Ggra3475.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3475.t1
Unique NameGgra3475.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length653
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:296412..298468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709381.1
Max annot lvl2759|Eukaryota
KEGG koko:K04512,ko:K05747
KEGG Pathwayko04062,ko04144,ko04310,ko04520,ko04530,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,ko05231,map04062,map04144,map04310,map04520,map04530,map04666,map04810,map05100,map05130,map05131,map05132,map05231
Evalue6.72e-115
EggNOG OGs2EUZ9@1|root,2SX1S@2759|Eukaryota
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3475Ggra3475Gracilaria gracilis GNS1m malegenetig00000059_pilon 296412..298468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3475.t1Ggra3475.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 296412..298468 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3475.t1.stop1Ggra3475.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 296412..296414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3475.t1.CDS1Ggra3475.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 296412..298279 -
Ggra3475.t1.CDS2Ggra3475.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 298378..298468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3475.t1.exon1Ggra3475.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 296412..298279 -
Ggra3475.t1.exon2Ggra3475.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 298378..298468 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3475.t1.intron1Ggra3475.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 298280..298377 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3475.t1.start1Ggra3475.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 298466..298468 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3475.t1 ID=Ggra3475.t1|Name=Ggra3475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=653bp
MSRKYDARSTLEDRLGPDVLVRLQSMAHEFVRFERGQFGFYIDPARYAVK
QRQVGPLGRGRRRKVVAGVDKDGNIITAWIGVDSRAKGARTQGGEMVTIP
DEYAEGALGGGGGGGYGPGGGGGGGGYGPGGGGGGGYGPGGGGGGGPGGG
