Ggra3489.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3489.t1
Unique NameGgra3489.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:471840..473078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707147.1
Preferred nameHIS5
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00888,RC00945
KEGG koko:K00817,ko:K01814
KEGG ReactionR00694,R00734,R03243,R04640
KEGG Pathwayko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004400,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010045,GO:0016053,GO:0016740,GO:0016769,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue3.49e-142
EggNOG OGsCOG0079@1|root,KOG0633@2759|Eukaryota
EC2.6.1.9,5.3.1.16
Descriptionhistidinol-phosphate transaminase activity
COG categoryE
BiGG ReactioniMM904.YIL116W,iND750.YIL116W
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3489Ggra3489Gracilaria gracilis GNS1m malegenetig00000059_pilon 471840..473078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3489.t1.stop1Ggra3489.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 471840..471842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3489.t1.CDS1Ggra3489.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 471840..473078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3489.t1.exon1Ggra3489.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 471840..473078 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3489.t1.start1Ggra3489.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 473076..473078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3489.t1Ggra3489.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 471840..473078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3489.t1 ID=Ggra3489.t1|Name=Ggra3489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=413bp
MITSAPAFQTCVPLRLAPGRSVAVAITAVQPRVSPAAVMNATKRYSPEDS
IRPALRQIAPYTPILPYEVLAEKLGRHPSDIVKLDANENPFGPAPSVASA
LADAKYLHIYPDPESSFLRDALADYTRVPKEYILAGAGADELIDLLFRLF
VTPGTQDAIVNCPPTFGMYKFDADVNGARIINVPRGADFEVDIAAIERVF
ADEQFPPKLVFVASPNNPDGSVLSEDDVKRLLALPTVVVIDEAYFEFADV
NILSWVPSYDNLVVLRTFSKWAALAGMRVGYGAFPLPIIKHMWKIKQPYN
VSVAGQIAGIVSIQQKHDLLAKVDRMVSQRHIFYDRITKYEWLRPYPSQS
NYVLCRVGGGRDAAQVKQQLADRGILIRYYTTPGLTDCIRISMGTEQQME
AMYSALDELNSL*
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spliced messenger RNA

>Ggra3489.t1 ID=Ggra3489.t1|Name=Ggra3489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000059_pilon:471840..473078- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACGTCTGCGCCGGCGTTCCAGACATGCGTTCCGCTGCGCCTCGC
