Ggra3456.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3456.t1
Unique Name	Ggra3456.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	299

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:170063..170959 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2711.XP_006482106.1
PFAMs	FoP_duplication,RRM_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12881
KEGG Pathway	ko03013,ko03015,ko03040,ko05168,map03013,map03015,map03040,map05168
KEGG Module	M00406,M00430
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363
Evalue	3.02e-13
EggNOG OGs	KOG0533@1\|root,KOG0533@2759\|Eukaryota,37MMS@33090\|Viridiplantae,3GG6X@35493\|Streptophyta
Description	THO complex subunit
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3456	Ggra3456	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 170063..170959 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3456.t1.start1	Ggra3456.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 170063..170065 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3456.t1.CDS1	Ggra3456.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 170063..170959 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3456.t1.exon1	Ggra3456.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 170063..170959 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3456.t1.stop1	Ggra3456.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 170957..170959 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3456.t1	Ggra3456.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 170063..170959 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:170063..170959+
coding sequence from alignment at tig00000059_pilon:170063..170959+

mRNA sequence

>Ggra3456.t1 ID=Ggra3456.t1|Name=Ggra3456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=299bp
MLNIDRPLDDIIKESMQAKRADRATRRRDQTSKRKNVAPAPKPRLTPAAA
TNNAAAAPPAERSPDKDTSLPAAKARRPISKKRKNRRKPNASAPTNSDAQ
NNANGRTDPAPSSSVADVAPHYLSASAQRRSNGVKVVVSNLHPGVTQSDI
AELFETVGPLKSAVLPRYANGTSSCEAEVIFENMPDALEAIKRYNLVPLD
NQPLQITLVTTRSKNGRENNPSKKSQSMDDDYRDRSRSPDNENFERKESP
QFADRNRNGQQGRRTRRRNRRQYRAPATGANQERDDRDRRDDRDGYAD*

spliced messenger RNA

>Ggra3456.t1 ID=Ggra3456.t1|Name=Ggra3456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000059_pilon:170063..170959+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAACATCGACCGCCCCCTCGACGACATCATCAAGGAGTCCATGCA
GGCCAAGCGTGCCGACCGCGCAACCCGCCGTCGTGACCAAACTTCCAAAC
GCAAGAAcgtcgcccccgcccccaagccacgcctcactcccgccgccgcc
accaacaacgccgccgctgccCCACCAGCAGAGCGCAGTCCGGACAAGGA
CACCAGCCTCCCGGCCGCCAAGGCCCGCCGCCCCATCTCCAAGAAGCGTA
AGAACCGTCGCAAGCCCAACGCTTCTGCCCCGACCAATTCCGACGCCCAG
AACAACGCCAACGGACGTACGGATCCAGCGCCGTCGTCGTCTGTCGCCGA
CGTCGCGCCGCACTACCTCTCGGCCTCGGCGCAGCGACGCTCCAATGGTG
TCAAGGTTGTTGTGTCCAACCTGCACCCCGGTGTCACACAGAGCGATATT
GCCGAGCTCTTTGAGACCGTCGGCCCTCTCAAGAGTGCCGTGCTGCCGCG
CTATGCAAACGGCACCTCCTCCTGTGAAGCCGAAGTGATTTTCGAGAACA
TGCCGGATGCATTGGAGGCCATTAAGAGGTATAACCTCGTGCCTCTGGAT
AACCAGCCGTTGCAGATCACCCTGGTCACCACGCGCTCCAAGAACGGTAG
GGAGAACAACCCGTCGAAGAAGTCTCAGTCAATGGATGACGACTACCGTG
ATCGCTCCCGCTCTCCGGACAACGAGAACTTCGAACGCAAGGAGTCTCCC
CAGTTTGCGGATcgcaaccgcaacggccaacagggccgccgcactcgccg
ccgcaaccgGAGGCAGTACAGGGCGCCGGCAACGGGCGCCAACCAGGAGC
GCGACGATCGCGATCGTCGTGATGATCGTGATGGCTACGCTGACTAG

protein sequence of Ggra3456.t1

>Ggra3456.t1 ID=Ggra3456.t1|Name=Ggra3456.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=299bp
MLNIDRPLDDIIKESMQAKRADRATRRRDQTSKRKNVAPAPKPRLTPAAA
TNNAAAAPPAERSPDKDTSLPAAKARRPISKKRKNRRKPNASAPTNSDAQ
NNANGRTDPAPSSSVADVAPHYLSASAQRRSNGVKVVVSNLHPGVTQSDI
AELFETVGPLKSAVLPRYANGTSSCEAEVIFENMPDALEAIKRYNLVPLD
NQPLQITLVTTRSKNGRENNPSKKSQSMDDDYRDRSRSPDNENFERKESP
QFADRNRNGQQGRRTRRRNRRQYRAPATGANQERDDRDRRDDRDGYAD*

