Ggra3464.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3464.t1
Unique NameGgra3464.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length624
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:187790..189820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_03312T0
Preferred nameDUR3
PFAMsSSF
Max annot lvl33154|Opisthokonta
KEGG koko:K20989
KEGG TC2.A.21.6
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008519,GO:0009056,GO:0009987,GO:0012505,GO:0015075,GO:0015101,GO:0015203,GO:0015204,GO:0015291,GO:0015293,GO:0015489,GO:0015606,GO:0015695,GO:0015696,GO:0015840,GO:0015846,GO:0015847,GO:0015848,GO:0016020,GO:0016021,GO:0019627,GO:0019755,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0034641,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043419,GO:0043603,GO:0043605,GO:0044237,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071918,GO:0071941,GO:0071944,GO:0072488,GO:0098655,GO:1901564,GO:1901565,GO:1901575,GO:1902047,GO:1903711
Evalue1.08e-220
EggNOG OGsCOG0591@1|root,KOG2348@2759|Eukaryota,38H6Q@33154|Opisthokonta
Descriptionputrescine transmembrane transporter activity
COG categoryE
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3464Ggra3464Gracilaria gracilis GNS1m malegenetig00000059_pilon 187790..189820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3464.t1Ggra3464.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 187790..189820 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3464.t1.start1Ggra3464.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 187790..187792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3464.t1.CDS1Ggra3464.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 187790..189548 +
Ggra3464.t1.CDS2Ggra3464.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 189708..189820 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3464.t1.exon1Ggra3464.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 187790..189548 +
Ggra3464.t1.exon2Ggra3464.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 189708..189820 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3464.t1.intron1Ggra3464.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 189549..189707 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3464.t1.stop1Ggra3464.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 189818..189820 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3464.t1 ID=Ggra3464.t1|Name=Ggra3464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp
MTSPAEPFISPSFFNFSCNEELRTKVVRNFFNLTRYQCRTEFFSDPPLSL
GIGFAVVLAFGLAFGVGTVALVFIDQYIFRRVMNSEYFNTAGRSVRTGLT
ASVIVSQWTWAATLLQSSNAAFQYGVSGPLWYAAGATVQVILFSTIAVLV
KLRAPTAHTFLEIVRARWGVVAHLTFLGFALITNIIVTSMLVLGASVTVN