GPGGAGPGGAGPGGPGRGGGNAPGAAGAVAAAAAARKNQAANGPPPRAPG
APGVPGAPGAPAVPKAPIGQVSGKDNAARGRQKKPLHWAKVPMNLVNNSF
WPTLDEGNVRLDEEEIDDLFGVDVVERFKIAAAEVKPEVLPHKRKHNVNI
LLANLKMSAEHIKDVVRVPTYKELEAGTLQALLLVCPTQEEEMLLAQNAN
IRAEVDKTDAFMMDLADLKGLRGKILCALAAKTFNDEAVDVIRNMDTFAM
IPVEVMNSEKLGRILEAVLALGNFLNSGTGRGGAHGFKMEALAMLSTVKD
AKGNTLLDYLIFMLERDNPGLLPLDDMPTLARSKELSLEAIGEEVQALLE
SVTNVSEQIKQIGDDQTLAAFKAEMEVFAEEATKVREEIVSLRGLMMQKL
QSMMLHFGERNKMSRGRQEDLLRMLRDFSDDIVSGLARAKERNERARKQA
AKNDAKKAGNVVRGGAAIGNGGEIGTGDVAHGLAGANVGIEVGGGDGGGG
EL*
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spliced messenger RNA

>Ggra3475.t1 ID=Ggra3475.t1|Name=Ggra3475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1959bp|location=Sequence derived from alignment at tig00000059_pilon:296412..298468- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCAAGTATGATGCGCGTTCCACGCTCGAGGATCGTCTCGGCCC
CGACGTGCTCGTCAGACTACAGAGCATGGCGCATGAATTCGTGCGTTTTG
AACGAGGTCAATTCGGCTTCTACATCGATCCGGCTCGCTACGCCGTCAAG
CAACGGCAGGTGGGTCCGCTAGGTCGTGGCCGTCGCCGCAAGGTTGTGGC
GGGCGTCGACAAGGATGGCAACATCATCACCGCCTGGATCGGCGTCGATT
CCCGCGCAAAAGGCGCCCGCACGCAGGGCGGTGAAATGGTCACCATCCCC
GACGAGTACGCAGAAGGCGCGCTCGGCGGCGGTGGCGGCGGAGGCTACGG
ACCCGGCGGCGGAGGCGGAGGCGGTGGCTACGGACCTGGTGGTGGTGGTG
GTGGTGGATATGGTCCTGGCGGCGGCGGCGGCGGCGGACCTGGTGGTGGT
GGGCCTGGCGGTGCTGGGCCTGGCGGTGCTGGACCTGGTGGCCCTGGTCG
CGGTGGTGGAAATGCGCCGGGTGCCGCGGGAGCCGTGGCGGCTGCCGCCG
CTGCGAGGAAGAATCAGGCCGCGAATGGACCTCCGCCGCGAGCGCCGGGT
GCGCCGGGTGTTCCTGGAGCGCCAGGAGCGCCGGCGGTGCCGAAGGCACC
TATCGGACAAGTTTCTGGCAAGGACAATGCTGCGAGAGGACGACAGAAGA
AACCGCTTCATTGGGCGAAGGTGCCCATGAACTTGGTCAACAATTCGTTC
TGGCCCACTTTGGATGAGGGCAATGTGCGATTGGATGAAGAGGAGATTGA
TGATCTATTTGGCGTGGACGTTGTGGAGAGATTCAAGATTGCTGCCGCTG
AGGTTAAGCCCGAAGTACTTCCACACAAGCGTAAGCATAATGTCAATATC
TTGTTGGCCAACCTCAAGATGAGTGCGGAGCATATTAAGGATGTTGTCAG
AGTGCCTACGTACAAGGAGCTGGAGGCTGGTACTCTGCAAGCTTTGTTGC
TTGTTTGTCCAACGCAGGAAGAAGAGATGCTTCTTGCTCAGAACGCCAAC
ATTCGCGCCGAGGTTGATAAGACTGACGCATTTATGATGGATCTTGCAGA
CTTGAAGGGCTTGCGTGGAAAGATTCTTTGCGCGCTGGCAGCGAAAACGT
TTAACGATGAAGCTGTCGATGTCATCCGCAACATGGATACCTTTGCCATG
ATTCCTGTGGAAGTTATGAACTCCGAGAAGCTTGGGCGTATCTTGGAGGC
TGTGCTAGCGTTGGGTAACTTCCTCAATTCCGGAACTGGTCGGGGCGGCG
