Ggra3457.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3457.t1
Unique Name	Ggra3457.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	628

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:173153..175036 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28532.XP_010532119.1
PFAMs	DEAD,Helicase_C,zf-CCHC
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K13116
GOs	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071013,GO:0071704,GO:0090304,GO:0140098,GO:1901360,GO:1902494,GO:1990904
Evalue	4.24e-214
EggNOG OGs	KOG0341@1\|root,KOG0341@2759\|Eukaryota,37HIW@33090\|Viridiplantae,3G71W@35493\|Streptophyta,3HNBQ@3699\|Brassicales
EC	3.6.4.13
Description	DEAD-box protein abstrakt
COG category	A
BRITE	ko00000,ko01000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3457	Ggra3457	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 173153..175036 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3457.t1.stop1	Ggra3457.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 173153..173155 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3457.t1.CDS1	Ggra3457.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 173153..175036 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3457.t1.exon1	Ggra3457.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 173153..175036 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3457.t1.start1	Ggra3457.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 175034..175036 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3457.t1	Ggra3457.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 173153..175036 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:173153..175036-
coding sequence from alignment at tig00000059_pilon:173153..175036-

mRNA sequence

>Ggra3457.t1 ID=Ggra3457.t1|Name=Ggra3457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=628bp
MAASDDEHYVEYIPVKRRRADTARNVALLASRKGAKSLLQAAQTTLNSVA
PPKRPRPSHLAPTDSAPQCDANESATQPVFAPGRRSLLDDVARLHAGGMP
QKSEEQQIKESEAQVLAELARQPALKAVAELAHGVEYTEPMTTSWTPPRF
LRRAGDDHHKQMRDFHRIMVEGENVPPPCVSFREMKLPRAILQQLGEKGI
KHPSPIQMQGLPVALSGRDMIGIAFTGSGKTLVFTLPLVVLAWEMELRLP
FISNEGPVGMILAPSRELARQTFEIATEFCDTVHKLGGPPLRTFLAIGGT
RVDFDTIRRGIHILVATPGRLLDLLRKRRINLEVCRYVALDEADRLIDLG
FEEDIRAIFSFFTAQRQTLMFSATMPTKIQAFASSALVKPVVVNVGRAGA
ASLNITQHVEVVRPDARISRLLDTLQKTPPPTLIFCENKNDVDEIHEYLL
IKGVGAVSIHGGRDQEDRETSMRQFRAGSKDVLVATDVAAKGLDFPNIRH
VINYDMPKDIQTYVHRIGRTGRGDQTGTATTFLNHSDSSTLIGDLVQLLI
EAKQTVPESLYEIVPDLELNGLAAKEVGGVKGCAYCGGLSHRVQECPTLE
SEKMKALVGGTKGGMEGFNRGGYGSEW*