ALTGMHADLASFLIPLGVILYTLAGGLKATFVASYFNTAVILISLVVFMF
KVYVTSDDLGSPGAVYDNLEFVSGIQGVEDNLGGSYLTLLSRNGFFFGLV
NLVGNFGTVFIDQSYWQSAIAATPTASWRGYLLGGLCWFAIPFSLATSLG
LAAVARSLPLTNDEADQGLVPPAAAYDLMGQDGASLVLVMLFMAVTSSGA
SEQIALSSIVSYDVFRSYINPNCSGQQVIFLSRIVILVFGLLMGGLGIAL
HHIGVNLDFLYKAMGVFIGPAVVPVAYSISWGRCSAKGAVIGAWTGLICG
LSVWFAYGASFPGGVTIKNLKKDEVMLAGNLTSILSSALVCTVVSMFKPD
DCDWSTTKAIPLIEDDPNAHIAFETEEALEQALKRIVESRHGILTLLSGG
RLGLARKDEDEDVGLQDFVVEER*
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spliced messenger RNA

>Ggra3464.t1 ID=Ggra3464.t1|Name=Ggra3464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00000059_pilon:187790..189820+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAGCCCTGCCGAGCCGTTCATTTCCCCTTCCTTCTTCAACTTCAG
CTGTAATGAGGAACTCAGGACCAAGGTTGTTCGAAACTTCTTCAACCTTA
CGCGCTATCAATGCCGCACCGAGTTCTTTTCCGACCCACCTTTGTCCCTG
GGCATCGGTTTCGCCGTCGTTCTTGCGTTCGGCCTCGCTTTCGGAGTTGG
CACCGTCGCTCTTGTCTTCATTGACCAATACATCTTTCGTCGCGTCATGA
ACTCCGAGTACTTCAACACTGCCGGTCGTTCCGTGCGAACCGGTCTCACT
GCCTCTGTCATTGTTTCGCAGTGGACGTGGGCTGCTACCTTGCTGCAGAG
CTCCAACGCAGCGTTTCAGTATGGCGTCTCGGGTCCGTTATGGTACGCTG
CGGGTGCCACTGTTCAGGTCATTCTGTTCTCTACCATTGCGGTGCTGGTC
AAGTTGAGGGCGCCCACAGCTCATACCTTCCTTGAAATTGTTCGCGCTCG
ATGGGGCGTTGTCGCCCATCTCACGTTCTTGGGGTTCGCATTGATTACAA
ACATTATTGTCACTAGTATGCTCGTTTTGGGAGCTAGTGTCACGGTTAAT
GCACTCACGGGCATGCATGCGGACCTTGCAAGCTTCCTCATTCCTCTAGG
CGTGATTCTCTATACGCTGGCGGGTGGGTTGAAGGCCACCTTCGTGGCGA
GCTATTTCAACACTGCTGTCATTCTAATATCACTCGTTGTCTTCATGTTC
AAGGTCTATGTCACGTCAGATGATTTGGGCTCCCCCGGTGCTGTGTATGA
CAACCTTGAGTTTGTTTCTGGAATTCAAGGGGTTGAGGACAACCTTGGTG
GATCCTATCTCACTCTACTTTCACGGAATGGCTTCTTCTTTGGTCTAGTC
AATCTGGTTGGCAACTTTGGAACTGTTTTCATCGACCAGTCGTACTGGCA
ATCTGCCATTGCGGCCACACCCACTGCGTCGTGGAGAGGGTATCTTCTCG
GTGGTCTATGTTGGTTTGCAATCCCTTTTTCACTGGCCACATCGCTCGGC
CTTGCCGCTGTCGCTCGTTCTCTCCCGCTGACGAATGACGAGGCCGACCA
AGGTTTAGTTCCTCCGGCAGCAGCTTATGATCTCATGGGACAAGACGGAG
CATCCCTAGTGCTGGTAATGCTCTTCATGGCGGTGACCTCATCCGGAGCA
TCAGAGCAGATTGCTTTGTCTTCCATTGTGTCCTACGATGTCTTCAGGTC
ATATATCAATCCCAACTGCTCTGGACAGCAAGTAATCTTTCTCTCTCGTA
TTGTAATTCTAGTGTTTGGGCTATTAATGGGGGGACTTGGTATTGCTCTT
CATCACATTGGAGTCAACCTGGACTTCTTATACAAGGCCATGGGAGTATT
CATCGGTCCCGCCGTTGTTCCCGTTGCTTACTCAATATCCTGGGGTCGTT
GCTCTGCAAAGGGGGCCGTTATAGGTGCCTGGACGGGGCTGATCTGTGGT
TTGTCCGTTTGGTTTGCGTATGGAGCCTCGTTTCCAGGAGGTGTTACCAT
AAAAAATCTGAAGAAAGATGAAGTGATGTTGGCTGGGAATCTGACTTCCA
TTTTATCATCCGCTTTAGTGTGCACGGTCGTGAGTATGTTTAAGCCTGAC
GATTGCGATTGGAGTACCACCAAAGCCATCCCATTGATCGAAGATGACCC
GAACGCACATATTGCATTTGAAACTGAAGAAGCTCTTGAGCAAGCCCTGA
AGAGGATTGTTGAGTCAAGGCACGGTATATTAACGTTGCTTTCAGGTGGA
AGGCTGGGTTTGGCTCGGAAAGATGAAGATGAGGATGTCGGACTTCAGGA
CTTTGTAGTCGAGGAGAGATGA
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protein sequence of Ggra3464.t1

