Ggra3477.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3477.t1
Unique NameGgra3477.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:306864..307901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3477Ggra3477Gracilaria gracilis GNS1m malegenetig00000059_pilon 306864..307901 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3477.t1.start1Ggra3477.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 306864..306866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3477.t1.CDS1Ggra3477.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 306864..307901 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3477.t1.exon1Ggra3477.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 306864..307901 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3477.t1.stop1Ggra3477.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 307899..307901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3477.t1Ggra3477.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 306864..307901 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3477.t1 ID=Ggra3477.t1|Name=Ggra3477.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=346bp
MKSTITFTIFFALFAPLCLALSLAAPPFPITCAIIRCPARETCVETHTGP
KCVSSPTDPLPPPPPTSCAVVLCAVGHICVQTPGGAQCVPIGGAGTVPPP
PAPAATPTPPADCSQLNCASDEFCIETPAGPECTPDTGCAAVTCLVGSAC
VVTPTGPECQPINPSPAPPTPHPDTCACIQIFDPVCCQLPSGEKRTTGND
CECSGCGSGTVISRGACPPASCAAVDCAPGFSCVIKDAVAQCIEDEAPSC
ICPLNFDPVCCQTPSGFETKSNSCFCNCEPSSRVLRPGECPTIAPPSGPS
DCFCLALYDPVCCKSALGLVSQASNSCRCECTGGTVVQSGCGINH*
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spliced messenger RNA

>Ggra3477.t1 ID=Ggra3477.t1|Name=Ggra3477.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000059_pilon:306864..307901+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCCACCATCACTTTCACAATCTTCTTCGCCTTGTTCGCTCCTCT
GTGTCTGGCTCTCAGCCTGGCAGCGCCGCCGTTCCCGATAACATGCGCCA
TCATTCGCTGCCCCGCCCGTGAGACCTGCGTCGAGACTCACACCGGTCCC
AAATGCGTGTCGAGCCCAACCGATCCATTGCCGCCGCCGCCGCCAACTTC
GTGCGCAGTCGTGCTCTGCGCCGTCGGTCACATCTGCGTGCAGACCCCTG
GCGGAGCGCAATGCGTTCCCATTGGCGGTGCAGGAACGGTACCACCGCCG
CCGGCTCCGGCCGCCACCCCAACACCGCCGGCTGACTGCTCGCAGCTCAA
CTGTGCTTCGGATGAGTTCTGTATCGAGACACCCGCCGGCCCCGAATGTA
CGCCGGATACAGGCTGCGCGGCTGTAACGTGCTTGGTTGGCAGCGCCTGC
GTTGTCACGCCGACTGGTCCGGAGTGTCAACCGATCAACCCGTCACCGGC
GCCTCCAACACCGCACCCAGATACTTGCGCTTGTATCCAGATTTTCGACC
CGGTTTGCTGCCAGTTGCCGAGCGGCGAGAAGAGGACTACTGGCAACGAC
TGTGAATGTTCTGGATGTGGATCTGGAACTGTTATTTCGAGGGGCGCATG
CCCGCCAGCTTCTTGTGCCGCCGTTGACTGTGCGCCTGGCTTCAGCTGCG
TCATCAAAGATGCCGTAGCTCAGTGCATTGAGGACGAGGCTCCTTCTTGC
ATATGTCCTCTCAACTTCGATCCAGTATGCTGTCAGACACCGTCTGGGTT
TGAGACCAAGAGCAACTCTTGCTTCTGTAATTGCGAGCCTTCCAGCAGAG
TCCTCCGTCCCGGAGAGTGTCCTACCATTGCTCCTCCGAGTGGTCCTAGT
GACTGTTTCTGCCTTGCTCTGTATGATCCTGTGTGCTGCAAGAGTGCGCT
TGGCCTGGTGTCACAGGCTTCCAATTCCTGTCGGTGCGAGTGTACTGGAG
GAACTGTTGTTCAATCTGGCTGTGGTATCAATCATTAA
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protein sequence of Ggra3477.t1

