Ggra3466.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3466.t1
Unique NameGgra3466.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:206826..207722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3466Ggra3466Gracilaria gracilis GNS1m malegenetig00000059_pilon 206826..207722 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3466.t1.start1Ggra3466.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 206826..206828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3466.t1.CDS1Ggra3466.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 206826..207722 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3466.t1.exon1Ggra3466.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 206826..207722 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3466.t1.stop1Ggra3466.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 207720..207722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3466.t1Ggra3466.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 206826..207722 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3466.t1 ID=Ggra3466.t1|Name=Ggra3466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=299bp
MANRSENDANTDLPRPLAQTAAASAPCPAPTETIPQTPKQRRHRFSTEED
LIILREAAFARAHISPIRKTIERFEVAAAKVNGTKKIKHVVTWKSVQDRY
KRLQERFDINDRTESAMSGLGGEMEEMDELLSIMTEARDDKQQEKEEKKQ
NEEEQELQKEKLGAFIKKRATKRKEAGGKDGSNEDRSQEKTPKRAKGNAS
SSFSIAEETQVFNDTLERGDARRIEIEEARFKLERAVRVRDKRTRTEPGR
TTSRAKWRPTYRNGKVPPYDGGYARNEGAGAFLHLRMLLDFTRSGYVV*
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spliced messenger RNA

>Ggra3466.t1 ID=Ggra3466.t1|Name=Ggra3466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000059_pilon:206826..207722+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAACCGCTCTGAAAACGATGCCAACACAGATCTTCCCAGACCCCT
GGCTCAAACCGCAGCCGCTTCTGCCCCATGCCCTGCTCCAACGGAAACGA
TACCCCAGACACCTAAACAACGCCGACATCGTTTTAGCACAGAAGAGGAT
TTAATCATTCTAAGAGAGGCCGCTTTTGCACGAGCGCATATATCTCCCAT
TAGGAAAACAATTGAGCGTTTTGAGGTAGCTGCAGCCAAAGTAAATGGTA
CCAAGAAAATTAAACATGTGGTGACATGGAAGTCCGTACAAGACAGGTAC
AAACGTTTACAAGAGCGATTTGACATAAACGACAGAACAGAATCAGCCAT
GAGTGGTTTGGGCGGAGAAATGGAAGAGATGGATGAATTGTTAAGCATCA
TGACGGAAGCAAGAGACGATAAACAGCAAGAGAAGGAGGAAAAGAAACAA
AATGAGGAAGAGCAAGAACTTCAGAAAGAGAAGTTGGGTGCTTTTATAAA
GAAGCGCGCAACAAAACGCAAAGAAGCGGGTGGAAAGGATGGTAGCAACG
AAGACAGATCTCAGGAAAAAACTCCGAAGCGAGCCAAGGGCAATGCGTCG
AGTAGCTTTTCCATTGCGGAAGAAACACAGGTGTTTAATGACACTTTAGA
GCGCGGCGATGCTCGGCGTATTGAAATTGAAGAGGCCCGTTTCAAGCTTG
AGAGAGCGGTTCGAGTCAGAGACAAAAGAACGCGAACTGAACCGGGAAGA
ACGACGTCAAGAGCGAAATGGCGCCCAACGTATCGAAATGGAAAAGTTCC
GCCTTATGATGGAGGTTATGCGAGGAATGAAGGCGCAGGAGCCTTTCTac
accttagaatgttactggactttacccgaagtggatacgtggtttaa
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protein sequence of Ggra3466.t1