>Ggra3464.t1 ID=Ggra3464.t1|Name=Ggra3464.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=624bp
MTSPAEPFISPSFFNFSCNEELRTKVVRNFFNLTRYQCRTEFFSDPPLSL
GIGFAVVLAFGLAFGVGTVALVFIDQYIFRRVMNSEYFNTAGRSVRTGLT
ASVIVSQWTWAATLLQSSNAAFQYGVSGPLWYAAGATVQVILFSTIAVLV
KLRAPTAHTFLEIVRARWGVVAHLTFLGFALITNIIVTSMLVLGASVTVN
ALTGMHADLASFLIPLGVILYTLAGGLKATFVASYFNTAVILISLVVFMF
KVYVTSDDLGSPGAVYDNLEFVSGIQGVEDNLGGSYLTLLSRNGFFFGLV
NLVGNFGTVFIDQSYWQSAIAATPTASWRGYLLGGLCWFAIPFSLATSLG
LAAVARSLPLTNDEADQGLVPPAAAYDLMGQDGASLVLVMLFMAVTSSGA
SEQIALSSIVSYDVFRSYINPNCSGQQVIFLSRIVILVFGLLMGGLGIAL
HHIGVNLDFLYKAMGVFIGPAVVPVAYSISWGRCSAKGAVIGAWTGLICG
LSVWFAYGASFPGGVTIKNLKKDEVMLAGNLTSILSSALVCTVVSMFKPD
DCDWSTTKAIPLIEDDPNAHIAFETEEALEQALKRIVESRHGILTLLSGG
RLGLARKDEDEDVGLQDFVVEER*
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mRNA from alignment at tig00000059_pilon:187790..189820+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3464.t1 ID=Ggra3464.t1|Name=Ggra3464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000059_pilon:187790..189820+ (Gracilaria gracilis GNS1m male)
ATGACTAGCCCTGCCGAGCCGTTCATTTCCCCTTCCTTCTTCAACTTCAG
CTGTAATGAGGAACTCAGGACCAAGGTTGTTCGAAACTTCTTCAACCTTA
CGCGCTATCAATGCCGCACCGAGTTCTTTTCCGACCCACCTTTGTCCCTG
GGCATCGGTTTCGCCGTCGTTCTTGCGTTCGGCCTCGCTTTCGGAGTTGG
CACCGTCGCTCTTGTCTTCATTGACCAATACATCTTTCGTCGCGTCATGA
ACTCCGAGTACTTCAACACTGCCGGTCGTTCCGTGCGAACCGGTCTCACT
GCCTCTGTCATTGTTTCGCAGTGGACGTGGGCTGCTACCTTGCTGCAGAG
CTCCAACGCAGCGTTTCAGTATGGCGTCTCGGGTCCGTTATGGTACGCTG
CGGGTGCCACTGTTCAGGTCATTCTGTTCTCTACCATTGCGGTGCTGGTC
AAGTTGAGGGCGCCCACAGCTCATACCTTCCTTGAAATTGTTCGCGCTCG
ATGGGGCGTTGTCGCCCATCTCACGTTCTTGGGGTTCGCATTGATTACAA
ACATTATTGTCACTAGTATGCTCGTTTTGGGAGCTAGTGTCACGGTTAAT
GCACTCACGGGCATGCATGCGGACCTTGCAAGCTTCCTCATTCCTCTAGG
CGTGATTCTCTATACGCTGGCGGGTGGGTTGAAGGCCACCTTCGTGGCGA
GCTATTTCAACACTGCTGTCATTCTAATATCACTCGTTGTCTTCATGTTC
AAGGTCTATGTCACGTCAGATGATTTGGGCTCCCCCGGTGCTGTGTATGA
CAACCTTGAGTTTGTTTCTGGAATTCAAGGGGTTGAGGACAACCTTGGTG
GATCCTATCTCACTCTACTTTCACGGAATGGCTTCTTCTTTGGTCTAGTC
AATCTGGTTGGCAACTTTGGAACTGTTTTCATCGACCAGTCGTACTGGCA
ATCTGCCATTGCGGCCACACCCACTGCGTCGTGGAGAGGGTATCTTCTCG
GTGGTCTATGTTGGTTTGCAATCCCTTTTTCACTGGCCACATCGCTCGGC
CTTGCCGCTGTCGCTCGTTCTCTCCCGCTGACGAATGACGAGGCCGACCA
AGGTTTAGTTCCTCCGGCAGCAGCTTATGATCTCATGGGACAAGACGGAG
CATCCCTAGTGCTGGTAATGCTCTTCATGGCGGTGACCTCATCCGGAGCA
TCAGAGCAGATTGCTTTGTCTTCCATTGTGTCCTACGATGTCTTCAGGTC
ATATATCAATCCCAACTGCTCTGGACAGCAAGTAATCTTTCTCTCTCGTA
TTGTAATTCTAGTGTTTGGGCTATTAATGGGGGGACTTGGTATTGCTCTT
CATCACATTGGAGTCAACCTGGACTTCTTATACAAGGCCATGGGAGTATT
CATCGGTCCCGCCGTTGTTCCCGTTGCTTACTCAATATCCTGGGGTCGTT
GCTCTGCAAAGGGGGCCGTTATAGGTGCCTGGACGGGGCTGATCTGTGGT
TTGTCCGTTTGGTTTGCGTATGGAGCCTCGTTTCCAGGAGGTGTTACCAT
AAAAAATCTGAAGAAAGATGAAGTGATGTTGGCTGGGAATCTGACTTCCA
