Ggra3469.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3469.t1
Unique Name	Ggra3469.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	562

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:276609..278294 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP08851
PFAMs	Glyco_trans_1_4
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC00005,RC00059
KEGG ko	ko:K09480
KEGG Reaction	R04469
KEGG Pathway	ko00561,ko01100,map00561,map01100
Evalue	7.95e-109
EggNOG OGs	2CMFA@1\|root,2QQ73@2759\|Eukaryota,37MAG@33090\|Viridiplantae,34J3H@3041\|Chlorophyta
EC	2.4.1.241
Description	Glycosyltransferase family 4 protein
COG category	S
CAZy	GT4
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3469	Ggra3469	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 276609..278294 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3469.t1.start1	Ggra3469.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 276609..276611 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3469.t1.CDS1	Ggra3469.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 276609..278294 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3469.t1.exon1	Ggra3469.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 276609..278294 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3469.t1.stop1	Ggra3469.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 278292..278294 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3469.t1	Ggra3469.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 276609..278294 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:276609..278294+
coding sequence from alignment at tig00000059_pilon:276609..278294+

mRNA sequence

>Ggra3469.t1 ID=Ggra3469.t1|Name=Ggra3469.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=562bp
MTPLLASLLTALVTSSRPSFNAQGERPRIVPGPSSPRDAERPENNAKQHP
VVAMAAAYALFLIGRENAVAKRLKRGRVPRQLSVSIDLFGEEHVEASLLT
GGPTRPAAARREERRVLREEAELTATSDMRTAKRDIVIVTTAAIPWMTGT
AVNPALRALYLAKDGHHVTLVVPWVPTEEQQLEVFFRGSPTFSTQQEQRD
YIQQWGYKQVQAHFEVLFYDGVHAPHFGSILPVGAVTDIIEAHVANKDIC
ILEEPEHLTWHHSGKVWTQLFKYVVGIIHTNYIEYVSSVDYGKAVALLLL
NMWVSRSYCHRIVKLSDAVQLFPNSVTCNVHGVRDKFIDIGRKRSGSFPR
GAYFMGKVLWAKGYEELINCMIAHYKATNEPLPIDFYGAGPDVPEVREKV
DTLPALSAVHFDARVADPASEWLQGYKVFVNASRSDVVCTATAEALAMGK
LVVCLEHPSNQFFATFPNCRTYRNTEEFSKVLLDALQSEPLPLSEQDAYR
FTWEAATERLYDAMRMPLHKSKPSKVGAALANAHTTLSKIYPQPGKKLQT
VRSRESLQART*

