Ggra348.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra348.t1
Unique NameGgra348.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:86177..87166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra348Ggra348Gracilaria gracilis GNS1m malegenetig00000950_pilon 86177..87166 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra348.t1.start1Ggra348.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 86177..86179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra348.t1.CDS1Ggra348.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 86177..87166 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra348.t1.exon1Ggra348.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 86177..87166 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra348.t1.stop1Ggra348.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 87164..87166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra348.t1Ggra348.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 86177..87166 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra348.t1 ID=Ggra348.t1|Name=Ggra348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp
MSWFSGMFRDEQRASRLRPSSNSSNDESAFQPSEESLRIFDELKNEQDNK
QSDLGFRESKPYSFGTSQSVGKKTIRPGSEPNDSLLPPRTSKPPTGVQGR
KKYFADLDFGNCRRDTVDLLPSDERSGLPLPRFRPSQESLRIFWNLTDGV
QRKRVGRLSRKRKSSNKRFDPLQTRRDRSEMLGPTTNGTRLYRNLATPAQ
PAGPLPTEAVEWAMKVKAFQKTLRNDAPSDFSKSKQEEIPPQLRSHFPSV
ASGNVIAWEADEQAIKCLRRELHLKHSSPKKNGLFNSVQKVGEAIANRLG
ALVHTLWSRVEGVERSFLSFFLKTLPRDR*
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spliced messenger RNA

>Ggra348.t1 ID=Ggra348.t1|Name=Ggra348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000950_pilon:86177..87166+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTGGTTCTCTGGTATGTTTCGTGACGAGCAAAGAGCTTCCAGACT
TCGCCCTTCATCAAACAGCAGCAACGACGAGAGCGCCTTTCAGCCAAGCG
AGGAGAGCTTGCGAATTTTTGACGAGCTGAAGAACGAACAGGACAACAAG
CAGTCAGATTTGGGGTTTCGGGAATCAAAGCCTTATTCATTCGGTACATC
TCAATCTGTCGGGAAAAAGACCATAAGACCAGGATCTGAACCGAATGATT
CTTTGCTTCCACCGCGAACGAGCAAACCACCAACTGGAGTTCAAGGGCGT
AAGAAGTATTTTGCAGATCTGGACTTTGGGAACTGTCGGCGGGATACTGT
TGACCTGCTTCCTTCTGACGAAAGGTCCGGACTTCCTCTGCCTCGGTTCA
GACCGTCACAGGAGAGTCTCCGAATTTTTTGGAATTTGACAGATGGCGTC
CAGCGGAAGCGAGTTGGGCGTCTCAGTCGCAAAAGGAAGAGTAGCAACAA
ACGTTTCGACCCGCTCCAAACGAGAAGGGACCGTAGTGAAATGCTTGGTC
CTACCACCAATGGTACTCGCTTGTATCGCAACTTAGCGACGCCCGCACAA
CCTGCCGGGCCGCTGCCAACTGAGGCAGTGGAGTGGGCTATGAAGGTGAA
GGCATTTCAGAAAACCCTTCGGAACGACGCGCCGAGCGACTTCTCAAAGA
GCAAGCAGGAGGAAATCCCACCCCAGCTCCGGAGCCACTTTCCAAGCGTG
GCATCTGGAAACGTTATCGCGTGGGAAGCTGACGAGCAGGCCATTAAATG
TTTGCGAAGAGAACTGCATTTGAAGCACAGTTCTCCCAAGAAGAATGGTT
TGTTCAACTCGGTTCAGAAAGTCGGTGAGGCGATTGCTAATCGTTTAGGG
GCATTAGTGCATACACTTTGGAGCAGAGTGGAGGGGGTGGAAAGGTCGTT
TCTGTCGTTCTTTTTGAAAACTCTACCGCGCGACCGGTAG
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protein sequence of Ggra348.t1

