Ggra3485.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3485.t1
Unique NameGgra3485.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:425040..426502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3485Ggra3485Gracilaria gracilis GNS1m malegenetig00000059_pilon 425040..426502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3485.t1Ggra3485.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 425040..426502 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3485.t1.stop1Ggra3485.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 425040..425042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3485.t1.CDS1Ggra3485.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 425040..425932 -
Ggra3485.t1.CDS2Ggra3485.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 426202..426502 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3485.t1.exon1Ggra3485.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 425040..425932 -
Ggra3485.t1.exon2Ggra3485.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 426202..426502 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3485.t1.intron1Ggra3485.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 425933..426201 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3485.t1.start1Ggra3485.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 426500..426502 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3485.t1 ID=Ggra3485.t1|Name=Ggra3485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MLEGIRAKECRNPSEHNTNQSTGDVDYVEAFVESPQEAIDTQAISPFESY
DDQDNPNLCSGSNTQTASVASASSDERVQTITDNVMLLNDSDQTYPEFVI
HENALASYLRKAWREMVHNEGWMTAKIHSRFGDNTTGVFRSVFSLMIELI
NRQGGTQSIIGYKESKLNGVRIYSSPCHSEALQQYERSLQWRVKVVLFDL
YSDGLCLSGSGSQSAKLMRVRFPNIRGVSEECHEVGIVPIVDTYNITASD
SAVREEKNALWHRFTFLALKEMVNKSHLGFDVDGVTVFPRLCMVVAGQVQ
EKPCSGLNGHGSYFDCTHCLMPPRKPRRKTTFFESHEAGSNNFGADSQSQ
AELSTESISDFERSIQLSDSPTFNRIKKIQMTKRSFKRRDVFDTVRR*
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spliced messenger RNA

>Ggra3485.t1 ID=Ggra3485.t1|Name=Ggra3485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000059_pilon:425040..426502- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGAAGGTATTCGGGCAAAAGAATGTCGGAATCCTAGCGAACACAA
CACCAACCAGAGCACTGGAGATGTGGATTATGTGGAAGCGTTTGTTGAGA
GCCCACAAGAAGCGATTGATACTCAGGCAATATCTCCGTTTGAATCATAT
GATGATCAAGATAACCCAAATCTTTGCTCCGGTTCGAATACGCAAACTGC
TTCAGTAGCAAGTGCTTCAAGTGATGAACGTGTTCAAACGATTACTGATA
ACGTAATGCTTCTAAATGATAGCGATCAGACGTACCCAGAGTTCGTAATC