spliced messenger RNA

>Ggra3469.t1 ID=Ggra3469.t1|Name=Ggra3469.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000059_pilon:276609..278294+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCACTTTTGGCTTCGCTCCTTACGGCTCTCGTCACATCGTCCCG
TCCTTCCTTTAACGCGCAAGGAGAACGTCCGAGAATTGTGCCAGGACCTT
CTTCTCCCCGCGATGCAGAGCGTCCTGAAAATAATGCCAAGCAACATCCT
GTTGTTGCGATGGCGGCTGCCTATGCTCTGTTTCTCATTGGCAGGGAAAA
TGCGGTGGCGAAACGATTGAAGAGGGGGAGGGTGCCGAGACAGTTATCGG
TTTCCATTGACCTTTTTGGCGAGGAGCATGTCGAGGCTAGCTTGCTGACA
GGCGGTCCAACTAGGCCTGCTGCAGCGCGGAGGGAAGAACGACGCGTTCT
CAGGGAAGAGGCTGAATTAACCGCCACGTCCGATATGCGCACTGCTAAGA
GAGATATCGTTATTGTCACAACAGCAGCAATTCCATGGATGACGGGCACC
GCGGTAAACCCTGCCTTGCGTGCGTTATACTTAGCCAAGGACGGTCATCA
TGTCACGTTAGTTGTACCGTGGGTTCCGACTGAGGAACAGCAACTTGAAG
TTTTCTTTAGAGGCAGTCCTACTTTCTCTACGCAGCAGGAGCAACGTGAT
TATATACAACAATGGGGGTATAAGCAAGTGCAAGCTCACTTTGAGGTTCT
GTTTTATGATGGAGTACATGCACCTCATTTTGGTTCCATTCTACCAGTCG
GAGCCGTTACTGACATTATAGAAGCTCATGTCGCTAACAAGGACATATGT
ATTTTGGAAGAGCCAGAACATCTCACGTGGCATCATTCTGGGAAAGTATG
GACTCAGTTGTTTAAGTATGTTGTTGGCATTATACACACCAATTACATCG
AGTATGTGAGCAGTGTAGATTATGGAAAGGCTGTTGCGCTTTTGCTCCTG
AACATGTGGGTTTCCCGTAGTTACTGTCACCGAATCGTAAAGCTCTCCGA
CGCCGTGCAACTGTTCCCCAATTCCGTTACATGCAATGTGCATGGCGTTC
GGGATAAATTCATCGATATCGGAAGAAAGAGGAGTGGATCGTTTCCTCGT
GGTGCTTACTTCATGGGTAAAGTTCTGTGGGCGAAAGGCTATGAAGAACT
CATTAATTGTATGATTGCACACTACAAGGCCACCAATGAACCGCTTCCAA
TTGACTTTTACGGTGCTGGACCCGATGTTCCCGAAGTTCGTGAAAAAGTT
GATACACTCCCCGCTCTTTCTGCAGTCCACTTCGATGCACGGGTTGCGGA
CCCTGCAAGCGAATGGTTACAAGGCTATAAAGTGTTTGTCAATGCTTCTA
GAAGTGATGTGGTTTGCACAGCTACTGCTGAGGCGTTAGCGATGGGAAAG
CTTGTTGTGTGCCTGGAACATCCAAGCAACCAGTTCTTTGCTACCTTTCC
GAACTGCAGAACTTATCGCAACACGGAAGAGTTTTCTAAAGTTTTGCTCG
ATGCGCTGCAAAGCGAACCGCTTCCTCTCTCAGAGCAGGATGCCTACAGG
TTTACTTGGGAGGCCGCTACGGAGAGACTGTATGATGCGATGCGAATGCC
ATTGCACAAGAGTAAGCCCAGTAAGGTCGGAGCCGCTTTAGCTAATGCCC
ACACTACTCTCTCGAAGATTTACCCTCAACCTGGAAAGAAGCTTCAGACA
GTGAGATCAAGGGAGTCTCTTCAAGCACGTACATAA

protein sequence of Ggra3469.t1

>Ggra3469.t1 ID=Ggra3469.t1|Name=Ggra3469.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=562bp
MTPLLASLLTALVTSSRPSFNAQGERPRIVPGPSSPRDAERPENNAKQHP
VVAMAAAYALFLIGRENAVAKRLKRGRVPRQLSVSIDLFGEEHVEASLLT
GGPTRPAAARREERRVLREEAELTATSDMRTAKRDIVIVTTAAIPWMTGT
AVNPALRALYLAKDGHHVTLVVPWVPTEEQQLEVFFRGSPTFSTQQEQRD
YIQQWGYKQVQAHFEVLFYDGVHAPHFGSILPVGAVTDIIEAHVANKDIC
ILEEPEHLTWHHSGKVWTQLFKYVVGIIHTNYIEYVSSVDYGKAVALLLL
NMWVSRSYCHRIVKLSDAVQLFPNSVTCNVHGVRDKFIDIGRKRSGSFPR
GAYFMGKVLWAKGYEELINCMIAHYKATNEPLPIDFYGAGPDVPEVREKV
DTLPALSAVHFDARVADPASEWLQGYKVFVNASRSDVVCTATAEALAMGK
LVVCLEHPSNQFFATFPNCRTYRNTEEFSKVLLDALQSEPLPLSEQDAYR
FTWEAATERLYDAMRMPLHKSKPSKVGAALANAHTTLSKIYPQPGKKLQT
VRSRESLQART*