mRNA from alignment at tig00000059_pilon:170063..170959+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3456.t1 ID=Ggra3456.t1|Name=Ggra3456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000059_pilon:170063..170959+ (Gracilaria gracilis GNS1m male)
ATGCTTAACATCGACCGCCCCCTCGACGACATCATCAAGGAGTCCATGCA
GGCCAAGCGTGCCGACCGCGCAACCCGCCGTCGTGACCAAACTTCCAAAC
GCAAGAAcgtcgcccccgcccccaagccacgcctcactcccgccgccgcc
accaacaacgccgccgctgccCCACCAGCAGAGCGCAGTCCGGACAAGGA
CACCAGCCTCCCGGCCGCCAAGGCCCGCCGCCCCATCTCCAAGAAGCGTA
AGAACCGTCGCAAGCCCAACGCTTCTGCCCCGACCAATTCCGACGCCCAG
AACAACGCCAACGGACGTACGGATCCAGCGCCGTCGTCGTCTGTCGCCGA
CGTCGCGCCGCACTACCTCTCGGCCTCGGCGCAGCGACGCTCCAATGGTG
TCAAGGTTGTTGTGTCCAACCTGCACCCCGGTGTCACACAGAGCGATATT
GCCGAGCTCTTTGAGACCGTCGGCCCTCTCAAGAGTGCCGTGCTGCCGCG
CTATGCAAACGGCACCTCCTCCTGTGAAGCCGAAGTGATTTTCGAGAACA
TGCCGGATGCATTGGAGGCCATTAAGAGGTATAACCTCGTGCCTCTGGAT
AACCAGCCGTTGCAGATCACCCTGGTCACCACGCGCTCCAAGAACGGTAG
GGAGAACAACCCGTCGAAGAAGTCTCAGTCAATGGATGACGACTACCGTG
ATCGCTCCCGCTCTCCGGACAACGAGAACTTCGAACGCAAGGAGTCTCCC
CAGTTTGCGGATcgcaaccgcaacggccaacagggccgccgcactcgccg
ccgcaaccgGAGGCAGTACAGGGCGCCGGCAACGGGCGCCAACCAGGAGC
GCGACGATCGCGATCGTCGTGATGATCGTGATGGCTACGCTGACTAG

Coding sequence (CDS) from alignment at tig00000059_pilon:170063..170959+

>Ggra3456.t1 ID=Ggra3456.t1|Name=Ggra3456.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00000059_pilon:170063..170959+ (Gracilaria gracilis GNS1m male)
ATGCTTAACATCGACCGCCCCCTCGACGACATCATCAAGGAGTCCATGCA
GGCCAAGCGTGCCGACCGCGCAACCCGCCGTCGTGACCAAACTTCCAAAC
GCAAGAAcgtcgcccccgcccccaagccacgcctcactcccgccgccgcc
accaacaacgccgccgctgccCCACCAGCAGAGCGCAGTCCGGACAAGGA
CACCAGCCTCCCGGCCGCCAAGGCCCGCCGCCCCATCTCCAAGAAGCGTA
AGAACCGTCGCAAGCCCAACGCTTCTGCCCCGACCAATTCCGACGCCCAG
AACAACGCCAACGGACGTACGGATCCAGCGCCGTCGTCGTCTGTCGCCGA
CGTCGCGCCGCACTACCTCTCGGCCTCGGCGCAGCGACGCTCCAATGGTG
TCAAGGTTGTTGTGTCCAACCTGCACCCCGGTGTCACACAGAGCGATATT
GCCGAGCTCTTTGAGACCGTCGGCCCTCTCAAGAGTGCCGTGCTGCCGCG
CTATGCAAACGGCACCTCCTCCTGTGAAGCCGAAGTGATTTTCGAGAACA
TGCCGGATGCATTGGAGGCCATTAAGAGGTATAACCTCGTGCCTCTGGAT
AACCAGCCGTTGCAGATCACCCTGGTCACCACGCGCTCCAAGAACGGTAG
GGAGAACAACCCGTCGAAGAAGTCTCAGTCAATGGATGACGACTACCGTG
ATCGCTCCCGCTCTCCGGACAACGAGAACTTCGAACGCAAGGAGTCTCCC
CAGTTTGCGGATcgcaaccgcaacggccaacagggccgccgcactcgccg
ccgcaaccgGAGGCAGTACAGGGCGCCGGCAACGGGCGCCAACCAGGAGC
GCGACGATCGCGATCGTCGTGATGATCGTGATGGCTACGCTGACTAG