CACGAGAATGCTTTAGCGTCGTACCTGCGAAAGGCTTGGAGAGAGATGGT
GCACAATGAAGGATGGATGACAGCCAAAATACACTCACGCTTCGGAGACA
ATACGACAGGAGTGTTTCGAAGTGTCTTTTCCCTCATGATAGAGTTGATA
AACCGACAAGGTGGAACACAAAGTATCATCGGGTATAAAGAATCAAAGTT
GAACGGAGTGCGAATCTACTCATCGCCTTGTCATTCTGAGGCATTGCAAC
AGTACGAACGCTCTCTTCAGTGGCGAGTTAAAGTTGTTCTCTTCGATTTA
TACAGTGATGGTTTATGCCTGAGTGGTTCCGGATCACAGTCTGCAAAACT
CATGAGGGTTAGGTTTCCCAATATTCGTGGTGTATCAGAAGAATGCCATG
AGGTTGGAATAGTTCCAATAGTGGACACATACAATATTACCGCCTCCGAT
TCGGCCGTCAGAGAAGAGAAAAATGCACTTTGGCATAGATTTACCTTCCT
TGCTTTGAAGGAAATGGTAAACAAATCTCATCTTGGGTTCGATGTCGACG
GTGTGACTGTGTTCCCCAGACTCTGTATGGTGGTCGCCGGTCAAGTGCAG
GAAAAACCATGTTCCGGTCTTAATGGCCATGGAAGCTACTTCGATTGTAC
CCATTGTCTCATGCCCCCAAGGAAACCCAGGAGAAAGACCACGTTTTTTG
AATCACATGAGGCTGGAAGCAATAACTTTGGAGCAGACTCACAATCTCAA
GCCGAACTTTCTACTGAGAGTATATCTGACTTTGAGAGGAGCATTCAGTT
ATCTGATTCTCCAACTTTCAACCGAATCAAGAAAATACAGATGACAAAAC
GCTCTTTCAAGCGCAGAGATGTCTTCGATACTGTGAGAAGGTAG
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protein sequence of Ggra3485.t1

>Ggra3485.t1 ID=Ggra3485.t1|Name=Ggra3485.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MLEGIRAKECRNPSEHNTNQSTGDVDYVEAFVESPQEAIDTQAISPFESY
DDQDNPNLCSGSNTQTASVASASSDERVQTITDNVMLLNDSDQTYPEFVI
HENALASYLRKAWREMVHNEGWMTAKIHSRFGDNTTGVFRSVFSLMIELI
NRQGGTQSIIGYKESKLNGVRIYSSPCHSEALQQYERSLQWRVKVVLFDL
YSDGLCLSGSGSQSAKLMRVRFPNIRGVSEECHEVGIVPIVDTYNITASD
SAVREEKNALWHRFTFLALKEMVNKSHLGFDVDGVTVFPRLCMVVAGQVQ
EKPCSGLNGHGSYFDCTHCLMPPRKPRRKTTFFESHEAGSNNFGADSQSQ
AELSTESISDFERSIQLSDSPTFNRIKKIQMTKRSFKRRDVFDTVRR*
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mRNA from alignment at tig00000059_pilon:425040..426502-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3485.t1 ID=Ggra3485.t1|Name=Ggra3485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1463bp|location=Sequence derived from alignment at tig00000059_pilon:425040..426502- (Gracilaria gracilis GNS1m male)
ATGTTAGAAGGTATTCGGGCAAAAGAATGTCGGAATCCTAGCGAACACAA
CACCAACCAGAGCACTGGAGATGTGGATTATGTGGAAGCGTTTGTTGAGA
GCCCACAAGAAGCGATTGATACTCAGGCAATATCTCCGTTTGAATCATAT
GATGATCAAGATAACCCAAATCTTTGCTCCGGTTCGAATACGCAAACTGC
TTCAGTAGCAAGTGCTTCAAGTGATGAACGTGTTCAAACGATTACTGATA
ACGTAATGCTTCTAAATGATAGCGATCAGACGTACCCAGAGTTCGTAATC
CGTCTGCAAATACCAGAGGTAGGAGTATTGCAGCTGACCCTATGAAGTTC
TACCTCGAGTCCCATGACACGTCAGAAACATTGTACCCAGGAAAATGAAT
CCTTAGCCCACCTTCAAATGAGCTCACGAAAGAGTCTCAGAGAGTGCTGA
ACTATTGTTCGACGAAATACATGACTCTTCAAGAGAGTAGAGATCTCTTC
CATTTGTTTCATGACCTTGGACATTTAGAAGAACATAGCCATCTCAGAAA
CTTCACATCTGACTGTATAGACGAGAATGCTTTAGCGTCGTACCTGCGAA