CTCATGGATTCAAAATGGAGGCCTTGGCTATGTTGAGTACAGTGAAGGAT
GCCAAGGGTAATACCTTGCTGGATTACCTTATCTTCATGTTGGAGAGGGA
TAACCCTGGGCTATTGCCGTTGGATGACATGCCCACCTTGGCGAGGTCAA
AGGAACTTTCTCTCGAAGCTATTGGAGAGGAGGTGCAGGCATTGTTAGAA
TCTGTGACCAATGTTTCAGAGCAGATCAAGCAGATTGGCGATGACCAGAC
GCTTGCGGCATTCAAGGCGGAGATGGAGGTGTTCGCTGAGGAGGCGACCA
AGGTTCGAGAAGAGATTGTGTCTTTGAGAGGTCTCATGATGCAAAAGTTA
CAGAGCATGATGCTGCACTTTGGTGAGAGGAACAAGATGTCAAGAGGACG
ACAGGAAGATCTCTTGAGGATGTTGAGAGATTTCTCAGATGATATTGTTT
CGGGTCTGGCAAGAGCAAAGGAGAGGAATGAACGCGCGAGAAAGCAAGCG
GCCAAGAACGATGCGAAGAAGGCGGGTAACGTTGTTCGTGGGGGGGCTGC
TATCGGCAATGGTGGGGAGATTGGAACGGGTGATGTTGCGCATGGATTGG
CCGGTGCGAACGTGGGTATTGAGGTTGGCGGCGGAGATGGTGGCGGCGGT
GAGCTGTGA
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protein sequence of Ggra3475.t1

>Ggra3475.t1 ID=Ggra3475.t1|Name=Ggra3475.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=653bp
MSRKYDARSTLEDRLGPDVLVRLQSMAHEFVRFERGQFGFYIDPARYAVK
QRQVGPLGRGRRRKVVAGVDKDGNIITAWIGVDSRAKGARTQGGEMVTIP
DEYAEGALGGGGGGGYGPGGGGGGGGYGPGGGGGGGYGPGGGGGGGPGGG
GPGGAGPGGAGPGGPGRGGGNAPGAAGAVAAAAAARKNQAANGPPPRAPG
APGVPGAPGAPAVPKAPIGQVSGKDNAARGRQKKPLHWAKVPMNLVNNSF
WPTLDEGNVRLDEEEIDDLFGVDVVERFKIAAAEVKPEVLPHKRKHNVNI
LLANLKMSAEHIKDVVRVPTYKELEAGTLQALLLVCPTQEEEMLLAQNAN
IRAEVDKTDAFMMDLADLKGLRGKILCALAAKTFNDEAVDVIRNMDTFAM
IPVEVMNSEKLGRILEAVLALGNFLNSGTGRGGAHGFKMEALAMLSTVKD
AKGNTLLDYLIFMLERDNPGLLPLDDMPTLARSKELSLEAIGEEVQALLE
SVTNVSEQIKQIGDDQTLAAFKAEMEVFAEEATKVREEIVSLRGLMMQKL
QSMMLHFGERNKMSRGRQEDLLRMLRDFSDDIVSGLARAKERNERARKQA
AKNDAKKAGNVVRGGAAIGNGGEIGTGDVAHGLAGANVGIEVGGGDGGGG
EL*
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mRNA from alignment at tig00000059_pilon:296412..298468-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3475.t1 ID=Ggra3475.t1|Name=Ggra3475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2057bp|location=Sequence derived from alignment at tig00000059_pilon:296412..298468- (Gracilaria gracilis GNS1m male)
ATGTCGCGCAAGTATGATGCGCGTTCCACGCTCGAGGATCGTCTCGGCCC
CGACGTGCTCGTCAGACTACAGAGCATGGCGCATGAATTCGGTACGTCCT
TTCTTCCCTCCGCCGTGCATAACGCCCGCGTCTAAGCGTGCCTACTGACC
CGTGAATCACGCTCAATTGCGCCTGTCACGCGCGCGCAGTGCGTTTTGAA
