Ggra3462.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3462.t1
Unique NameGgra3462.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length76
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:184326..184640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD068CT
Max annot lvl2759|Eukaryota
Evalue4.63e-17
EggNOG OGs2CGJ1@1|root,2SBJS@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3462Ggra3462Gracilaria gracilis GNS1m malegenetig00000059_pilon 184326..184640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3462.t1Ggra3462.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 184326..184640 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3462.t1.stop1Ggra3462.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 184326..184328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3462.t1.CDS1Ggra3462.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 184326..184394 -
Ggra3462.t1.CDS2Ggra3462.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 184482..184640 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3462.t1.exon1Ggra3462.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 184326..184394 -
Ggra3462.t1.exon2Ggra3462.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 184482..184640 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3462.t1.intron1Ggra3462.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 184395..184481 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3462.t1.start1Ggra3462.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 184638..184640 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3462.t1 ID=Ggra3462.t1|Name=Ggra3462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=76bp
MGEGPRFQYPKEVWSPGGGWWPYPKKWRANTAMTLALIFALSIPVAIISE
KKMITVGQPHRRIPWRPGLKPADEE*
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spliced messenger RNA

>Ggra3462.t1 ID=Ggra3462.t1|Name=Ggra3462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp|location=Sequence derived from alignment at tig00000059_pilon:184326..184640- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAAGGACCGCGTTTTCAATACCCCAAGGAAGTCTGGTCTCCGGG
CGGTGGTTGGTGGCCGTATCCGAAGAAATGGCGCGCCAATACCGCGATGA
CTCTTGCACTGATCTTTGCTCTTTCCATTCCGGTGGCCATAATATCAGAG
AAGAAGATGATCACCGTGGGTCAACCGCATCGACGTATTCCGTGGAGACC
TGGACTGAAGCCCGCTGATGAGGAGTAA
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protein sequence of Ggra3462.t1

>Ggra3462.t1 ID=Ggra3462.t1|Name=Ggra3462.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=76bp
MGEGPRFQYPKEVWSPGGGWWPYPKKWRANTAMTLALIFALSIPVAIISE
KKMITVGQPHRRIPWRPGLKPADEE*
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mRNA from alignment at tig00000059_pilon:184326..184640-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3462.t1 ID=Ggra3462.t1|Name=Ggra3462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp|location=Sequence derived from alignment at tig00000059_pilon:184326..184640- (Gracilaria gracilis GNS1m male)
ATGGGAGAAGGACCGCGTTTTCAATACCCCAAGGAAGTCTGGTCTCCGGG
CGGTGGTTGGTGGCCGTATCCGAAGAAATGGCGCGCCAATACCGCGATGA
CTCTTGCACTGATCTTTGCTCTTTCCATTCCGGTGGCCATAATATCAGAG
AAGAAGATGGTAAGCAATGACGTTCTTGTGTTTATGCGCGTCCTCCACAC
TCCACGATACTGATCTAACAAACTTTTCGTTCGCTCAAAAATCAAGATCA
CCGTGGGTCAACCGCATCGACGTATTCCGTGGAGACCTGGACTGAAGCCC
GCTGATGAGGAGTAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:184326..184640-

>Ggra3462.t1 ID=Ggra3462.t1|Name=Ggra3462.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=228bp|location=Sequence derived from alignment at tig00000059_pilon:184326..184640- (Gracilaria gracilis GNS1m male)
ATGGGAGAAGGACCGCGTTTTCAATACCCCAAGGAAGTCTGGTCTCCGGG
CGGTGGTTGGTGGCCGTATCCGAAGAAATGGCGCGCCAATACCGCGATGA
CTCTTGCACTGATCTTTGCTCTTTCCATTCCGGTGGCCATAATATCAGAG
AAGAAGATGATCACCGTGGGTCAACCGCATCGACGTATTCCGTGGAGACC
TGGACTGAAGCCCGCTGATGAGGAGTAA
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