Ggra3461.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3461.t1
Unique NameGgra3461.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:182712..184103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9361.ENSDNOP00000006243
Preferred nameFH
PFAMsFumaraseC_C,Lyase_1
Max annot lvl33208|Metazoa
KEGG rclassRC00443
KEGG koko:K01679
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
GOsGO:0001894,GO:0003674,GO:0003824,GO:0004333,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031974,GO:0032501,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0048871,GO:0048872,GO:0048873,GO:0055114,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072350
Evalue3.36e-241
EggNOG OGsCOG0114@1|root,KOG1317@2759|Eukaryota,38GHX@33154|Opisthokonta,3BB3C@33208|Metazoa,3CUSS@33213|Bilateria,487GR@7711|Chordata,490UB@7742|Vertebrata,3J6FA@40674|Mammalia
EC4.2.1.2
DescriptionFumarate hydratase
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3461Ggra3461Gracilaria gracilis GNS1m malegenetig00000059_pilon 182712..184103 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3461.t1.start1Ggra3461.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 182712..182714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3461.t1.CDS1Ggra3461.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 182712..184103 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3461.t1.exon1Ggra3461.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 182712..184103 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3461.t1.stop1Ggra3461.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 184101..184103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3461.t1Ggra3461.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 182712..184103 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3461.t1 ID=Ggra3461.t1|Name=Ggra3461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=464bp
MSYRIETDTFGEINVPSDRYWGAQTQRSISNFDICKDTDRMPLPVIHAFG
VLKQATAFANRTYGLDQSIATAIETAAADVAAGKLDDHFPLVVWQTGSGT
QSNMNVNEVISNRAIELLGGQRGSKQPVHPNDHVNKSQSSNDTFPTAMHI
ALARELNSRLIPSLTSLADTFDQKAQQYKHVIKIGRTHCMDAVPLTYAQE
FSAYVRQLRQAVCRIRACLPDVYELAIGGTAVGTGLNTRVGFAEKVADKV
AELTGLPFVTAENKFEALAAHDAVVFTSGALNTAATSLMKIANDIRLLGS
GPRCGLGELMLPENEPGSSIMPGKVNPTQCEAVTMACAQVIGNHVAVTVG
GTNGHFELNVFKPMMIHNVLHSVRLLSDCAVSFEKNCIQGLQVNEDRVAQ
LLKESLMLVTALNPVIGYDKAAQIAKKAHKEGSTLREAAVSLGFLTPEKF
DEAVVPANMIGPK*
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spliced messenger RNA

>Ggra3461.t1 ID=Ggra3461.t1|Name=Ggra3461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000059_pilon:182712..184103+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTACCGCATCGAGACCGATACCTTTGGCGAGATCAACGTTCCTTC
CGATCGCTACTGGGGAGCACAGACGCAGCGATCCATCTCCAACTTTGACA