mRNA from alignment at tig00000059_pilon:276609..278294+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3469.t1 ID=Ggra3469.t1|Name=Ggra3469.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000059_pilon:276609..278294+ (Gracilaria gracilis GNS1m male)
ATGACGCCACTTTTGGCTTCGCTCCTTACGGCTCTCGTCACATCGTCCCG
TCCTTCCTTTAACGCGCAAGGAGAACGTCCGAGAATTGTGCCAGGACCTT
CTTCTCCCCGCGATGCAGAGCGTCCTGAAAATAATGCCAAGCAACATCCT
GTTGTTGCGATGGCGGCTGCCTATGCTCTGTTTCTCATTGGCAGGGAAAA
TGCGGTGGCGAAACGATTGAAGAGGGGGAGGGTGCCGAGACAGTTATCGG
TTTCCATTGACCTTTTTGGCGAGGAGCATGTCGAGGCTAGCTTGCTGACA
GGCGGTCCAACTAGGCCTGCTGCAGCGCGGAGGGAAGAACGACGCGTTCT
CAGGGAAGAGGCTGAATTAACCGCCACGTCCGATATGCGCACTGCTAAGA
GAGATATCGTTATTGTCACAACAGCAGCAATTCCATGGATGACGGGCACC
GCGGTAAACCCTGCCTTGCGTGCGTTATACTTAGCCAAGGACGGTCATCA
TGTCACGTTAGTTGTACCGTGGGTTCCGACTGAGGAACAGCAACTTGAAG
TTTTCTTTAGAGGCAGTCCTACTTTCTCTACGCAGCAGGAGCAACGTGAT
TATATACAACAATGGGGGTATAAGCAAGTGCAAGCTCACTTTGAGGTTCT
GTTTTATGATGGAGTACATGCACCTCATTTTGGTTCCATTCTACCAGTCG
GAGCCGTTACTGACATTATAGAAGCTCATGTCGCTAACAAGGACATATGT
ATTTTGGAAGAGCCAGAACATCTCACGTGGCATCATTCTGGGAAAGTATG
GACTCAGTTGTTTAAGTATGTTGTTGGCATTATACACACCAATTACATCG
AGTATGTGAGCAGTGTAGATTATGGAAAGGCTGTTGCGCTTTTGCTCCTG
AACATGTGGGTTTCCCGTAGTTACTGTCACCGAATCGTAAAGCTCTCCGA
CGCCGTGCAACTGTTCCCCAATTCCGTTACATGCAATGTGCATGGCGTTC
GGGATAAATTCATCGATATCGGAAGAAAGAGGAGTGGATCGTTTCCTCGT
GGTGCTTACTTCATGGGTAAAGTTCTGTGGGCGAAAGGCTATGAAGAACT
CATTAATTGTATGATTGCACACTACAAGGCCACCAATGAACCGCTTCCAA
TTGACTTTTACGGTGCTGGACCCGATGTTCCCGAAGTTCGTGAAAAAGTT
GATACACTCCCCGCTCTTTCTGCAGTCCACTTCGATGCACGGGTTGCGGA
CCCTGCAAGCGAATGGTTACAAGGCTATAAAGTGTTTGTCAATGCTTCTA
GAAGTGATGTGGTTTGCACAGCTACTGCTGAGGCGTTAGCGATGGGAAAG
CTTGTTGTGTGCCTGGAACATCCAAGCAACCAGTTCTTTGCTACCTTTCC
GAACTGCAGAACTTATCGCAACACGGAAGAGTTTTCTAAAGTTTTGCTCG
ATGCGCTGCAAAGCGAACCGCTTCCTCTCTCAGAGCAGGATGCCTACAGG
TTTACTTGGGAGGCCGCTACGGAGAGACTGTATGATGCGATGCGAATGCC
ATTGCACAAGAGTAAGCCCAGTAAGGTCGGAGCCGCTTTAGCTAATGCCC
ACACTACTCTCTCGAAGATTTACCCTCAACCTGGAAAGAAGCTTCAGACA
GTGAGATCAAGGGAGTCTCTTCAAGCACGTACATAA