>Ggra3477.t1 ID=Ggra3477.t1|Name=Ggra3477.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=346bp
MKSTITFTIFFALFAPLCLALSLAAPPFPITCAIIRCPARETCVETHTGP
KCVSSPTDPLPPPPPTSCAVVLCAVGHICVQTPGGAQCVPIGGAGTVPPP
PAPAATPTPPADCSQLNCASDEFCIETPAGPECTPDTGCAAVTCLVGSAC
VVTPTGPECQPINPSPAPPTPHPDTCACIQIFDPVCCQLPSGEKRTTGND
CECSGCGSGTVISRGACPPASCAAVDCAPGFSCVIKDAVAQCIEDEAPSC
ICPLNFDPVCCQTPSGFETKSNSCFCNCEPSSRVLRPGECPTIAPPSGPS
DCFCLALYDPVCCKSALGLVSQASNSCRCECTGGTVVQSGCGINH*
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mRNA from alignment at tig00000059_pilon:306864..307901+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3477.t1 ID=Ggra3477.t1|Name=Ggra3477.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000059_pilon:306864..307901+ (Gracilaria gracilis GNS1m male)
ATGAAGTCCACCATCACTTTCACAATCTTCTTCGCCTTGTTCGCTCCTCT
GTGTCTGGCTCTCAGCCTGGCAGCGCCGCCGTTCCCGATAACATGCGCCA
TCATTCGCTGCCCCGCCCGTGAGACCTGCGTCGAGACTCACACCGGTCCC
AAATGCGTGTCGAGCCCAACCGATCCATTGCCGCCGCCGCCGCCAACTTC
GTGCGCAGTCGTGCTCTGCGCCGTCGGTCACATCTGCGTGCAGACCCCTG
GCGGAGCGCAATGCGTTCCCATTGGCGGTGCAGGAACGGTACCACCGCCG
CCGGCTCCGGCCGCCACCCCAACACCGCCGGCTGACTGCTCGCAGCTCAA
CTGTGCTTCGGATGAGTTCTGTATCGAGACACCCGCCGGCCCCGAATGTA
CGCCGGATACAGGCTGCGCGGCTGTAACGTGCTTGGTTGGCAGCGCCTGC
GTTGTCACGCCGACTGGTCCGGAGTGTCAACCGATCAACCCGTCACCGGC
GCCTCCAACACCGCACCCAGATACTTGCGCTTGTATCCAGATTTTCGACC
CGGTTTGCTGCCAGTTGCCGAGCGGCGAGAAGAGGACTACTGGCAACGAC
TGTGAATGTTCTGGATGTGGATCTGGAACTGTTATTTCGAGGGGCGCATG
CCCGCCAGCTTCTTGTGCCGCCGTTGACTGTGCGCCTGGCTTCAGCTGCG
TCATCAAAGATGCCGTAGCTCAGTGCATTGAGGACGAGGCTCCTTCTTGC
ATATGTCCTCTCAACTTCGATCCAGTATGCTGTCAGACACCGTCTGGGTT
TGAGACCAAGAGCAACTCTTGCTTCTGTAATTGCGAGCCTTCCAGCAGAG
TCCTCCGTCCCGGAGAGTGTCCTACCATTGCTCCTCCGAGTGGTCCTAGT
GACTGTTTCTGCCTTGCTCTGTATGATCCTGTGTGCTGCAAGAGTGCGCT
TGGCCTGGTGTCACAGGCTTCCAATTCCTGTCGGTGCGAGTGTACTGGAG
GAACTGTTGTTCAATCTGGCTGTGGTATCAATCATTAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:306864..307901+

>Ggra3477.t1 ID=Ggra3477.t1|Name=Ggra3477.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000059_pilon:306864..307901+ (Gracilaria gracilis GNS1m male)
ATGAAGTCCACCATCACTTTCACAATCTTCTTCGCCTTGTTCGCTCCTCT
GTGTCTGGCTCTCAGCCTGGCAGCGCCGCCGTTCCCGATAACATGCGCCA
TCATTCGCTGCCCCGCCCGTGAGACCTGCGTCGAGACTCACACCGGTCCC
AAATGCGTGTCGAGCCCAACCGATCCATTGCCGCCGCCGCCGCCAACTTC
GTGCGCAGTCGTGCTCTGCGCCGTCGGTCACATCTGCGTGCAGACCCCTG
GCGGAGCGCAATGCGTTCCCATTGGCGGTGCAGGAACGGTACCACCGCCG
CCGGCTCCGGCCGCCACCCCAACACCGCCGGCTGACTGCTCGCAGCTCAA
CTGTGCTTCGGATGAGTTCTGTATCGAGACACCCGCCGGCCCCGAATGTA
CGCCGGATACAGGCTGCGCGGCTGTAACGTGCTTGGTTGGCAGCGCCTGC
GTTGTCACGCCGACTGGTCCGGAGTGTCAACCGATCAACCCGTCACCGGC
GCCTCCAACACCGCACCCAGATACTTGCGCTTGTATCCAGATTTTCGACC
CGGTTTGCTGCCAGTTGCCGAGCGGCGAGAAGAGGACTACTGGCAACGAC
TGTGAATGTTCTGGATGTGGATCTGGAACTGTTATTTCGAGGGGCGCATG
CCCGCCAGCTTCTTGTGCCGCCGTTGACTGTGCGCCTGGCTTCAGCTGCG
TCATCAAAGATGCCGTAGCTCAGTGCATTGAGGACGAGGCTCCTTCTTGC
ATATGTCCTCTCAACTTCGATCCAGTATGCTGTCAGACACCGTCTGGGTT
TGAGACCAAGAGCAACTCTTGCTTCTGTAATTGCGAGCCTTCCAGCAGAG
TCCTCCGTCCCGGAGAGTGTCCTACCATTGCTCCTCCGAGTGGTCCTAGT
GACTGTTTCTGCCTTGCTCTGTATGATCCTGTGTGCTGCAAGAGTGCGCT
TGGCCTGGTGTCACAGGCTTCCAATTCCTGTCGGTGCGAGTGTACTGGAG
GAACTGTTGTTCAATCTGGCTGTGGTATCAATCATTAA
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