CCCCGGCCGCTCCGTCGCCGTTGCGATCACCGCTGTTCAGCCACGCGTCT
CTCCAGCAGCCGTGATGAACGCCACCAAACGGTATTCGCCCGAGGACTCA
ATACGACCAGCGCTCCGCCAAATCGCGCCTTACACCCCGATTCTCCCGTA
CGAAGTGCTTGCCGAGAAGCTCGGACGCCACCCGTCGGACATTGTCAAGC
TGGATGCCAACGAGAACCCGTTCGGCCCGGCGCCTTCCGTCGCGTCTGCG
CTTGCCGATGCCAAATACCTGCACATTTACCCAGACCCCGAATCGTCCTT
CTTGCGCGACGCTCTCGCCGACTATACCCGGGTGCCGAAGGAGTATATCC
TGGCGGGTGCTGGCGCTGATGAGCTCATTGACTTGTTGTTTCGACTGTTT
GTCACCCCCGGTACGCAGGATGCCATTGTCAACTGCCCGCCCACTTTTGG
CATGTACAAGTTTGATGCCGATGTGAACGGTGCGCGCATTATTAACGTTC
CCAGAGGTGCAGATTTTGAAGTCGATATCGCCGCAATAGAACGCGTGTTT
GCCGACGAACAGTTCCCGCCCAAGCTCGTCTTCGTGGCGAGTCCGAACAA
TCCGGATGGTAGCGTGCTGTCAGAAGATGATGTTAAACGTCTTCTTGCTT
TACCGACAGTGGTTGTCATTGATGAAGCATATTTTGAGTTTGCGGACGTC
AACATACTTTCGTGGGTTCCTTCTTATGATAACCTAGTTGTGCTGCGTAC
GTTTTCGAAATGGGCCGCGTTGGCGGGCATGCGTGTCGGATATGGAGCAT
TTCCTCTACCGATCATAAAGCATATGTGGAAAATCAAGCAACCGTACAAT
GTGTCTGTCGCCGGCCAGATTGCGGGCATAGTCTCCATCCAACAGAAGCA
TGATTTGTTGGCCAAGGTAGATCGCATGGTGAGCCAACGTCACATCTTTT
ACGACAGGATCACCAAGTATGAATGGCTCCGGCCTTATCCGTCGCAATCG
AATTACGTCCTTTGTCGCGTTGGAGGCGGTCGCGATGCTGCCCAGGTTAA
GCAGCAGTTGGCCGACCGCGGCATTTTGATACGATACTATACAACTCCGG
GTTTGACTGATTGTATTCGAATATCCATGGGTACAGAACAACAAATGGAA
GCCATGTACTCTGCGCTGGACGAATTGAATAGCTTGTAA
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protein sequence of Ggra3489.t1

>Ggra3489.t1 ID=Ggra3489.t1|Name=Ggra3489.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=413bp
MITSAPAFQTCVPLRLAPGRSVAVAITAVQPRVSPAAVMNATKRYSPEDS
IRPALRQIAPYTPILPYEVLAEKLGRHPSDIVKLDANENPFGPAPSVASA
LADAKYLHIYPDPESSFLRDALADYTRVPKEYILAGAGADELIDLLFRLF
VTPGTQDAIVNCPPTFGMYKFDADVNGARIINVPRGADFEVDIAAIERVF
ADEQFPPKLVFVASPNNPDGSVLSEDDVKRLLALPTVVVIDEAYFEFADV
NILSWVPSYDNLVVLRTFSKWAALAGMRVGYGAFPLPIIKHMWKIKQPYN
VSVAGQIAGIVSIQQKHDLLAKVDRMVSQRHIFYDRITKYEWLRPYPSQS
NYVLCRVGGGRDAAQVKQQLADRGILIRYYTTPGLTDCIRISMGTEQQME
AMYSALDELNSL*
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mRNA from alignment at tig00000059_pilon:471840..473078-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3489.t1 ID=Ggra3489.t1|Name=Ggra3489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000059_pilon:471840..473078- (Gracilaria gracilis GNS1m male)
ATGATCACGTCTGCGCCGGCGTTCCAGACATGCGTTCCGCTGCGCCTCGC
CCCCGGCCGCTCCGTCGCCGTTGCGATCACCGCTGTTCAGCCACGCGTCT
CTCCAGCAGCCGTGATGAACGCCACCAAACGGTATTCGCCCGAGGACTCA
ATACGACCAGCGCTCCGCCAAATCGCGCCTTACACCCCGATTCTCCCGTA
CGAAGTGCTTGCCGAGAAGCTCGGACGCCACCCGTCGGACATTGTCAAGC
TGGATGCCAACGAGAACCCGTTCGGCCCGGCGCCTTCCGTCGCGTCTGCG
CTTGCCGATGCCAAATACCTGCACATTTACCCAGACCCCGAATCGTCCTT