TTTGCAAAGATACCGACCGTATGCCCCTTCCAGTCATTCACGCCTTCGGA
GTTCTCAAACAGGCCACTGCCTTCGCAAATCGCACCTACGGCCTGGATCA
ATCCATTGCCACCGCCATCGAAACTGCCGCTGCTGACGTTGCCGCCGGCA
AGCTTGACGACCACTTCCCGCTCGTTGTGTGGCAGACCGGCTCGGGAACC
CAATCCAACATGAACGTCAACGAAGTCATTTCTAACAGAGCCATTGAACT
TCTGGGAGGACAGCGTGGATCCAAACAGCCAGTCCATCCAAATGATCACG
TTAACAAATCACAGTCTTCGAACGACACCTTTCCAACAGCCATGCATATT
GCGCTTGCGCGCGAATTAAACTCCCGTCTTATTCCATCGCTCACTTCGCT
CGCCGACACTTTCGATCAGAAAGCTCAGCAATACAAACATGTCATCAAAA
TAGGTCGCACTCATTGTATGGACGCTGTCCCTCTCACCTACGCTCAGGAG
TTTTCTGCATACGTTCGACAGCTTCGTCAGGCTGTTTGTCGCATCCGCGC
CTGTTTGCCGGATGTTTACGAGCTGGCCATTGGCGGAACCGCCGTTGGAA
CCGGCTTGAATACCAGAGTAGGTTTTGCTGAAAAGGTCGCTGATAAGGTT
GCCGAATTAACTGGCTTGCCCTTTGTCACCGCCGAGAACAAGTTTGAGGC
GCTGGCTGCACATGATGCTGTCGTATTCACGAGTGGCGCTTTGAACACGG
CGGCTACTTCACTCATGAAGATTGCCAATGATATTCGATTGCTGGGATCC
GGGCCGCGATGTGGACTGGGCGAACTCATGCTGCCTGAAAATGAACCGGG
AAGTTCAATCATGCCTGGCAAAGTGAATCCAACGCAATGTGAGGCCGTCA
CCATGGCTTGTGCGCAGGTGATTGGAAATCACGTCGCAGTTACTGTTGGT
GGTACAAACGGCCACTTTGAGCTGAATGTTTTCAAACCAATGATGATTCA
TAACGTTCTTCACAGCGTTAGATTACTCAGTGATTGTGCTGTTTCGTTCG
AGAAGAACTGCATTCAAGGACTTCAGGTCAATGAAGACAGAGTTGCTCAG
CTTCTGAAGGAGAGCTTGATGCTGGTAACTGCGTTGAATCCTGTTATTGG
ATATGATAAAGCTGCACAGATTGCTAAAAAGGCTCACAAGGAAGGCAGTA
CACTACGGGAAGCTGCCGTGTCTCTTGGTTTTCTCACACCAGAGAAGTTC
GATGAGGCTGTTGTACCCGCTAATATGATCGGACCAAAGTAA
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protein sequence of Ggra3461.t1

>Ggra3461.t1 ID=Ggra3461.t1|Name=Ggra3461.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=464bp
MSYRIETDTFGEINVPSDRYWGAQTQRSISNFDICKDTDRMPLPVIHAFG
VLKQATAFANRTYGLDQSIATAIETAAADVAAGKLDDHFPLVVWQTGSGT
QSNMNVNEVISNRAIELLGGQRGSKQPVHPNDHVNKSQSSNDTFPTAMHI
ALARELNSRLIPSLTSLADTFDQKAQQYKHVIKIGRTHCMDAVPLTYAQE
FSAYVRQLRQAVCRIRACLPDVYELAIGGTAVGTGLNTRVGFAEKVADKV
AELTGLPFVTAENKFEALAAHDAVVFTSGALNTAATSLMKIANDIRLLGS
GPRCGLGELMLPENEPGSSIMPGKVNPTQCEAVTMACAQVIGNHVAVTVG
GTNGHFELNVFKPMMIHNVLHSVRLLSDCAVSFEKNCIQGLQVNEDRVAQ
LLKESLMLVTALNPVIGYDKAAQIAKKAHKEGSTLREAAVSLGFLTPEKF
DEAVVPANMIGPK*
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mRNA from alignment at tig00000059_pilon:182712..184103+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3461.t1 ID=Ggra3461.t1|Name=Ggra3461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000059_pilon:182712..184103+ (Gracilaria gracilis GNS1m male)
ATGTCGTACCGCATCGAGACCGATACCTTTGGCGAGATCAACGTTCCTTC
CGATCGCTACTGGGGAGCACAGACGCAGCGATCCATCTCCAACTTTGACA
TTTGCAAAGATACCGACCGTATGCCCCTTCCAGTCATTCACGCCTTCGGA
GTTCTCAAACAGGCCACTGCCTTCGCAAATCGCACCTACGGCCTGGATCA
ATCCATTGCCACCGCCATCGAAACTGCCGCTGCTGACGTTGCCGCCGGCA
AGCTTGACGACCACTTCCCGCTCGTTGTGTGGCAGACCGGCTCGGGAACC
CAATCCAACATGAACGTCAACGAAGTCATTTCTAACAGAGCCATTGAACT
TCTGGGAGGACAGCGTGGATCCAAACAGCCAGTCCATCCAAATGATCACG