TTTTATCATCCGCTTTAGTGTGCACGGTCGTGAGTATGTTTAAGCCTGAC
GATTGCGATTGGAGTACCACCAAAGCCATCCCATTGATCGAAGATGACCC
GAACGCACATATTGCATTTGAAACTGAAGAAGCTCTTGAGCAAGCCCTGA
AGAGGATTGGTCTAATTGGTCTACTCGTGGCCTTCGTCTtgatgatctta
tggccagcacttacgttgccggcccgagtcttttcaaagaactacttccg
gttttgggtcataatttcgttcatctggGGAATAACCTCTTGTATACTAA
TGGTCATTTTGCCCCTAGTTGAGTCAAGGCACGGTATATTAACGTTGCTT
TCAGGTGGAAGGCTGGGTTTGGCTCGGAAAGATGAAGATGAGGATGTCGG
ACTTCAGGACTTTGTAGTCGAGGAGAGATGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:187790..189820+

>Ggra3464.t1 ID=Ggra3464.t1|Name=Ggra3464.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1872bp|location=Sequence derived from alignment at tig00000059_pilon:187790..189820+ (Gracilaria gracilis GNS1m male)
ATGACTAGCCCTGCCGAGCCGTTCATTTCCCCTTCCTTCTTCAACTTCAG
CTGTAATGAGGAACTCAGGACCAAGGTTGTTCGAAACTTCTTCAACCTTA
CGCGCTATCAATGCCGCACCGAGTTCTTTTCCGACCCACCTTTGTCCCTG
GGCATCGGTTTCGCCGTCGTTCTTGCGTTCGGCCTCGCTTTCGGAGTTGG
CACCGTCGCTCTTGTCTTCATTGACCAATACATCTTTCGTCGCGTCATGA
ACTCCGAGTACTTCAACACTGCCGGTCGTTCCGTGCGAACCGGTCTCACT
GCCTCTGTCATTGTTTCGCAGTGGACGTGGGCTGCTACCTTGCTGCAGAG
CTCCAACGCAGCGTTTCAGTATGGCGTCTCGGGTCCGTTATGGTACGCTG
CGGGTGCCACTGTTCAGGTCATTCTGTTCTCTACCATTGCGGTGCTGGTC
AAGTTGAGGGCGCCCACAGCTCATACCTTCCTTGAAATTGTTCGCGCTCG
ATGGGGCGTTGTCGCCCATCTCACGTTCTTGGGGTTCGCATTGATTACAA
ACATTATTGTCACTAGTATGCTCGTTTTGGGAGCTAGTGTCACGGTTAAT
GCACTCACGGGCATGCATGCGGACCTTGCAAGCTTCCTCATTCCTCTAGG
CGTGATTCTCTATACGCTGGCGGGTGGGTTGAAGGCCACCTTCGTGGCGA
GCTATTTCAACACTGCTGTCATTCTAATATCACTCGTTGTCTTCATGTTC
AAGGTCTATGTCACGTCAGATGATTTGGGCTCCCCCGGTGCTGTGTATGA
CAACCTTGAGTTTGTTTCTGGAATTCAAGGGGTTGAGGACAACCTTGGTG
GATCCTATCTCACTCTACTTTCACGGAATGGCTTCTTCTTTGGTCTAGTC
AATCTGGTTGGCAACTTTGGAACTGTTTTCATCGACCAGTCGTACTGGCA
ATCTGCCATTGCGGCCACACCCACTGCGTCGTGGAGAGGGTATCTTCTCG
GTGGTCTATGTTGGTTTGCAATCCCTTTTTCACTGGCCACATCGCTCGGC
CTTGCCGCTGTCGCTCGTTCTCTCCCGCTGACGAATGACGAGGCCGACCA
AGGTTTAGTTCCTCCGGCAGCAGCTTATGATCTCATGGGACAAGACGGAG
CATCCCTAGTGCTGGTAATGCTCTTCATGGCGGTGACCTCATCCGGAGCA
TCAGAGCAGATTGCTTTGTCTTCCATTGTGTCCTACGATGTCTTCAGGTC
ATATATCAATCCCAACTGCTCTGGACAGCAAGTAATCTTTCTCTCTCGTA
TTGTAATTCTAGTGTTTGGGCTATTAATGGGGGGACTTGGTATTGCTCTT
CATCACATTGGAGTCAACCTGGACTTCTTATACAAGGCCATGGGAGTATT
CATCGGTCCCGCCGTTGTTCCCGTTGCTTACTCAATATCCTGGGGTCGTT
GCTCTGCAAAGGGGGCCGTTATAGGTGCCTGGACGGGGCTGATCTGTGGT
TTGTCCGTTTGGTTTGCGTATGGAGCCTCGTTTCCAGGAGGTGTTACCAT
AAAAAATCTGAAGAAAGATGAAGTGATGTTGGCTGGGAATCTGACTTCCA
TTTTATCATCCGCTTTAGTGTGCACGGTCGTGAGTATGTTTAAGCCTGAC
GATTGCGATTGGAGTACCACCAAAGCCATCCCATTGATCGAAGATGACCC
GAACGCACATATTGCATTTGAAACTGAAGAAGCTCTTGAGCAAGCCCTGA
AGAGGATTGTTGAGTCAAGGCACGGTATATTAACGTTGCTTTCAGGTGGA
AGGCTGGGTTTGGCTCGGAAAGATGAAGATGAGGATGTCGGACTTCAGGA
CTTTGTAGTCGAGGAGAGATGA
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