spliced messenger RNA

>Ggra3457.t1 ID=Ggra3457.t1|Name=Ggra3457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00000059_pilon:173153..175036- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTTCAGACGACGAGCACTATGTCGAATACATCCCCGTCAAGCG
TCGTCGCGCCGACACAGCGCGCAACGTCGCCCTTCTCGCCTCCCGAAAGG
GCGCCAAGTCGCTGCTACAAGCCGCTCAAACCACCCTGAATTCCGTCGCC
CCTCCAAAGAGACCGCGCCCGTCGCACCTTGCGCCGACAGACTCCGCTCC
ACAGTGCGATGCAAATGAGTCCGCTACACAACCAGTTTTCGCACCAGGTC
GCCGCTCGCTTCTGGATGACGTTGCGCGCTTGCATGCTGGAGGCATGCCT
CAGAAGAGTGAGGAGCAACAGATCAAGGAATCTGAAGCTCAGGTGCTTGC
AGAGCTCGCTCGACAGCCGGCTCTTAAGGCCGTTGCCGAGCTTGCGCATG
GAGTTGAGTACACCGAACCTATGACCACTTCATGGACTCCGCCACGGTTT
TTGCGCCGTGCTGGGGATGATCATCACAAGCAGATGAGGGACTTTCATCG
TATCATGGTGGAGGGAGAGAATGTACCCCCTCCCTGTGTCTCATTTCGCG
AGATGAAGCTGCCGCGTGCCATCTTACAACAGCTTGGCGAAAAGGGTATT
AAACACCCCTCACCCATTCAGATGCAGGGCTTGCCGGTTGCTCTAAGCGG
TAGAGACATGATTGGTATTGCTTTCACAGGCTCTGGCAAAACGCTTGTTT
TCACACTTCCCCTCGTCGTGCTTGCGTGGGAAATGGAACTTCGACTTCCC
TTTATTTCGAATGAGGGGCCTGTCGGAATGATTCTTGCTCCCTCTCGAGA
GCTGGCTCGCCAGACCTTTGAAATCGCCACTGAGTTTTGCGACACGGTAC
ACAAACTTGGTGGTCCCCCTCTTCGCACTTTTCTCGCTATCGGTGGTACC
CGTGTCGACTTTGATACCATTCGAAGAGGTATACATATTTTGGTTGCTAC
TCCTGGCCGATTGTTAGACCTCCTTCGGAAACGAAGAATCAACCTCGAAG
TATGTCGTTATGTGGCGTTGGATGAGGCTGATCGTCTCATAGATCTTGGC
TTTGAAGAGGATATAAGGGCCATCTTCAGTTTCTTTACGGCGCAACGGCA
GACACTCATGTTTTCTGCAACCATGCCTACCAAGATTCAAGCGTTTGCGT
CTTCTGCTTTGGTCAAGCCCGTTGTCGTTAACGTAGGCAGGGCTGGCGCT
GCGTCGCTCAACATCACGCAGCATGTGGAGGTTGTTCGCCCTGATGCTCG
TATTTCTCGCTTATTGGACACTTTGCAGAAAACTCCTCCGCCAACACTCA
TTTTCTGTGAGAACAAGAACGATGTAGACGAGATTCACGAGTATTTGCTC
ATCAAAGGCGTCGGTGCTGTCTCTATTCATGGTGGACGTGACCAAGAAGA
CAGAGAAACTTCAATGCGTCAATTCCGAGCTGGGTCAAAGGACGTGCTGG
TTGCTACTGACGTTGCTGCAAAAGGTCTGGACTTTCCGAATATCCGGCAT
GTTATCAACTATGATATGCCCAAAGACATTCAAACATATGTACATAGAAT
TGGCCGAACAGGGCGCGGAGATCAAACAGGAACAGCAACCACATTTCTGA
ACCATTCGGATAGCTCGACTCTCATCGGAGACTTGGTACAATTATTGATT
GAGGCGAAACAGACTGTCCCAGAAAGCTTGTATGAGATTGTGCCAGATCT
TGAGCTCAATGGACTCGCGGCGAAAGAAGTTGGTGGGGTTAAGGGCTGTG
CATATTGCGGTGGTCTTAGTCACAGAGTTCAAGAATGTCCGACACTAGAG
TCCGAGAAAATGAAGGCACTCGTCGGTGGCACAAAGGGCGGAATGGAAGG
ATTTAACCGAGGTGGATATGGAAGCGAGTGGTAA

protein sequence of Ggra3457.t1

>Ggra3457.t1 ID=Ggra3457.t1|Name=Ggra3457.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=628bp
MAASDDEHYVEYIPVKRRRADTARNVALLASRKGAKSLLQAAQTTLNSVA
PPKRPRPSHLAPTDSAPQCDANESATQPVFAPGRRSLLDDVARLHAGGMP
QKSEEQQIKESEAQVLAELARQPALKAVAELAHGVEYTEPMTTSWTPPRF
LRRAGDDHHKQMRDFHRIMVEGENVPPPCVSFREMKLPRAILQQLGEKGI
KHPSPIQMQGLPVALSGRDMIGIAFTGSGKTLVFTLPLVVLAWEMELRLP
FISNEGPVGMILAPSRELARQTFEIATEFCDTVHKLGGPPLRTFLAIGGT
RVDFDTIRRGIHILVATPGRLLDLLRKRRINLEVCRYVALDEADRLIDLG
FEEDIRAIFSFFTAQRQTLMFSATMPTKIQAFASSALVKPVVVNVGRAGA
ASLNITQHVEVVRPDARISRLLDTLQKTPPPTLIFCENKNDVDEIHEYLL
IKGVGAVSIHGGRDQEDRETSMRQFRAGSKDVLVATDVAAKGLDFPNIRH
VINYDMPKDIQTYVHRIGRTGRGDQTGTATTFLNHSDSSTLIGDLVQLLI
EAKQTVPESLYEIVPDLELNGLAAKEVGGVKGCAYCGGLSHRVQECPTLE
SEKMKALVGGTKGGMEGFNRGGYGSEW*