CGAGGTCAATTCGGCTTCTACATCGATCCGGCTCGCTACGCCGTCAAGCA
ACGGCAGGTGGGTCCGCTAGGTCGTGGCCGTCGCCGCAAGGTTGTGGCGG
GCGTCGACAAGGATGGCAACATCATCACCGCCTGGATCGGCGTCGATTCC
CGCGCAAAAGGCGCCCGCACGCAGGGCGGTGAAATGGTCACCATCCCCGA
CGAGTACGCAGAAGGCGCGCTCGGCGGCGGTGGCGGCGGAGGCTACGGAC
CCGGCGGCGGAGGCGGAGGCGGTGGCTACGGACCTGGTGGTGGTGGTGGT
GGTGGATATGGTCCTGGCGGCGGCGGCGGCGGCGGACCTGGTGGTGGTGG
GCCTGGCGGTGCTGGGCCTGGCGGTGCTGGACCTGGTGGCCCTGGTCGCG
GTGGTGGAAATGCGCCGGGTGCCGCGGGAGCCGTGGCGGCTGCCGCCGCT
GCGAGGAAGAATCAGGCCGCGAATGGACCTCCGCCGCGAGCGCCGGGTGC
GCCGGGTGTTCCTGGAGCGCCAGGAGCGCCGGCGGTGCCGAAGGCACCTA
TCGGACAAGTTTCTGGCAAGGACAATGCTGCGAGAGGACGACAGAAGAAA
CCGCTTCATTGGGCGAAGGTGCCCATGAACTTGGTCAACAATTCGTTCTG
GCCCACTTTGGATGAGGGCAATGTGCGATTGGATGAAGAGGAGATTGATG
ATCTATTTGGCGTGGACGTTGTGGAGAGATTCAAGATTGCTGCCGCTGAG
GTTAAGCCCGAAGTACTTCCACACAAGCGTAAGCATAATGTCAATATCTT
GTTGGCCAACCTCAAGATGAGTGCGGAGCATATTAAGGATGTTGTCAGAG
TGCCTACGTACAAGGAGCTGGAGGCTGGTACTCTGCAAGCTTTGTTGCTT
GTTTGTCCAACGCAGGAAGAAGAGATGCTTCTTGCTCAGAACGCCAACAT
TCGCGCCGAGGTTGATAAGACTGACGCATTTATGATGGATCTTGCAGACT
TGAAGGGCTTGCGTGGAAAGATTCTTTGCGCGCTGGCAGCGAAAACGTTT
AACGATGAAGCTGTCGATGTCATCCGCAACATGGATACCTTTGCCATGAT
TCCTGTGGAAGTTATGAACTCCGAGAAGCTTGGGCGTATCTTGGAGGCTG
TGCTAGCGTTGGGTAACTTCCTCAATTCCGGAACTGGTCGGGGCGGCGCT
CATGGATTCAAAATGGAGGCCTTGGCTATGTTGAGTACAGTGAAGGATGC
CAAGGGTAATACCTTGCTGGATTACCTTATCTTCATGTTGGAGAGGGATA
ACCCTGGGCTATTGCCGTTGGATGACATGCCCACCTTGGCGAGGTCAAAG
GAACTTTCTCTCGAAGCTATTGGAGAGGAGGTGCAGGCATTGTTAGAATC
TGTGACCAATGTTTCAGAGCAGATCAAGCAGATTGGCGATGACCAGACGC
TTGCGGCATTCAAGGCGGAGATGGAGGTGTTCGCTGAGGAGGCGACCAAG
GTTCGAGAAGAGATTGTGTCTTTGAGAGGTCTCATGATGCAAAAGTTACA
GAGCATGATGCTGCACTTTGGTGAGAGGAACAAGATGTCAAGAGGACGAC
AGGAAGATCTCTTGAGGATGTTGAGAGATTTCTCAGATGATATTGTTTCG
GGTCTGGCAAGAGCAAAGGAGAGGAATGAACGCGCGAGAAAGCAAGCGGC
CAAGAACGATGCGAAGAAGGCGGGTAACGTTGTTCGTGGGGGGGCTGCTA
TCGGCAATGGTGGGGAGATTGGAACGGGTGATGTTGCGCATGGATTGGCC
GGTGCGAACGTGGGTATTGAGGTTGGCGGCGGAGATGGTGGCGGCGGTGA
GCTGTGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:296412..298468-

>Ggra3475.t1 ID=Ggra3475.t1|Name=Ggra3475.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1959bp|location=Sequence derived from alignment at tig00000059_pilon:296412..298468- (Gracilaria gracilis GNS1m male)
