Ggra3480.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3480.t1
Unique Name	Ggra3480.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	593

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:319154..320932 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3480	Ggra3480	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 319154..320932 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3480.t1.stop1	Ggra3480.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 319154..319156 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3480.t1.CDS1	Ggra3480.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 319154..320932 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3480.t1.exon1	Ggra3480.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 319154..320932 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3480.t1.start1	Ggra3480.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 320930..320932 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3480.t1	Ggra3480.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 319154..320932 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:319154..320932-
coding sequence from alignment at tig00000059_pilon:319154..320932-

mRNA sequence

>Ggra3480.t1 ID=Ggra3480.t1|Name=Ggra3480.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=593bp
MTTTASEAPPLPPTKPKRENLIPSPTKPTTLPSPTKTVWPAPPPSTPVGN
WVLDQHSFAPKRDYFISYCAGLSRRRITDNLMWFRFPNVTDVSRQQVAVH
YSRLAWVGGPLAELVASPAANKSDADGAVGNDVPMADGAAADDDDAHAEK
NDTEERTIGDADAHDSVKKPSAELPEKKVSVDEDPDHPYRRPDPYDLSEH
DTPRTFAIVIKFLYCEEIRFNYLTFDELVSLATTAHRWNLTDLYHATFAY
VMDQDLLAGGLGIRTFLPLVAHEETPEPFRRYFCIAVGHHFDVLYPRLRA
VREANPTSTPVLWKTIFNQKMMSHVLHCISLYSPGEYDEYLLDIILRYYE
RQSDATDDQLSGMLSQLSWDDIDVAGVFGNEGASRSWSSRAVRLAALASY
APQTAALEVRIPWNIPLQRLLKQQVWSFQTEHVPCGPYVCYLHVRKGEGR
EVSLFVHIWNRENKPLKNDARHEIVRVKCRATEGNCTCDSSKQWSDSSHG
FLENLRFEGKLERYPGLGWSQFLEEKRLDEWRHAHGENCGLAITTVLQFV
NAKRQFEGPARRSASRTLSPGRLQTPIQKKRSGSRMKLRESR*