mRNA from alignment at tig00000059_pilon:173153..175036-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3457.t1 ID=Ggra3457.t1|Name=Ggra3457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00000059_pilon:173153..175036- (Gracilaria gracilis GNS1m male)
ATGGCCGCTTCAGACGACGAGCACTATGTCGAATACATCCCCGTCAAGCG
TCGTCGCGCCGACACAGCGCGCAACGTCGCCCTTCTCGCCTCCCGAAAGG
GCGCCAAGTCGCTGCTACAAGCCGCTCAAACCACCCTGAATTCCGTCGCC
CCTCCAAAGAGACCGCGCCCGTCGCACCTTGCGCCGACAGACTCCGCTCC
ACAGTGCGATGCAAATGAGTCCGCTACACAACCAGTTTTCGCACCAGGTC
GCCGCTCGCTTCTGGATGACGTTGCGCGCTTGCATGCTGGAGGCATGCCT
CAGAAGAGTGAGGAGCAACAGATCAAGGAATCTGAAGCTCAGGTGCTTGC
AGAGCTCGCTCGACAGCCGGCTCTTAAGGCCGTTGCCGAGCTTGCGCATG
GAGTTGAGTACACCGAACCTATGACCACTTCATGGACTCCGCCACGGTTT
TTGCGCCGTGCTGGGGATGATCATCACAAGCAGATGAGGGACTTTCATCG
TATCATGGTGGAGGGAGAGAATGTACCCCCTCCCTGTGTCTCATTTCGCG
AGATGAAGCTGCCGCGTGCCATCTTACAACAGCTTGGCGAAAAGGGTATT
AAACACCCCTCACCCATTCAGATGCAGGGCTTGCCGGTTGCTCTAAGCGG
TAGAGACATGATTGGTATTGCTTTCACAGGCTCTGGCAAAACGCTTGTTT
TCACACTTCCCCTCGTCGTGCTTGCGTGGGAAATGGAACTTCGACTTCCC
TTTATTTCGAATGAGGGGCCTGTCGGAATGATTCTTGCTCCCTCTCGAGA
GCTGGCTCGCCAGACCTTTGAAATCGCCACTGAGTTTTGCGACACGGTAC
ACAAACTTGGTGGTCCCCCTCTTCGCACTTTTCTCGCTATCGGTGGTACC
CGTGTCGACTTTGATACCATTCGAAGAGGTATACATATTTTGGTTGCTAC
TCCTGGCCGATTGTTAGACCTCCTTCGGAAACGAAGAATCAACCTCGAAG
TATGTCGTTATGTGGCGTTGGATGAGGCTGATCGTCTCATAGATCTTGGC
TTTGAAGAGGATATAAGGGCCATCTTCAGTTTCTTTACGGCGCAACGGCA
GACACTCATGTTTTCTGCAACCATGCCTACCAAGATTCAAGCGTTTGCGT
CTTCTGCTTTGGTCAAGCCCGTTGTCGTTAACGTAGGCAGGGCTGGCGCT
GCGTCGCTCAACATCACGCAGCATGTGGAGGTTGTTCGCCCTGATGCTCG
TATTTCTCGCTTATTGGACACTTTGCAGAAAACTCCTCCGCCAACACTCA
TTTTCTGTGAGAACAAGAACGATGTAGACGAGATTCACGAGTATTTGCTC
ATCAAAGGCGTCGGTGCTGTCTCTATTCATGGTGGACGTGACCAAGAAGA
CAGAGAAACTTCAATGCGTCAATTCCGAGCTGGGTCAAAGGACGTGCTGG
TTGCTACTGACGTTGCTGCAAAAGGTCTGGACTTTCCGAATATCCGGCAT
GTTATCAACTATGATATGCCCAAAGACATTCAAACATATGTACATAGAAT
TGGCCGAACAGGGCGCGGAGATCAAACAGGAACAGCAACCACATTTCTGA
ACCATTCGGATAGCTCGACTCTCATCGGAGACTTGGTACAATTATTGATT
GAGGCGAAACAGACTGTCCCAGAAAGCTTGTATGAGATTGTGCCAGATCT
TGAGCTCAATGGACTCGCGGCGAAAGAAGTTGGTGGGGTTAAGGGCTGTG
CATATTGCGGTGGTCTTAGTCACAGAGTTCAAGAATGTCCGACACTAGAG
TCCGAGAAAATGAAGGCACTCGTCGGTGGCACAAAGGGCGGAATGGAAGG
ATTTAACCGAGGTGGATATGGAAGCGAGTGGTAA

