Ggra3460.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3460.t1
Unique NameGgra3460.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:180692..181789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3460Ggra3460Gracilaria gracilis GNS1m malegenetig00000059_pilon 180692..181789 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3460.t1.stop1Ggra3460.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 180692..180694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3460.t1.CDS1Ggra3460.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 180692..181789 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3460.t1.exon1Ggra3460.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 180692..181789 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3460.t1.start1Ggra3460.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 181787..181789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3460.t1Ggra3460.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 180692..181789 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3460.t1 ID=Ggra3460.t1|Name=Ggra3460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MKAAGAKKEMRMLVLVALAAITSSVSLFYALSRPALDVGRLESRLRLIEQ
YARASADVAPPPPPIVTAVGGSATQKRLVFYNRPPKTGSTTVRIAVKRAL
DEQSLRAAKCFNMIEWNEMGLKTIINRRDVDFYGCHTRMTKDRYDFVSRM
RGGNVTFITNTREPKNIILSAYLQANRDRKVADITDEKQMEEEIERYKKH
LESYPVDALYRYHGADVPLTSCPAEWLHEDAMRRVAERYEVVIDLSRPEE
STAMMEAVTGLRPDFTGHFNERTTDTSGKMLTALKNIDTSHKTCGNELVH
KVLMQQYNIIKDRLMQNRCFEEDGGSFALCEKAVLKKEEIMERNRQESYA
AREALVQKGGDATKE*
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spliced messenger RNA

>Ggra3460.t1 ID=Ggra3460.t1|Name=Ggra3460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000059_pilon:180692..181789- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCAGCCGGCGCCAAGAAGGAGATGCGAATGCTCGTGCTCGTCGC
ACTGGCCGCAATTACCTCCAGTGTATCACTGTTCTATGCTCTCTCCCGTC
CCGCTCTGGACGTCGGCCGTCTCGAATCACGCCTTCGCCTCATTGAACAG
TACGCTCGCGCCAGCGCTGATGTCGCACCGCCACCGCCGCCAATTGTCAC
CGCCGTGGGTGGCTCCGCAACACAAAAGCGGCTTGTATTTTATAATCGAC
CTCCCAAGACAGGCTCTACTACTGTCCGTATTGCCGTTAAACGAGCGCTG
GATGAACAGAGCTTGAGGGCTGCTAAGTGCTTCAATATGATTGAGTGGAA
TGAGATGGGGTTGAAGACTATCATCAATCGCCGCGATGTCGACTTTTATG
GATGTCATACCCGTATGACCAAGGATAGGTATGATTTTGTTAGCCGCATG
CGCGGTGGCAATGTCACCTTCATCACCAACACCAGGGAGCCAAAGAACAT
CATTCTTTCCGCTTACTTGCAGGCTAACCGTGATAGGAAAGTGGCAGACA
TTACCGACGAGAAGCAAATGGAGGAGGAAATCGAAAGGTATAAGAAACAC
CTTGAAAGCTATCCGGTCGATGCCTTGTATCGCTATCACGGTGCTGATGT
ACCGCTCACTTCCTGTCCGGCCGAGTGGCTTCATGAAGATGCTATGAGAA
GAGTAGCAGAACGCTACGAGGTCGTTATCGATCTCAGCCGACCAGAGGAA
TCCACCGCCATGATGGAAGCTGTCACAGGGCTTCGTCCGGACTTTACAGG
TCATTTCAATGAGCGCACCACGGATACATCTGGAAAGATGTTGACTGCCC
TGAAGAATATCGATACTTCTCACAAGACCTGTGGTAATGAACTTGTGCAC
AAGGTCCTCATGCAGCAGTACAACATTATCAAGGATCGACTGATGCAGAA
TCGATGCTTTGAAGAGGACGGTGGTAGCTTTGCTCTCTGTGAAAAGGCAG
TTTTGAAGAAGGAAGAGATTATGGAGAGAAACAGACAAGAAAGCTATGCG
GCACGTGAGGCTTTGGTGCAGAAGGGCGGTGACGCTACTAAGGAATAA
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protein sequence of Ggra3460.t1