spliced messenger RNA

>Ggra3480.t1 ID=Ggra3480.t1|Name=Ggra3480.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00000059_pilon:319154..320932- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACCACCGCGTCCGAAGCGCCGCCATTGCCGCCCACCAAGCCCAA
GCGCGAGAATCTCATCCCGTCGCCCACCAAGCCCACAACGCTTCCGTCCC
CGACCAAGACCGTATGGCCCGCGCCCCCTCCGTCCACCCCCGTGGGCAAC
TGGGTTCTGGATCAGCACTCGTTCGCCCCGAAACGCGATTATTTCATCTC
GTACTGTGCCGGCCTGTCTCGTCGGAGAATCACCGACAATCTCATGTGGT
TTAGGTTTCCCAACGTTACCGATGTCAGCAGACAACAGGTCGCCGTGCAT
TACTCAAGATTGGCTTGGGTTGGCGGCCCGCTTGCGGAGCTTGTTGCCTC
TCCCGCTGCGAACAAATCCGATGCCGATGGCGCGGTTGGCAACGATGTGC
CCATGGCGGATGGCGCTGCTGCTGATGATGATGATGCTCACGCTGAGAAG
AACGACACCGAAGAGCGCACCATAGGCGATGCCGACGCGCATGATTCGGT
CAAGAAACCGAGTGCTGAGCTCCCTGAAAAAAAAGTGTCGGTTGACGAGG
ATCCTGATCACCCTTATCGCCGCCCAGATCCATACGATCTTTCCGAACAT
GATACTCCGCGCACTTTTGCGATCGTCATCAAATTCCTTTACTGCGAAGA
GATTCGATTCAACTATCTCACGTTTGATGAATTGGTTTCACTTGCTACCA
CCGCCCATCGATGGAACCTTACAGATTTGTATCACGCCACGTTTGCATAC
GTGATGGACCAGGACTTGTTGGCTGGTGGTTTGGGCATCCGAACATTTCT
TCCGCTGGTGGCGCATGAGGAGACGCCAGAACCTTTTCGACGATACTTTT
GCATCGCTGTGGGGCATCATTTCGATGTACTCTATCCGCGTCTTCGGGCT
GTGAGGGAAGCAAACCCGACCAGCACGCCTGTGTTATGGAAGACTATATT
CAACCAAAAGATGATGAGCCATGTTTTGCATTGCATTTCATTGTATTCGC
CTGGAGAGTATGATGAATATCTTCTTGATATAATCCTGAGATACTATGAA
CGGCAAAGTGATGCTACGGATGATCAATTGTCGGGTATGCTCAGCCAACT
ATCGTGGGATGACATTGATGTGGCTGGTGTGTTTGGCAACGAGGGTGCGA
GCAGATCGTGGAGCTCACGAGCGGTTCGTCTGGCCGCGCTTGCTTCGTAT
GCGCCGCAAACCGCCGCGCTGGAGGTTCGTATTCCATGGAACATTCCATT
GCAACGTCTGCTCAAGCAGCAGGTGTGGAGTTTCCAAACAGAACACGTTC
CATGTGGCCCTTATGTATGTTATTTACACGTACGCAAAGGCGAGGGGCGA
GAAGTTTCCTTGTTTGTTCACATCTGGAATCGAGAGAACAAGCCGTTGAA
GAACGACGCGCGCCACGAGATCGTGCGCGTCAAGTGTCGGGCCACAGAAG
GAAACTGTACGTGCGATAGTTCGAAGCAATGGAGTGATTCGTCGCATGGG
TTTTTGGAGAACTTGAGATTTGAAGGCAAGCTGGAGCGATACCCGGGGCT
GGGATGGAGCCAGTTTTTGGAGGAGAAGCGACTGGACGAATGGCGTCATG
CGCACGGAGAGAATTGTGGTTTGGCTATTACCACGGTTCTACAGTTTGTG
AATGCAAAACGACAGTTTGAGGGACCGGCTAGACGGAGCGCTTCTAGAAC
GCTTAGTCCTGGGCGTTTGCAAACGCCTATACAAAAGAAGCGCAGTGGCA
GCAGGATGAAACTGCGTGAATCGAGATAG

protein sequence of Ggra3480.t1

>Ggra3480.t1 ID=Ggra3480.t1|Name=Ggra3480.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=593bp
MTTTASEAPPLPPTKPKRENLIPSPTKPTTLPSPTKTVWPAPPPSTPVGN
WVLDQHSFAPKRDYFISYCAGLSRRRITDNLMWFRFPNVTDVSRQQVAVH
YSRLAWVGGPLAELVASPAANKSDADGAVGNDVPMADGAAADDDDAHAEK
NDTEERTIGDADAHDSVKKPSAELPEKKVSVDEDPDHPYRRPDPYDLSEH
DTPRTFAIVIKFLYCEEIRFNYLTFDELVSLATTAHRWNLTDLYHATFAY
VMDQDLLAGGLGIRTFLPLVAHEETPEPFRRYFCIAVGHHFDVLYPRLRA
VREANPTSTPVLWKTIFNQKMMSHVLHCISLYSPGEYDEYLLDIILRYYE
RQSDATDDQLSGMLSQLSWDDIDVAGVFGNEGASRSWSSRAVRLAALASY
APQTAALEVRIPWNIPLQRLLKQQVWSFQTEHVPCGPYVCYLHVRKGEGR
EVSLFVHIWNRENKPLKNDARHEIVRVKCRATEGNCTCDSSKQWSDSSHG
FLENLRFEGKLERYPGLGWSQFLEEKRLDEWRHAHGENCGLAITTVLQFV
NAKRQFEGPARRSASRTLSPGRLQTPIQKKRSGSRMKLRESR*