Coding sequence (CDS) from alignment at tig00000059_pilon:173153..175036-

>Ggra3457.t1 ID=Ggra3457.t1|Name=Ggra3457.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1884bp|location=Sequence derived from alignment at tig00000059_pilon:173153..175036- (Gracilaria gracilis GNS1m male)
ATGGCCGCTTCAGACGACGAGCACTATGTCGAATACATCCCCGTCAAGCG
TCGTCGCGCCGACACAGCGCGCAACGTCGCCCTTCTCGCCTCCCGAAAGG
GCGCCAAGTCGCTGCTACAAGCCGCTCAAACCACCCTGAATTCCGTCGCC
CCTCCAAAGAGACCGCGCCCGTCGCACCTTGCGCCGACAGACTCCGCTCC
ACAGTGCGATGCAAATGAGTCCGCTACACAACCAGTTTTCGCACCAGGTC
GCCGCTCGCTTCTGGATGACGTTGCGCGCTTGCATGCTGGAGGCATGCCT
CAGAAGAGTGAGGAGCAACAGATCAAGGAATCTGAAGCTCAGGTGCTTGC
AGAGCTCGCTCGACAGCCGGCTCTTAAGGCCGTTGCCGAGCTTGCGCATG
GAGTTGAGTACACCGAACCTATGACCACTTCATGGACTCCGCCACGGTTT
TTGCGCCGTGCTGGGGATGATCATCACAAGCAGATGAGGGACTTTCATCG
TATCATGGTGGAGGGAGAGAATGTACCCCCTCCCTGTGTCTCATTTCGCG
AGATGAAGCTGCCGCGTGCCATCTTACAACAGCTTGGCGAAAAGGGTATT
AAACACCCCTCACCCATTCAGATGCAGGGCTTGCCGGTTGCTCTAAGCGG
TAGAGACATGATTGGTATTGCTTTCACAGGCTCTGGCAAAACGCTTGTTT
TCACACTTCCCCTCGTCGTGCTTGCGTGGGAAATGGAACTTCGACTTCCC
TTTATTTCGAATGAGGGGCCTGTCGGAATGATTCTTGCTCCCTCTCGAGA
GCTGGCTCGCCAGACCTTTGAAATCGCCACTGAGTTTTGCGACACGGTAC
ACAAACTTGGTGGTCCCCCTCTTCGCACTTTTCTCGCTATCGGTGGTACC
CGTGTCGACTTTGATACCATTCGAAGAGGTATACATATTTTGGTTGCTAC
TCCTGGCCGATTGTTAGACCTCCTTCGGAAACGAAGAATCAACCTCGAAG
TATGTCGTTATGTGGCGTTGGATGAGGCTGATCGTCTCATAGATCTTGGC
TTTGAAGAGGATATAAGGGCCATCTTCAGTTTCTTTACGGCGCAACGGCA
GACACTCATGTTTTCTGCAACCATGCCTACCAAGATTCAAGCGTTTGCGT
CTTCTGCTTTGGTCAAGCCCGTTGTCGTTAACGTAGGCAGGGCTGGCGCT
GCGTCGCTCAACATCACGCAGCATGTGGAGGTTGTTCGCCCTGATGCTCG
TATTTCTCGCTTATTGGACACTTTGCAGAAAACTCCTCCGCCAACACTCA
TTTTCTGTGAGAACAAGAACGATGTAGACGAGATTCACGAGTATTTGCTC
ATCAAAGGCGTCGGTGCTGTCTCTATTCATGGTGGACGTGACCAAGAAGA
CAGAGAAACTTCAATGCGTCAATTCCGAGCTGGGTCAAAGGACGTGCTGG
TTGCTACTGACGTTGCTGCAAAAGGTCTGGACTTTCCGAATATCCGGCAT
GTTATCAACTATGATATGCCCAAAGACATTCAAACATATGTACATAGAAT
TGGCCGAACAGGGCGCGGAGATCAAACAGGAACAGCAACCACATTTCTGA
ACCATTCGGATAGCTCGACTCTCATCGGAGACTTGGTACAATTATTGATT
GAGGCGAAACAGACTGTCCCAGAAAGCTTGTATGAGATTGTGCCAGATCT
TGAGCTCAATGGACTCGCGGCGAAAGAAGTTGGTGGGGTTAAGGGCTGTG
CATATTGCGGTGGTCTTAGTCACAGAGTTCAAGAATGTCCGACACTAGAG
TCCGAGAAAATGAAGGCACTCGTCGGTGGCACAAAGGGCGGAATGGAAGG
ATTTAACCGAGGTGGATATGGAAGCGAGTGGTAA