Coding sequence (CDS) from alignment at tig00000059_pilon:276609..278294+

>Ggra3469.t1 ID=Ggra3469.t1|Name=Ggra3469.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1686bp|location=Sequence derived from alignment at tig00000059_pilon:276609..278294+ (Gracilaria gracilis GNS1m male)
ATGACGCCACTTTTGGCTTCGCTCCTTACGGCTCTCGTCACATCGTCCCG
TCCTTCCTTTAACGCGCAAGGAGAACGTCCGAGAATTGTGCCAGGACCTT
CTTCTCCCCGCGATGCAGAGCGTCCTGAAAATAATGCCAAGCAACATCCT
GTTGTTGCGATGGCGGCTGCCTATGCTCTGTTTCTCATTGGCAGGGAAAA
TGCGGTGGCGAAACGATTGAAGAGGGGGAGGGTGCCGAGACAGTTATCGG
TTTCCATTGACCTTTTTGGCGAGGAGCATGTCGAGGCTAGCTTGCTGACA
GGCGGTCCAACTAGGCCTGCTGCAGCGCGGAGGGAAGAACGACGCGTTCT
CAGGGAAGAGGCTGAATTAACCGCCACGTCCGATATGCGCACTGCTAAGA
GAGATATCGTTATTGTCACAACAGCAGCAATTCCATGGATGACGGGCACC
GCGGTAAACCCTGCCTTGCGTGCGTTATACTTAGCCAAGGACGGTCATCA
TGTCACGTTAGTTGTACCGTGGGTTCCGACTGAGGAACAGCAACTTGAAG
TTTTCTTTAGAGGCAGTCCTACTTTCTCTACGCAGCAGGAGCAACGTGAT
TATATACAACAATGGGGGTATAAGCAAGTGCAAGCTCACTTTGAGGTTCT
GTTTTATGATGGAGTACATGCACCTCATTTTGGTTCCATTCTACCAGTCG
GAGCCGTTACTGACATTATAGAAGCTCATGTCGCTAACAAGGACATATGT
ATTTTGGAAGAGCCAGAACATCTCACGTGGCATCATTCTGGGAAAGTATG
GACTCAGTTGTTTAAGTATGTTGTTGGCATTATACACACCAATTACATCG
AGTATGTGAGCAGTGTAGATTATGGAAAGGCTGTTGCGCTTTTGCTCCTG
AACATGTGGGTTTCCCGTAGTTACTGTCACCGAATCGTAAAGCTCTCCGA
CGCCGTGCAACTGTTCCCCAATTCCGTTACATGCAATGTGCATGGCGTTC
GGGATAAATTCATCGATATCGGAAGAAAGAGGAGTGGATCGTTTCCTCGT
GGTGCTTACTTCATGGGTAAAGTTCTGTGGGCGAAAGGCTATGAAGAACT
CATTAATTGTATGATTGCACACTACAAGGCCACCAATGAACCGCTTCCAA
TTGACTTTTACGGTGCTGGACCCGATGTTCCCGAAGTTCGTGAAAAAGTT
GATACACTCCCCGCTCTTTCTGCAGTCCACTTCGATGCACGGGTTGCGGA
CCCTGCAAGCGAATGGTTACAAGGCTATAAAGTGTTTGTCAATGCTTCTA
GAAGTGATGTGGTTTGCACAGCTACTGCTGAGGCGTTAGCGATGGGAAAG
CTTGTTGTGTGCCTGGAACATCCAAGCAACCAGTTCTTTGCTACCTTTCC
GAACTGCAGAACTTATCGCAACACGGAAGAGTTTTCTAAAGTTTTGCTCG
ATGCGCTGCAAAGCGAACCGCTTCCTCTCTCAGAGCAGGATGCCTACAGG
TTTACTTGGGAGGCCGCTACGGAGAGACTGTATGATGCGATGCGAATGCC
ATTGCACAAGAGTAAGCCCAGTAAGGTCGGAGCCGCTTTAGCTAATGCCC
ACACTACTCTCTCGAAGATTTACCCTCAACCTGGAAAGAAGCTTCAGACA
GTGAGATCAAGGGAGTCTCTTCAAGCACGTACATAA