mRNA from alignment at tig00000059_pilon:319154..320932-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3480.t1 ID=Ggra3480.t1|Name=Ggra3480.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00000059_pilon:319154..320932- (Gracilaria gracilis GNS1m male)
ATGACCACCACCGCGTCCGAAGCGCCGCCATTGCCGCCCACCAAGCCCAA
GCGCGAGAATCTCATCCCGTCGCCCACCAAGCCCACAACGCTTCCGTCCC
CGACCAAGACCGTATGGCCCGCGCCCCCTCCGTCCACCCCCGTGGGCAAC
TGGGTTCTGGATCAGCACTCGTTCGCCCCGAAACGCGATTATTTCATCTC
GTACTGTGCCGGCCTGTCTCGTCGGAGAATCACCGACAATCTCATGTGGT
TTAGGTTTCCCAACGTTACCGATGTCAGCAGACAACAGGTCGCCGTGCAT
TACTCAAGATTGGCTTGGGTTGGCGGCCCGCTTGCGGAGCTTGTTGCCTC
TCCCGCTGCGAACAAATCCGATGCCGATGGCGCGGTTGGCAACGATGTGC
CCATGGCGGATGGCGCTGCTGCTGATGATGATGATGCTCACGCTGAGAAG
AACGACACCGAAGAGCGCACCATAGGCGATGCCGACGCGCATGATTCGGT
CAAGAAACCGAGTGCTGAGCTCCCTGAAAAAAAAGTGTCGGTTGACGAGG
ATCCTGATCACCCTTATCGCCGCCCAGATCCATACGATCTTTCCGAACAT
GATACTCCGCGCACTTTTGCGATCGTCATCAAATTCCTTTACTGCGAAGA
GATTCGATTCAACTATCTCACGTTTGATGAATTGGTTTCACTTGCTACCA
CCGCCCATCGATGGAACCTTACAGATTTGTATCACGCCACGTTTGCATAC
GTGATGGACCAGGACTTGTTGGCTGGTGGTTTGGGCATCCGAACATTTCT
TCCGCTGGTGGCGCATGAGGAGACGCCAGAACCTTTTCGACGATACTTTT
GCATCGCTGTGGGGCATCATTTCGATGTACTCTATCCGCGTCTTCGGGCT
GTGAGGGAAGCAAACCCGACCAGCACGCCTGTGTTATGGAAGACTATATT
CAACCAAAAGATGATGAGCCATGTTTTGCATTGCATTTCATTGTATTCGC
CTGGAGAGTATGATGAATATCTTCTTGATATAATCCTGAGATACTATGAA
CGGCAAAGTGATGCTACGGATGATCAATTGTCGGGTATGCTCAGCCAACT
ATCGTGGGATGACATTGATGTGGCTGGTGTGTTTGGCAACGAGGGTGCGA
GCAGATCGTGGAGCTCACGAGCGGTTCGTCTGGCCGCGCTTGCTTCGTAT
GCGCCGCAAACCGCCGCGCTGGAGGTTCGTATTCCATGGAACATTCCATT
GCAACGTCTGCTCAAGCAGCAGGTGTGGAGTTTCCAAACAGAACACGTTC
CATGTGGCCCTTATGTATGTTATTTACACGTACGCAAAGGCGAGGGGCGA
GAAGTTTCCTTGTTTGTTCACATCTGGAATCGAGAGAACAAGCCGTTGAA
GAACGACGCGCGCCACGAGATCGTGCGCGTCAAGTGTCGGGCCACAGAAG
GAAACTGTACGTGCGATAGTTCGAAGCAATGGAGTGATTCGTCGCATGGG
TTTTTGGAGAACTTGAGATTTGAAGGCAAGCTGGAGCGATACCCGGGGCT
GGGATGGAGCCAGTTTTTGGAGGAGAAGCGACTGGACGAATGGCGTCATG
CGCACGGAGAGAATTGTGGTTTGGCTATTACCACGGTTCTACAGTTTGTG
AATGCAAAACGACAGTTTGAGGGACCGGCTAGACGGAGCGCTTCTAGAAC
GCTTAGTCCTGGGCGTTTGCAAACGCCTATACAAAAGAAGCGCAGTGGCA
GCAGGATGAAACTGCGTGAATCGAGATAG

