alignment at tig00000059_pilon:534829..536775+ (Gracilaria gracilis GNS1m male)
ATGAGTCCGTCTACCAGAAAAGGCCGTACCACTACCGGCTTCGTGTTCGA
GCTGCCTGCCACCACCGATATGTTTCAAACCTTGGCTTCGCCTACCAGGT
GGGGCCCGGCAGAGTATCTCACCATACTCCTCGTCCTATCGCAAGTGTGC
ACCGTTCCCGTCATGTGGCTGCTACCGCGTTTGTATTTCATCCTCGTGTT
CGCGTTTTGGAGACTTGCGTATAACGTTGGCATTGGTGCCTTACTTCACG
TTCAATCAAAACGCGCCGTTATAACCGCATGGCTTCACGCACTCTCTCCC
TCTGCCCGTGCGCTCGTACATTGGGCGAGCACCAAGTCTATGCGCAACGA
TTATTCATGGGAGAAGCTTCCGTCCTGTTACAATGCATGGATTGCCTTTC
GCGCTCTCTCGATGATCATTCTCACCAACGATGGTCTGTCGTACTCCTTG
CTTGCCTTCAACTGTTTCAATCCGCTCCACACCTCTCCGCTCTGGAAGCT
GCTCATCTGTATTCCCACTGGCGTTGCTCTCATCGTTCTTTCGTTTTGGT
CAAAGGGCGCTGCCCATCATGTTCTGGGTGACTTCGCCTGGTATTGGGGC
GATTTCTTCTTCACAGTTGATGCTGATCTTAAGTTTGATGGTGTCTTTGA
ACTGTTTCCACACCCTATGTATACTGTCGGCTATGCCGCTTACTACGGAG
CTGCACTTATATGCCGTTCTCACACGCTTCTTGCTATATCTTTGCTGGCT
CACATGTCGCAACTTTTGTTCCTAGCCCTTGTCGAAGAGCCTCATATACA
GAAGATATATGGTCCGAGCTCGCCCACTCCTGCGGCGGAACAGTCAACTG
CTGATCATCAACCAGTTACACCAGATCGCTCCTCTTCATCGACTTTGACT
GCGTCGTACGATGAATTTTTGCACGCTGCCCCTCGTTTACCGGTGATCGC
CTCACTTGTAGTTGCCTTCAGCGCTGTGGCGGCGTTGGCAATCTCTTCAC
GCCCGTCCACGGCCAAGGCCGTGCTTTTGTTACTCTCTTGGTGCCTGGCT
CATTGGACCCTTCTATTTTATGCCTTGCACCCCACCGGCGATGCTGATCA
AAACTACTGGATGCGACTGTTCATGTCGAGGGGGTATTTAAACTTCCATG
CATTCTCTGCGTGGCAACACACTTACCTAGCCTCCTTTGTGGCCAAGCAC
GCCTTGTTTTTGATTGCTGCGTCTTCGTTTGATCCTTCCAAGGCTCCAAA
TAGTGGTTCTGTGTCAGAGACAATATCTGGAGTTCTTGCCGGATTCTCTC
TTACGGCTATCGCCGTAGTTAGTTTGGCGTCAACCTGGAACGACATTGGT
TACTTTGGGTTCTTTTATGGCGATTTCTTTGTTGCGCCAAAAGAGCAGAA
GCTGCGAACGTCTGGAATGTTTCGCTATGTCACTCACCCGGAGGCCACTT
TGGGGTATTTGGCATACTATGGAATTGCTTTCATCAAACAGTCACGCGCA
TTATTTTTGCTCGCACTTGTTTGCCAGTCTCTTCACTTGATGTTTGTGGT
GACGAATGAATCCAAGCATATCGAACGCACGTACAGCACACGAAAGGATT
TCACTGCTCTGGAGAAGGCAATGGTGACTCTGCCCATTATATCAACGGTG
TATGGTTTGATGCACGACTTGCTCAGCCAGTTCTCACATTATGTAGATAC
TGTTGGAAAGACACAGGCGAAACAAACTGTTCGAAAGCTCAGTGTTCGTA
AGGAGAGACTGAAGGCTGACTTGAACAAATCGATTGCCAACGCGCGGGAC
AAACATATGAAACCGAGAACTGAAGAACTCCGTTCACGTGCAAAGTCTGT
CGTAGGTGATCTTGATTGCGCCAGTATTGTTTCCATGCTGGGAAACAGAG
GAATACGTGTTGAGCCTGTATCTCAATCTCCAGTGGGTGGAGAGTGA