>Ggra3460.t1 ID=Ggra3460.t1|Name=Ggra3460.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MKAAGAKKEMRMLVLVALAAITSSVSLFYALSRPALDVGRLESRLRLIEQ
YARASADVAPPPPPIVTAVGGSATQKRLVFYNRPPKTGSTTVRIAVKRAL
DEQSLRAAKCFNMIEWNEMGLKTIINRRDVDFYGCHTRMTKDRYDFVSRM
RGGNVTFITNTREPKNIILSAYLQANRDRKVADITDEKQMEEEIERYKKH
LESYPVDALYRYHGADVPLTSCPAEWLHEDAMRRVAERYEVVIDLSRPEE
STAMMEAVTGLRPDFTGHFNERTTDTSGKMLTALKNIDTSHKTCGNELVH
KVLMQQYNIIKDRLMQNRCFEEDGGSFALCEKAVLKKEEIMERNRQESYA
AREALVQKGGDATKE*
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mRNA from alignment at tig00000059_pilon:180692..181789-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3460.t1 ID=Ggra3460.t1|Name=Ggra3460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000059_pilon:180692..181789- (Gracilaria gracilis GNS1m male)
ATGAAAGCAGCCGGCGCCAAGAAGGAGATGCGAATGCTCGTGCTCGTCGC
ACTGGCCGCAATTACCTCCAGTGTATCACTGTTCTATGCTCTCTCCCGTC
CCGCTCTGGACGTCGGCCGTCTCGAATCACGCCTTCGCCTCATTGAACAG
TACGCTCGCGCCAGCGCTGATGTCGCACCGCCACCGCCGCCAATTGTCAC
CGCCGTGGGTGGCTCCGCAACACAAAAGCGGCTTGTATTTTATAATCGAC
CTCCCAAGACAGGCTCTACTACTGTCCGTATTGCCGTTAAACGAGCGCTG
GATGAACAGAGCTTGAGGGCTGCTAAGTGCTTCAATATGATTGAGTGGAA
TGAGATGGGGTTGAAGACTATCATCAATCGCCGCGATGTCGACTTTTATG
GATGTCATACCCGTATGACCAAGGATAGGTATGATTTTGTTAGCCGCATG
CGCGGTGGCAATGTCACCTTCATCACCAACACCAGGGAGCCAAAGAACAT
CATTCTTTCCGCTTACTTGCAGGCTAACCGTGATAGGAAAGTGGCAGACA
TTACCGACGAGAAGCAAATGGAGGAGGAAATCGAAAGGTATAAGAAACAC
CTTGAAAGCTATCCGGTCGATGCCTTGTATCGCTATCACGGTGCTGATGT
ACCGCTCACTTCCTGTCCGGCCGAGTGGCTTCATGAAGATGCTATGAGAA
GAGTAGCAGAACGCTACGAGGTCGTTATCGATCTCAGCCGACCAGAGGAA
TCCACCGCCATGATGGAAGCTGTCACAGGGCTTCGTCCGGACTTTACAGG
TCATTTCAATGAGCGCACCACGGATACATCTGGAAAGATGTTGACTGCCC
TGAAGAATATCGATACTTCTCACAAGACCTGTGGTAATGAACTTGTGCAC
AAGGTCCTCATGCAGCAGTACAACATTATCAAGGATCGACTGATGCAGAA
TCGATGCTTTGAAGAGGACGGTGGTAGCTTTGCTCTCTGTGAAAAGGCAG
TTTTGAAGAAGGAAGAGATTATGGAGAGAAACAGACAAGAAAGCTATGCG
GCACGTGAGGCTTTGGTGCAGAAGGGCGGTGACGCTACTAAGGAATAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:180692..181789-

>Ggra3460.t1 ID=Ggra3460.t1|Name=Ggra3460.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000059_pilon:180692..181789- (Gracilaria gracilis GNS1m male)
ATGAAAGCAGCCGGCGCCAAGAAGGAGATGCGAATGCTCGTGCTCGTCGC
ACTGGCCGCAATTACCTCCAGTGTATCACTGTTCTATGCTCTCTCCCGTC
CCGCTCTGGACGTCGGCCGTCTCGAATCACGCCTTCGCCTCATTGAACAG
TACGCTCGCGCCAGCGCTGATGTCGCACCGCCACCGCCGCCAATTGTCAC
CGCCGTGGGTGGCTCCGCAACACAAAAGCGGCTTGTATTTTATAATCGAC
CTCCCAAGACAGGCTCTACTACTGTCCGTATTGCCGTTAAACGAGCGCTG
GATGAACAGAGCTTGAGGGCTGCTAAGTGCTTCAATATGATTGAGTGGAA
TGAGATGGGGTTGAAGACTATCATCAATCGCCGCGATGTCGACTTTTATG
GATGTCATACCCGTATGACCAAGGATAGGTATGATTTTGTTAGCCGCATG
CGCGGTGGCAATGTCACCTTCATCACCAACACCAGGGAGCCAAAGAACAT
CATTCTTTCCGCTTACTTGCAGGCTAACCGTGATAGGAAAGTGGCAGACA
TTACCGACGAGAAGCAAATGGAGGAGGAAATCGAAAGGTATAAGAAACAC
CTTGAAAGCTATCCGGTCGATGCCTTGTATCGCTATCACGGTGCTGATGT
ACCGCTCACTTCCTGTCCGGCCGAGTGGCTTCATGAAGATGCTATGAGAA
GAGTAGCAGAACGCTACGAGGTCGTTATCGATCTCAGCCGACCAGAGGAA
TCCACCGCCATGATGGAAGCTGTCACAGGGCTTCGTCCGGACTTTACAGG
TCATTTCAATGAGCGCACCACGGATACATCTGGAAAGATGTTGACTGCCC
TGAAGAATATCGATACTTCTCACAAGACCTGTGGTAATGAACTTGTGCAC
AAGGTCCTCATGCAGCAGTACAACATTATCAAGGATCGACTGATGCAGAA
TCGATGCTTTGAAGAGGACGGTGGTAGCTTTGCTCTCTGTGAAAAGGCAG
TTTTGAAGAAGGAAGAGATTATGGAGAGAAACAGACAAGAAAGCTATGCG
GCACGTGAGGCTTTGGTGCAGAAGGGCGGTGACGCTACTAAGGAATAA
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