CTTGCGCGACGCTCTCGCCGACTATACCCGGGTGCCGAAGGAGTATATCC
TGGCGGGTGCTGGCGCTGATGAGCTCATTGACTTGTTGTTTCGACTGTTT
GTCACCCCCGGTACGCAGGATGCCATTGTCAACTGCCCGCCCACTTTTGG
CATGTACAAGTTTGATGCCGATGTGAACGGTGCGCGCATTATTAACGTTC
CCAGAGGTGCAGATTTTGAAGTCGATATCGCCGCAATAGAACGCGTGTTT
GCCGACGAACAGTTCCCGCCCAAGCTCGTCTTCGTGGCGAGTCCGAACAA
TCCGGATGGTAGCGTGCTGTCAGAAGATGATGTTAAACGTCTTCTTGCTT
TACCGACAGTGGTTGTCATTGATGAAGCATATTTTGAGTTTGCGGACGTC
AACATACTTTCGTGGGTTCCTTCTTATGATAACCTAGTTGTGCTGCGTAC
GTTTTCGAAATGGGCCGCGTTGGCGGGCATGCGTGTCGGATATGGAGCAT
TTCCTCTACCGATCATAAAGCATATGTGGAAAATCAAGCAACCGTACAAT
GTGTCTGTCGCCGGCCAGATTGCGGGCATAGTCTCCATCCAACAGAAGCA
TGATTTGTTGGCCAAGGTAGATCGCATGGTGAGCCAACGTCACATCTTTT
ACGACAGGATCACCAAGTATGAATGGCTCCGGCCTTATCCGTCGCAATCG
AATTACGTCCTTTGTCGCGTTGGAGGCGGTCGCGATGCTGCCCAGGTTAA
GCAGCAGTTGGCCGACCGCGGCATTTTGATACGATACTATACAACTCCGG
GTTTGACTGATTGTATTCGAATATCCATGGGTACAGAACAACAAATGGAA
GCCATGTACTCTGCGCTGGACGAATTGAATAGCTTGTAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:471840..473078-

>Ggra3489.t1 ID=Ggra3489.t1|Name=Ggra3489.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1239bp|location=Sequence derived from alignment at tig00000059_pilon:471840..473078- (Gracilaria gracilis GNS1m male)
ATGATCACGTCTGCGCCGGCGTTCCAGACATGCGTTCCGCTGCGCCTCGC
CCCCGGCCGCTCCGTCGCCGTTGCGATCACCGCTGTTCAGCCACGCGTCT
CTCCAGCAGCCGTGATGAACGCCACCAAACGGTATTCGCCCGAGGACTCA
ATACGACCAGCGCTCCGCCAAATCGCGCCTTACACCCCGATTCTCCCGTA
CGAAGTGCTTGCCGAGAAGCTCGGACGCCACCCGTCGGACATTGTCAAGC
TGGATGCCAACGAGAACCCGTTCGGCCCGGCGCCTTCCGTCGCGTCTGCG
CTTGCCGATGCCAAATACCTGCACATTTACCCAGACCCCGAATCGTCCTT
CTTGCGCGACGCTCTCGCCGACTATACCCGGGTGCCGAAGGAGTATATCC
TGGCGGGTGCTGGCGCTGATGAGCTCATTGACTTGTTGTTTCGACTGTTT
GTCACCCCCGGTACGCAGGATGCCATTGTCAACTGCCCGCCCACTTTTGG
CATGTACAAGTTTGATGCCGATGTGAACGGTGCGCGCATTATTAACGTTC
CCAGAGGTGCAGATTTTGAAGTCGATATCGCCGCAATAGAACGCGTGTTT
GCCGACGAACAGTTCCCGCCCAAGCTCGTCTTCGTGGCGAGTCCGAACAA
TCCGGATGGTAGCGTGCTGTCAGAAGATGATGTTAAACGTCTTCTTGCTT
TACCGACAGTGGTTGTCATTGATGAAGCATATTTTGAGTTTGCGGACGTC
AACATACTTTCGTGGGTTCCTTCTTATGATAACCTAGTTGTGCTGCGTAC
GTTTTCGAAATGGGCCGCGTTGGCGGGCATGCGTGTCGGATATGGAGCAT
TTCCTCTACCGATCATAAAGCATATGTGGAAAATCAAGCAACCGTACAAT
GTGTCTGTCGCCGGCCAGATTGCGGGCATAGTCTCCATCCAACAGAAGCA
TGATTTGTTGGCCAAGGTAGATCGCATGGTGAGCCAACGTCACATCTTTT
ACGACAGGATCACCAAGTATGAATGGCTCCGGCCTTATCCGTCGCAATCG
AATTACGTCCTTTGTCGCGTTGGAGGCGGTCGCGATGCTGCCCAGGTTAA
GCAGCAGTTGGCCGACCGCGGCATTTTGATACGATACTATACAACTCCGG
GTTTGACTGATTGTATTCGAATATCCATGGGTACAGAACAACAAATGGAA
GCCATGTACTCTGCGCTGGACGAATTGAATAGCTTGTAA
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