Coding sequence (CDS) from alignment at tig00000059_pilon:319154..320932-

>Ggra3480.t1 ID=Ggra3480.t1|Name=Ggra3480.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1779bp|location=Sequence derived from alignment at tig00000059_pilon:319154..320932- (Gracilaria gracilis GNS1m male)
ATGACCACCACCGCGTCCGAAGCGCCGCCATTGCCGCCCACCAAGCCCAA
GCGCGAGAATCTCATCCCGTCGCCCACCAAGCCCACAACGCTTCCGTCCC
CGACCAAGACCGTATGGCCCGCGCCCCCTCCGTCCACCCCCGTGGGCAAC
TGGGTTCTGGATCAGCACTCGTTCGCCCCGAAACGCGATTATTTCATCTC
GTACTGTGCCGGCCTGTCTCGTCGGAGAATCACCGACAATCTCATGTGGT
TTAGGTTTCCCAACGTTACCGATGTCAGCAGACAACAGGTCGCCGTGCAT
TACTCAAGATTGGCTTGGGTTGGCGGCCCGCTTGCGGAGCTTGTTGCCTC
TCCCGCTGCGAACAAATCCGATGCCGATGGCGCGGTTGGCAACGATGTGC
CCATGGCGGATGGCGCTGCTGCTGATGATGATGATGCTCACGCTGAGAAG
AACGACACCGAAGAGCGCACCATAGGCGATGCCGACGCGCATGATTCGGT
CAAGAAACCGAGTGCTGAGCTCCCTGAAAAAAAAGTGTCGGTTGACGAGG
ATCCTGATCACCCTTATCGCCGCCCAGATCCATACGATCTTTCCGAACAT
GATACTCCGCGCACTTTTGCGATCGTCATCAAATTCCTTTACTGCGAAGA
GATTCGATTCAACTATCTCACGTTTGATGAATTGGTTTCACTTGCTACCA
CCGCCCATCGATGGAACCTTACAGATTTGTATCACGCCACGTTTGCATAC
GTGATGGACCAGGACTTGTTGGCTGGTGGTTTGGGCATCCGAACATTTCT
TCCGCTGGTGGCGCATGAGGAGACGCCAGAACCTTTTCGACGATACTTTT
GCATCGCTGTGGGGCATCATTTCGATGTACTCTATCCGCGTCTTCGGGCT
GTGAGGGAAGCAAACCCGACCAGCACGCCTGTGTTATGGAAGACTATATT
CAACCAAAAGATGATGAGCCATGTTTTGCATTGCATTTCATTGTATTCGC
CTGGAGAGTATGATGAATATCTTCTTGATATAATCCTGAGATACTATGAA
CGGCAAAGTGATGCTACGGATGATCAATTGTCGGGTATGCTCAGCCAACT
ATCGTGGGATGACATTGATGTGGCTGGTGTGTTTGGCAACGAGGGTGCGA
GCAGATCGTGGAGCTCACGAGCGGTTCGTCTGGCCGCGCTTGCTTCGTAT
GCGCCGCAAACCGCCGCGCTGGAGGTTCGTATTCCATGGAACATTCCATT
GCAACGTCTGCTCAAGCAGCAGGTGTGGAGTTTCCAAACAGAACACGTTC
CATGTGGCCCTTATGTATGTTATTTACACGTACGCAAAGGCGAGGGGCGA
GAAGTTTCCTTGTTTGTTCACATCTGGAATCGAGAGAACAAGCCGTTGAA
GAACGACGCGCGCCACGAGATCGTGCGCGTCAAGTGTCGGGCCACAGAAG
GAAACTGTACGTGCGATAGTTCGAAGCAATGGAGTGATTCGTCGCATGGG
TTTTTGGAGAACTTGAGATTTGAAGGCAAGCTGGAGCGATACCCGGGGCT
GGGATGGAGCCAGTTTTTGGAGGAGAAGCGACTGGACGAATGGCGTCATG
CGCACGGAGAGAATTGTGGTTTGGCTATTACCACGGTTCTACAGTTTGTG
AATGCAAAACGACAGTTTGAGGGACCGGCTAGACGGAGCGCTTCTAGAAC
GCTTAGTCCTGGGCGTTTGCAAACGCCTATACAAAAGAAGCGCAGTGGCA
GCAGGATGAAACTGCGTGAATCGAGATAG