AGGCTTGGAGAGAGATGGTGCACAATGAAGGATGGATGACAGCCAAAATA
CACTCACGCTTCGGAGACAATACGACAGGAGTGTTTCGAAGTGTCTTTTC
CCTCATGATAGAGTTGATAAACCGACAAGGTGGAACACAAAGTATCATCG
GGTATAAAGAATCAAAGTTGAACGGAGTGCGAATCTACTCATCGCCTTGT
CATTCTGAGGCATTGCAACAGTACGAACGCTCTCTTCAGTGGCGAGTTAA
AGTTGTTCTCTTCGATTTATACAGTGATGGTTTATGCCTGAGTGGTTCCG
GATCACAGTCTGCAAAACTCATGAGGGTTAGGTTTCCCAATATTCGTGGT
GTATCAGAAGAATGCCATGAGGTTGGAATAGTTCCAATAGTGGACACATA
CAATATTACCGCCTCCGATTCGGCCGTCAGAGAAGAGAAAAATGCACTTT
GGCATAGATTTACCTTCCTTGCTTTGAAGGAAATGGTAAACAAATCTCAT
CTTGGGTTCGATGTCGACGGTGTGACTGTGTTCCCCAGACTCTGTATGGT
GGTCGCCGGTCAAGTGCAGGAAAAACCATGTTCCGGTCTTAATGGCCATG
GAAGCTACTTCGATTGTACCCATTGTCTCATGCCCCCAAGGAAACCCAGG
AGAAAGACCACGTTTTTTGAATCACATGAGGCTGGAAGCAATAACTTTGG
AGCAGACTCACAATCTCAAGCCGAACTTTCTACTGAGAGTATATCTGACT
TTGAGAGGAGCATTCAGTTATCTGATTCTCCAACTTTCAACCGAATCAAG
AAAATACAGATGACAAAACGCTCTTTCAAGCGCAGAGATGTCTTCGATAC
TGTGAGAAGGTAG
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Coding sequence (CDS) from alignment at tig00000059_pilon:425040..426502-

>Ggra3485.t1 ID=Ggra3485.t1|Name=Ggra3485.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000059_pilon:425040..426502- (Gracilaria gracilis GNS1m male)
ATGTTAGAAGGTATTCGGGCAAAAGAATGTCGGAATCCTAGCGAACACAA
CACCAACCAGAGCACTGGAGATGTGGATTATGTGGAAGCGTTTGTTGAGA
GCCCACAAGAAGCGATTGATACTCAGGCAATATCTCCGTTTGAATCATAT
GATGATCAAGATAACCCAAATCTTTGCTCCGGTTCGAATACGCAAACTGC
TTCAGTAGCAAGTGCTTCAAGTGATGAACGTGTTCAAACGATTACTGATA
ACGTAATGCTTCTAAATGATAGCGATCAGACGTACCCAGAGTTCGTAATC
CACGAGAATGCTTTAGCGTCGTACCTGCGAAAGGCTTGGAGAGAGATGGT
GCACAATGAAGGATGGATGACAGCCAAAATACACTCACGCTTCGGAGACA
ATACGACAGGAGTGTTTCGAAGTGTCTTTTCCCTCATGATAGAGTTGATA
AACCGACAAGGTGGAACACAAAGTATCATCGGGTATAAAGAATCAAAGTT
GAACGGAGTGCGAATCTACTCATCGCCTTGTCATTCTGAGGCATTGCAAC
AGTACGAACGCTCTCTTCAGTGGCGAGTTAAAGTTGTTCTCTTCGATTTA
TACAGTGATGGTTTATGCCTGAGTGGTTCCGGATCACAGTCTGCAAAACT
CATGAGGGTTAGGTTTCCCAATATTCGTGGTGTATCAGAAGAATGCCATG
AGGTTGGAATAGTTCCAATAGTGGACACATACAATATTACCGCCTCCGAT
TCGGCCGTCAGAGAAGAGAAAAATGCACTTTGGCATAGATTTACCTTCCT
TGCTTTGAAGGAAATGGTAAACAAATCTCATCTTGGGTTCGATGTCGACG
GTGTGACTGTGTTCCCCAGACTCTGTATGGTGGTCGCCGGTCAAGTGCAG
GAAAAACCATGTTCCGGTCTTAATGGCCATGGAAGCTACTTCGATTGTAC
CCATTGTCTCATGCCCCCAAGGAAACCCAGGAGAAAGACCACGTTTTTTG
AATCACATGAGGCTGGAAGCAATAACTTTGGAGCAGACTCACAATCTCAA
GCCGAACTTTCTACTGAGAGTATATCTGACTTTGAGAGGAGCATTCAGTT
ATCTGATTCTCCAACTTTCAACCGAATCAAGAAAATACAGATGACAAAAC
GCTCTTTCAAGCGCAGAGATGTCTTCGATACTGTGAGAAGGTAG
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