>Ggra3466.t1 ID=Ggra3466.t1|Name=Ggra3466.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=299bp
MANRSENDANTDLPRPLAQTAAASAPCPAPTETIPQTPKQRRHRFSTEED
LIILREAAFARAHISPIRKTIERFEVAAAKVNGTKKIKHVVTWKSVQDRY
KRLQERFDINDRTESAMSGLGGEMEEMDELLSIMTEARDDKQQEKEEKKQ
NEEEQELQKEKLGAFIKKRATKRKEAGGKDGSNEDRSQEKTPKRAKGNAS
SSFSIAEETQVFNDTLERGDARRIEIEEARFKLERAVRVRDKRTRTEPGR
TTSRAKWRPTYRNGKVPPYDGGYARNEGAGAFLHLRMLLDFTRSGYVV*
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mRNA from alignment at tig00000059_pilon:206826..207722+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3466.t1 ID=Ggra3466.t1|Name=Ggra3466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000059_pilon:206826..207722+ (Gracilaria gracilis GNS1m male)
ATGGCGAACCGCTCTGAAAACGATGCCAACACAGATCTTCCCAGACCCCT
GGCTCAAACCGCAGCCGCTTCTGCCCCATGCCCTGCTCCAACGGAAACGA
TACCCCAGACACCTAAACAACGCCGACATCGTTTTAGCACAGAAGAGGAT
TTAATCATTCTAAGAGAGGCCGCTTTTGCACGAGCGCATATATCTCCCAT
TAGGAAAACAATTGAGCGTTTTGAGGTAGCTGCAGCCAAAGTAAATGGTA
CCAAGAAAATTAAACATGTGGTGACATGGAAGTCCGTACAAGACAGGTAC
AAACGTTTACAAGAGCGATTTGACATAAACGACAGAACAGAATCAGCCAT
GAGTGGTTTGGGCGGAGAAATGGAAGAGATGGATGAATTGTTAAGCATCA
TGACGGAAGCAAGAGACGATAAACAGCAAGAGAAGGAGGAAAAGAAACAA
AATGAGGAAGAGCAAGAACTTCAGAAAGAGAAGTTGGGTGCTTTTATAAA
GAAGCGCGCAACAAAACGCAAAGAAGCGGGTGGAAAGGATGGTAGCAACG
AAGACAGATCTCAGGAAAAAACTCCGAAGCGAGCCAAGGGCAATGCGTCG
AGTAGCTTTTCCATTGCGGAAGAAACACAGGTGTTTAATGACACTTTAGA
GCGCGGCGATGCTCGGCGTATTGAAATTGAAGAGGCCCGTTTCAAGCTTG
AGAGAGCGGTTCGAGTCAGAGACAAAAGAACGCGAACTGAACCGGGAAGA
ACGACGTCAAGAGCGAAATGGCGCCCAACGTATCGAAATGGAAAAGTTCC
GCCTTATGATGGAGGTTATGCGAGGAATGAAGGCGCAGGAGCCTTTCTac
accttagaatgttactggactttacccgaagtggatacgtggtttaa
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Coding sequence (CDS) from alignment at tig00000059_pilon:206826..207722+

>Ggra3466.t1 ID=Ggra3466.t1|Name=Ggra3466.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00000059_pilon:206826..207722+ (Gracilaria gracilis GNS1m male)
ATGGCGAACCGCTCTGAAAACGATGCCAACACAGATCTTCCCAGACCCCT
GGCTCAAACCGCAGCCGCTTCTGCCCCATGCCCTGCTCCAACGGAAACGA
TACCCCAGACACCTAAACAACGCCGACATCGTTTTAGCACAGAAGAGGAT
TTAATCATTCTAAGAGAGGCCGCTTTTGCACGAGCGCATATATCTCCCAT
TAGGAAAACAATTGAGCGTTTTGAGGTAGCTGCAGCCAAAGTAAATGGTA
CCAAGAAAATTAAACATGTGGTGACATGGAAGTCCGTACAAGACAGGTAC
AAACGTTTACAAGAGCGATTTGACATAAACGACAGAACAGAATCAGCCAT
GAGTGGTTTGGGCGGAGAAATGGAAGAGATGGATGAATTGTTAAGCATCA
TGACGGAAGCAAGAGACGATAAACAGCAAGAGAAGGAGGAAAAGAAACAA
AATGAGGAAGAGCAAGAACTTCAGAAAGAGAAGTTGGGTGCTTTTATAAA
GAAGCGCGCAACAAAACGCAAAGAAGCGGGTGGAAAGGATGGTAGCAACG
AAGACAGATCTCAGGAAAAAACTCCGAAGCGAGCCAAGGGCAATGCGTCG
AGTAGCTTTTCCATTGCGGAAGAAACACAGGTGTTTAATGACACTTTAGA
GCGCGGCGATGCTCGGCGTATTGAAATTGAAGAGGCCCGTTTCAAGCTTG
AGAGAGCGGTTCGAGTCAGAGACAAAAGAACGCGAACTGAACCGGGAAGA
ACGACGTCAAGAGCGAAATGGCGCCCAACGTATCGAAATGGAAAAGTTCC
GCCTTATGATGGAGGTTATGCGAGGAATGAAGGCGCAGGAGCCTTTCTac
accttagaatgttactggactttacccgaagtggatacgtggtttaa
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