ATGTCGCGCAAGTATGATGCGCGTTCCACGCTCGAGGATCGTCTCGGCCC
CGACGTGCTCGTCAGACTACAGAGCATGGCGCATGAATTCGTGCGTTTTG
AACGAGGTCAATTCGGCTTCTACATCGATCCGGCTCGCTACGCCGTCAAG
CAACGGCAGGTGGGTCCGCTAGGTCGTGGCCGTCGCCGCAAGGTTGTGGC
GGGCGTCGACAAGGATGGCAACATCATCACCGCCTGGATCGGCGTCGATT
CCCGCGCAAAAGGCGCCCGCACGCAGGGCGGTGAAATGGTCACCATCCCC
GACGAGTACGCAGAAGGCGCGCTCGGCGGCGGTGGCGGCGGAGGCTACGG
ACCCGGCGGCGGAGGCGGAGGCGGTGGCTACGGACCTGGTGGTGGTGGTG
GTGGTGGATATGGTCCTGGCGGCGGCGGCGGCGGCGGACCTGGTGGTGGT
GGGCCTGGCGGTGCTGGGCCTGGCGGTGCTGGACCTGGTGGCCCTGGTCG
CGGTGGTGGAAATGCGCCGGGTGCCGCGGGAGCCGTGGCGGCTGCCGCCG
CTGCGAGGAAGAATCAGGCCGCGAATGGACCTCCGCCGCGAGCGCCGGGT
GCGCCGGGTGTTCCTGGAGCGCCAGGAGCGCCGGCGGTGCCGAAGGCACC
TATCGGACAAGTTTCTGGCAAGGACAATGCTGCGAGAGGACGACAGAAGA
AACCGCTTCATTGGGCGAAGGTGCCCATGAACTTGGTCAACAATTCGTTC
TGGCCCACTTTGGATGAGGGCAATGTGCGATTGGATGAAGAGGAGATTGA
TGATCTATTTGGCGTGGACGTTGTGGAGAGATTCAAGATTGCTGCCGCTG
AGGTTAAGCCCGAAGTACTTCCACACAAGCGTAAGCATAATGTCAATATC
TTGTTGGCCAACCTCAAGATGAGTGCGGAGCATATTAAGGATGTTGTCAG
AGTGCCTACGTACAAGGAGCTGGAGGCTGGTACTCTGCAAGCTTTGTTGC
TTGTTTGTCCAACGCAGGAAGAAGAGATGCTTCTTGCTCAGAACGCCAAC
ATTCGCGCCGAGGTTGATAAGACTGACGCATTTATGATGGATCTTGCAGA
CTTGAAGGGCTTGCGTGGAAAGATTCTTTGCGCGCTGGCAGCGAAAACGT
TTAACGATGAAGCTGTCGATGTCATCCGCAACATGGATACCTTTGCCATG
ATTCCTGTGGAAGTTATGAACTCCGAGAAGCTTGGGCGTATCTTGGAGGC
TGTGCTAGCGTTGGGTAACTTCCTCAATTCCGGAACTGGTCGGGGCGGCG
CTCATGGATTCAAAATGGAGGCCTTGGCTATGTTGAGTACAGTGAAGGAT
GCCAAGGGTAATACCTTGCTGGATTACCTTATCTTCATGTTGGAGAGGGA
TAACCCTGGGCTATTGCCGTTGGATGACATGCCCACCTTGGCGAGGTCAA
AGGAACTTTCTCTCGAAGCTATTGGAGAGGAGGTGCAGGCATTGTTAGAA
TCTGTGACCAATGTTTCAGAGCAGATCAAGCAGATTGGCGATGACCAGAC
GCTTGCGGCATTCAAGGCGGAGATGGAGGTGTTCGCTGAGGAGGCGACCA
AGGTTCGAGAAGAGATTGTGTCTTTGAGAGGTCTCATGATGCAAAAGTTA
CAGAGCATGATGCTGCACTTTGGTGAGAGGAACAAGATGTCAAGAGGACG
ACAGGAAGATCTCTTGAGGATGTTGAGAGATTTCTCAGATGATATTGTTT
CGGGTCTGGCAAGAGCAAAGGAGAGGAATGAACGCGCGAGAAAGCAAGCG
GCCAAGAACGATGCGAAGAAGGCGGGTAACGTTGTTCGTGGGGGGGCTGC
TATCGGCAATGGTGGGGAGATTGGAACGGGTGATGTTGCGCATGGATTGG
CCGGTGCGAACGTGGGTATTGAGGTTGGCGGCGGAGATGGTGGCGGCGGT
GAGCTGTGA
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