Ggra3458.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3458.t1
Unique NameGgra3458.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:176936..177676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3458Ggra3458Gracilaria gracilis GNS1m malegenetig00000059_pilon 176936..177676 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3458.t1.start1Ggra3458.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 176936..176938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3458.t1.CDS1Ggra3458.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 176936..177676 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3458.t1.exon1Ggra3458.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 176936..177676 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3458.t1.stop1Ggra3458.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 177674..177676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3458.t1Ggra3458.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 176936..177676 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3458.t1 ID=Ggra3458.t1|Name=Ggra3458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MGAAPTATTAEEAPARVRRQVPLAPAPARRGGALEPHQAPCTAEAMRTES
GCSIKRGASAAKSKRGKNYTEQEAMTLAKSWLIQKELWPKQKDAPFWHGV
QLRCGERGVQRSAASLKTVWSQMSRNGARYIEALQQLGCEQLPEQQLAAA
AMKLYVKLSNSGRRDGRRDGTALYLATQCLFTKHYKCASEHEPPALPEVS
RSDASRWSSMRPKRALAENSSQDEGDSLHWEPIRLSNWEPTERPTG*
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spliced messenger RNA

>Ggra3458.t1 ID=Ggra3458.t1|Name=Ggra3458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000059_pilon:176936..177676+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCGCCCCCACTGCCACCACCGCCGAGGAGGCGCCGGCGCGCGT
CCGCCGACAAGTGCCGCTCGCGCCCGCGCCCGCCAGAAGAGGCGGCGCGC
TCGAGCCACATCAGGCGCCGTGCACAGCAGAGGCGATGCGCACTGAGAGC
GGCTGCAGCATAAAGCGAGGCGCCAGCGCGGCGAAGAGCAAGCGCGGCAA
GAACTACACTGAACAGGAGGCCATGACGCTGGCGAAGAGCTGGCTGATAC
AAAAGGAGCTATGGCCAAAGCAGAAGGACGCGCCGTTCTGGCATGGCGTG
CAGCTACGTTGCGGCGAACGGGGCGTGCAGCGCAGCGCGGCGTCGCTCAA
GACCGTGTGGTCTCAGATGTCTCGCAACGGCGCGCGGTACATCGAGGCAC
TACAGCAGCTTGGCTGTGAACAGCTTCCGGAGCAGCAGTTGGCGGCGGCC
GCCATGAAACTATACGTGAAGCTGAGCAACAGCGGGCGACGCGACGGTAG
ACGCGACGGCACGGCTCTGTACCTCGCCACGCAGTGCCTCTTCACCAAGC
ACTACAAGTGCGCGTCGGAACATGAGCCGCCCGCGCTTCCAGAAGTATCG
CGGAGCGATGCGTCGCGCTGGTCGTCGATGCGACCGAAGCGCGCGCTGGC
GGAAAACAGCTCACAAGACGAAGGTGATTCGTTGCACTGGGAGCCGATCC
GACTGTCCAACTGGGAGCCGACCGAACGTCCAACTGGATGA
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protein sequence of Ggra3458.t1

>Ggra3458.t1 ID=Ggra3458.t1|Name=Ggra3458.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MGAAPTATTAEEAPARVRRQVPLAPAPARRGGALEPHQAPCTAEAMRTES
GCSIKRGASAAKSKRGKNYTEQEAMTLAKSWLIQKELWPKQKDAPFWHGV
QLRCGERGVQRSAASLKTVWSQMSRNGARYIEALQQLGCEQLPEQQLAAA
AMKLYVKLSNSGRRDGRRDGTALYLATQCLFTKHYKCASEHEPPALPEVS
RSDASRWSSMRPKRALAENSSQDEGDSLHWEPIRLSNWEPTERPTG*
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mRNA from alignment at tig00000059_pilon:176936..177676+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3458.t1 ID=Ggra3458.t1|Name=Ggra3458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000059_pilon:176936..177676+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCGCCCCCACTGCCACCACCGCCGAGGAGGCGCCGGCGCGCGT
CCGCCGACAAGTGCCGCTCGCGCCCGCGCCCGCCAGAAGAGGCGGCGCGC
TCGAGCCACATCAGGCGCCGTGCACAGCAGAGGCGATGCGCACTGAGAGC
GGCTGCAGCATAAAGCGAGGCGCCAGCGCGGCGAAGAGCAAGCGCGGCAA
GAACTACACTGAACAGGAGGCCATGACGCTGGCGAAGAGCTGGCTGATAC
AAAAGGAGCTATGGCCAAAGCAGAAGGACGCGCCGTTCTGGCATGGCGTG
CAGCTACGTTGCGGCGAACGGGGCGTGCAGCGCAGCGCGGCGTCGCTCAA
GACCGTGTGGTCTCAGATGTCTCGCAACGGCGCGCGGTACATCGAGGCAC
TACAGCAGCTTGGCTGTGAACAGCTTCCGGAGCAGCAGTTGGCGGCGGCC
GCCATGAAACTATACGTGAAGCTGAGCAACAGCGGGCGACGCGACGGTAG
ACGCGACGGCACGGCTCTGTACCTCGCCACGCAGTGCCTCTTCACCAAGC
ACTACAAGTGCGCGTCGGAACATGAGCCGCCCGCGCTTCCAGAAGTATCG
CGGAGCGATGCGTCGCGCTGGTCGTCGATGCGACCGAAGCGCGCGCTGGC
GGAAAACAGCTCACAAGACGAAGGTGATTCGTTGCACTGGGAGCCGATCC
GACTGTCCAACTGGGAGCCGACCGAACGTCCAACTGGATGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:176936..177676+

>Ggra3458.t1 ID=Ggra3458.t1|Name=Ggra3458.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000059_pilon:176936..177676+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCGCCCCCACTGCCACCACCGCCGAGGAGGCGCCGGCGCGCGT
CCGCCGACAAGTGCCGCTCGCGCCCGCGCCCGCCAGAAGAGGCGGCGCGC
TCGAGCCACATCAGGCGCCGTGCACAGCAGAGGCGATGCGCACTGAGAGC
GGCTGCAGCATAAAGCGAGGCGCCAGCGCGGCGAAGAGCAAGCGCGGCAA
GAACTACACTGAACAGGAGGCCATGACGCTGGCGAAGAGCTGGCTGATAC
AAAAGGAGCTATGGCCAAAGCAGAAGGACGCGCCGTTCTGGCATGGCGTG
CAGCTACGTTGCGGCGAACGGGGCGTGCAGCGCAGCGCGGCGTCGCTCAA
GACCGTGTGGTCTCAGATGTCTCGCAACGGCGCGCGGTACATCGAGGCAC
TACAGCAGCTTGGCTGTGAACAGCTTCCGGAGCAGCAGTTGGCGGCGGCC
GCCATGAAACTATACGTGAAGCTGAGCAACAGCGGGCGACGCGACGGTAG
ACGCGACGGCACGGCTCTGTACCTCGCCACGCAGTGCCTCTTCACCAAGC
ACTACAAGTGCGCGTCGGAACATGAGCCGCCCGCGCTTCCAGAAGTATCG
CGGAGCGATGCGTCGCGCTGGTCGTCGATGCGACCGAAGCGCGCGCTGGC
GGAAAACAGCTCACAAGACGAAGGTGATTCGTTGCACTGGGAGCCGATCC
GACTGTCCAACTGGGAGCCGACCGAACGTCCAACTGGATGA
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