TTAACAAATCACAGTCTTCGAACGACACCTTTCCAACAGCCATGCATATT
GCGCTTGCGCGCGAATTAAACTCCCGTCTTATTCCATCGCTCACTTCGCT
CGCCGACACTTTCGATCAGAAAGCTCAGCAATACAAACATGTCATCAAAA
TAGGTCGCACTCATTGTATGGACGCTGTCCCTCTCACCTACGCTCAGGAG
TTTTCTGCATACGTTCGACAGCTTCGTCAGGCTGTTTGTCGCATCCGCGC
CTGTTTGCCGGATGTTTACGAGCTGGCCATTGGCGGAACCGCCGTTGGAA
CCGGCTTGAATACCAGAGTAGGTTTTGCTGAAAAGGTCGCTGATAAGGTT
GCCGAATTAACTGGCTTGCCCTTTGTCACCGCCGAGAACAAGTTTGAGGC
GCTGGCTGCACATGATGCTGTCGTATTCACGAGTGGCGCTTTGAACACGG
CGGCTACTTCACTCATGAAGATTGCCAATGATATTCGATTGCTGGGATCC
GGGCCGCGATGTGGACTGGGCGAACTCATGCTGCCTGAAAATGAACCGGG
AAGTTCAATCATGCCTGGCAAAGTGAATCCAACGCAATGTGAGGCCGTCA
CCATGGCTTGTGCGCAGGTGATTGGAAATCACGTCGCAGTTACTGTTGGT
GGTACAAACGGCCACTTTGAGCTGAATGTTTTCAAACCAATGATGATTCA
TAACGTTCTTCACAGCGTTAGATTACTCAGTGATTGTGCTGTTTCGTTCG
AGAAGAACTGCATTCAAGGACTTCAGGTCAATGAAGACAGAGTTGCTCAG
CTTCTGAAGGAGAGCTTGATGCTGGTAACTGCGTTGAATCCTGTTATTGG
ATATGATAAAGCTGCACAGATTGCTAAAAAGGCTCACAAGGAAGGCAGTA
CACTACGGGAAGCTGCCGTGTCTCTTGGTTTTCTCACACCAGAGAAGTTC
GATGAGGCTGTTGTACCCGCTAATATGATCGGACCAAAGTAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:182712..184103+

>Ggra3461.t1 ID=Ggra3461.t1|Name=Ggra3461.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00000059_pilon:182712..184103+ (Gracilaria gracilis GNS1m male)
ATGTCGTACCGCATCGAGACCGATACCTTTGGCGAGATCAACGTTCCTTC
CGATCGCTACTGGGGAGCACAGACGCAGCGATCCATCTCCAACTTTGACA
TTTGCAAAGATACCGACCGTATGCCCCTTCCAGTCATTCACGCCTTCGGA
GTTCTCAAACAGGCCACTGCCTTCGCAAATCGCACCTACGGCCTGGATCA
ATCCATTGCCACCGCCATCGAAACTGCCGCTGCTGACGTTGCCGCCGGCA
AGCTTGACGACCACTTCCCGCTCGTTGTGTGGCAGACCGGCTCGGGAACC
CAATCCAACATGAACGTCAACGAAGTCATTTCTAACAGAGCCATTGAACT
TCTGGGAGGACAGCGTGGATCCAAACAGCCAGTCCATCCAAATGATCACG
TTAACAAATCACAGTCTTCGAACGACACCTTTCCAACAGCCATGCATATT
GCGCTTGCGCGCGAATTAAACTCCCGTCTTATTCCATCGCTCACTTCGCT
CGCCGACACTTTCGATCAGAAAGCTCAGCAATACAAACATGTCATCAAAA
TAGGTCGCACTCATTGTATGGACGCTGTCCCTCTCACCTACGCTCAGGAG
TTTTCTGCATACGTTCGACAGCTTCGTCAGGCTGTTTGTCGCATCCGCGC
CTGTTTGCCGGATGTTTACGAGCTGGCCATTGGCGGAACCGCCGTTGGAA
CCGGCTTGAATACCAGAGTAGGTTTTGCTGAAAAGGTCGCTGATAAGGTT
GCCGAATTAACTGGCTTGCCCTTTGTCACCGCCGAGAACAAGTTTGAGGC
GCTGGCTGCACATGATGCTGTCGTATTCACGAGTGGCGCTTTGAACACGG
CGGCTACTTCACTCATGAAGATTGCCAATGATATTCGATTGCTGGGATCC
GGGCCGCGATGTGGACTGGGCGAACTCATGCTGCCTGAAAATGAACCGGG
AAGTTCAATCATGCCTGGCAAAGTGAATCCAACGCAATGTGAGGCCGTCA
CCATGGCTTGTGCGCAGGTGATTGGAAATCACGTCGCAGTTACTGTTGGT
GGTACAAACGGCCACTTTGAGCTGAATGTTTTCAAACCAATGATGATTCA
TAACGTTCTTCACAGCGTTAGATTACTCAGTGATTGTGCTGTTTCGTTCG
AGAAGAACTGCATTCAAGGACTTCAGGTCAATGAAGACAGAGTTGCTCAG
CTTCTGAAGGAGAGCTTGATGCTGGTAACTGCGTTGAATCCTGTTATTGG
ATATGATAAAGCTGCACAGATTGCTAAAAAGGCTCACAAGGAAGGCAGTA
CACTACGGGAAGCTGCCGTGTCTCTTGGTTTTCTCACACCAGAGAAGTTC
GATGAGGCTGTTGTACCCGCTAATATGATCGGACCAAAGTAA
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