>Ggra348.t1 ID=Ggra348.t1|Name=Ggra348.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=330bp
MSWFSGMFRDEQRASRLRPSSNSSNDESAFQPSEESLRIFDELKNEQDNK
QSDLGFRESKPYSFGTSQSVGKKTIRPGSEPNDSLLPPRTSKPPTGVQGR
KKYFADLDFGNCRRDTVDLLPSDERSGLPLPRFRPSQESLRIFWNLTDGV
QRKRVGRLSRKRKSSNKRFDPLQTRRDRSEMLGPTTNGTRLYRNLATPAQ
PAGPLPTEAVEWAMKVKAFQKTLRNDAPSDFSKSKQEEIPPQLRSHFPSV
ASGNVIAWEADEQAIKCLRRELHLKHSSPKKNGLFNSVQKVGEAIANRLG
ALVHTLWSRVEGVERSFLSFFLKTLPRDR*
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mRNA from alignment at tig00000950_pilon:86177..87166+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra348.t1 ID=Ggra348.t1|Name=Ggra348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000950_pilon:86177..87166+ (Gracilaria gracilis GNS1m male)
ATGAGCTGGTTCTCTGGTATGTTTCGTGACGAGCAAAGAGCTTCCAGACT
TCGCCCTTCATCAAACAGCAGCAACGACGAGAGCGCCTTTCAGCCAAGCG
AGGAGAGCTTGCGAATTTTTGACGAGCTGAAGAACGAACAGGACAACAAG
CAGTCAGATTTGGGGTTTCGGGAATCAAAGCCTTATTCATTCGGTACATC
TCAATCTGTCGGGAAAAAGACCATAAGACCAGGATCTGAACCGAATGATT
CTTTGCTTCCACCGCGAACGAGCAAACCACCAACTGGAGTTCAAGGGCGT
AAGAAGTATTTTGCAGATCTGGACTTTGGGAACTGTCGGCGGGATACTGT
TGACCTGCTTCCTTCTGACGAAAGGTCCGGACTTCCTCTGCCTCGGTTCA
GACCGTCACAGGAGAGTCTCCGAATTTTTTGGAATTTGACAGATGGCGTC
CAGCGGAAGCGAGTTGGGCGTCTCAGTCGCAAAAGGAAGAGTAGCAACAA
ACGTTTCGACCCGCTCCAAACGAGAAGGGACCGTAGTGAAATGCTTGGTC
CTACCACCAATGGTACTCGCTTGTATCGCAACTTAGCGACGCCCGCACAA
CCTGCCGGGCCGCTGCCAACTGAGGCAGTGGAGTGGGCTATGAAGGTGAA
GGCATTTCAGAAAACCCTTCGGAACGACGCGCCGAGCGACTTCTCAAAGA
GCAAGCAGGAGGAAATCCCACCCCAGCTCCGGAGCCACTTTCCAAGCGTG
GCATCTGGAAACGTTATCGCGTGGGAAGCTGACGAGCAGGCCATTAAATG
TTTGCGAAGAGAACTGCATTTGAAGCACAGTTCTCCCAAGAAGAATGGTT
TGTTCAACTCGGTTCAGAAAGTCGGTGAGGCGATTGCTAATCGTTTAGGG
GCATTAGTGCATACACTTTGGAGCAGAGTGGAGGGGGTGGAAAGGTCGTT
TCTGTCGTTCTTTTTGAAAACTCTACCGCGCGACCGGTAG
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Coding sequence (CDS) from alignment at tig00000950_pilon:86177..87166+

>Ggra348.t1 ID=Ggra348.t1|Name=Ggra348.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00000950_pilon:86177..87166+ (Gracilaria gracilis GNS1m male)
ATGAGCTGGTTCTCTGGTATGTTTCGTGACGAGCAAAGAGCTTCCAGACT
TCGCCCTTCATCAAACAGCAGCAACGACGAGAGCGCCTTTCAGCCAAGCG
AGGAGAGCTTGCGAATTTTTGACGAGCTGAAGAACGAACAGGACAACAAG
CAGTCAGATTTGGGGTTTCGGGAATCAAAGCCTTATTCATTCGGTACATC
TCAATCTGTCGGGAAAAAGACCATAAGACCAGGATCTGAACCGAATGATT
CTTTGCTTCCACCGCGAACGAGCAAACCACCAACTGGAGTTCAAGGGCGT
AAGAAGTATTTTGCAGATCTGGACTTTGGGAACTGTCGGCGGGATACTGT
TGACCTGCTTCCTTCTGACGAAAGGTCCGGACTTCCTCTGCCTCGGTTCA
GACCGTCACAGGAGAGTCTCCGAATTTTTTGGAATTTGACAGATGGCGTC
CAGCGGAAGCGAGTTGGGCGTCTCAGTCGCAAAAGGAAGAGTAGCAACAA
ACGTTTCGACCCGCTCCAAACGAGAAGGGACCGTAGTGAAATGCTTGGTC
CTACCACCAATGGTACTCGCTTGTATCGCAACTTAGCGACGCCCGCACAA
CCTGCCGGGCCGCTGCCAACTGAGGCAGTGGAGTGGGCTATGAAGGTGAA
GGCATTTCAGAAAACCCTTCGGAACGACGCGCCGAGCGACTTCTCAAAGA
GCAAGCAGGAGGAAATCCCACCCCAGCTCCGGAGCCACTTTCCAAGCGTG
GCATCTGGAAACGTTATCGCGTGGGAAGCTGACGAGCAGGCCATTAAATG
TTTGCGAAGAGAACTGCATTTGAAGCACAGTTCTCCCAAGAAGAATGGTT
TGTTCAACTCGGTTCAGAAAGTCGGTGAGGCGATTGCTAATCGTTTAGGG
GCATTAGTGCATACACTTTGGAGCAGAGTGGAGGGGGTGGAAAGGTCGTT
TCTGTCGTTCTTTTTGAAAACTCTACCGCGCGACCGGTAG
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