Ggra3451.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3451.t1
Unique NameGgra3451.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length484
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:155407..157047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3451Ggra3451Gracilaria gracilis GNS1m malegenetig00000059_pilon 155407..157047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3451.t1Ggra3451.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 155407..157047 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3451.t1.stop1Ggra3451.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 155407..155409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3451.t1.CDS1Ggra3451.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 155407..155553 -
Ggra3451.t1.CDS2Ggra3451.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 155743..157047 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3451.t1.exon1Ggra3451.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 155407..155553 -
Ggra3451.t1.exon2Ggra3451.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 155743..157047 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3451.t1.intron1Ggra3451.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 155554..155742 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3451.t1.start1Ggra3451.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 157045..157047 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3451.t1 ID=Ggra3451.t1|Name=Ggra3451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=484bp
MYSRISLLLLLLLPVAVAFPAQPSFNVLHPRHIHQTFLQLKARRIRHATV
KFASKVLSADAQLTVSARLGLAFEPCSASDECQAERSCVQLAGDTSGPVE
LADCDAGLCFCADMDGCSSVDDCLTGESCAPGGTCVSNSFVPGAAPADEV
DPTLGLNLDPCESIADCQNPRNCVQFVGGDFGQCAGPNCFCVRRDPSCTS
TSECSQGESCTQREGSNNAICISETAIINGEATEEEIDEIPDTAPELPPM
TDMTPATPVATVPGDMDTPDAEETTDTDDTPDVLPVPVPGTPEEPATTAP
LTTATPATTAPPAPTVPAPTVPATTVPTPTVPATTVPATTEGDPEETEPE
QADREPVVVLPGADGASVSPDTEEGEEVVPSDTVVDAGPTEEIMGEDGEV
TATPGEEIIDPDVTVTPDADGEFEDELGPTPSPEEIMKVNSPRYRRAARV
DSHTGGLSFTAFAARYETTAEEHLLRSFVRMGL*
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spliced messenger RNA

>Ggra3451.t1 ID=Ggra3451.t1|Name=Ggra3451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000059_pilon:155407..157047- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTCCCGGATCTCCCTCCTTCTCCTCCTTCTTCTCCCTGTCGCTGT
CGCGTTCCCCGCACAGCCGTCTTTCAACGTGCTCCACCCCCGTCACATCC
ACCAGACCTTCCTTCAACTCAAGGCGCGTCGCATCCGTCATGCAACCGTC
AAGTTCGCCTCCAAAGTGCTGTCAGCAGATGCTCAGCTCACCGTCTCGGC
CCGTCTCGGCCTGGCCTTCGAGCCCTGTTCCGCCTCGGATGAGTGTCAGG
CAGAGCGATCGTGCGTGCAACTGGCCGGCGACACCTCCGGTCCCGTCGAG
CTCGCTGACTGTGATGCCGGCCTTTGCTTCTGTGCTGACATGGACGGATG
CTCGTCTGTAGATGATTGTCTGACCGGAGAGAGCTGTGCCCCAGGTGGCA
CATGTGTGTCCAACTCCTTTGTCCCGGGTGCTGCCCCGGCCGATGAAGTG
GACCCTACGTTGGGACTCAACTTGGATCCGTGTGAATCTATCGCAGATTG
CCAAAACCCTCGTAACTGCGTTCAGTTTGTAGGCGGAGACTTCGGTCAGT
GTGCCGGGCCCAACTGCTTCTGTGTCCGACGCGATCCCAGCTGTACCTCC
ACGTCCGAGTGCTCGCAGGGTGAATCGTGTACGCAGAGAGAGGGATCAAA
TAATGCAATTTGCATTTCCGAGACCGCTATCATTAACGGCGAAGCAACCG
AGGAGGAGATCGATGAGATTCCTGACACTGCACCTGAGCTTCCGCCCATG
ACGGATATGACACCCGCGACCCCCGTCGCCACCGTTCCCGGTGATATGGA
CACTCCGGATGCCGAGGAAACCACGGACACAGACGACACCCCAGATGTGT
TGCCCGTTCCAGTCCCGGGTACCCCTGAGGAGCCTGCTACCACGGCGCCT
CTCACAACTGCAACCCCTGCCACAACGGCACCCCCTGCCCCTACGGTGCC
TGCCCCTACGGTGCCTGCCACTACGGTGCCTACCCCTACGGTGCCTGCCA
CTACGGTGCCTGCCACCACGGAAGGGGACCCGGAAGAAACTGAACCGGAA
CAAGCTGACAGGGAGCCTGTTGTCGTTTTGCCAGGTGCTGATGGTGCTTC
GGTGTCGCCGGACACTGAGGAAGGAGAAGAGGTTGTGCCGTCAGATACCG
TTGTCGATGCAGGTCCGACCGAGGAGATTATGGGAGAGGATGGTGAGGTT
ACTGCCACCCCTGGTGAAGAGATTATTGATCCGGACGTTACGGTCACCCC
TGATGCGGATGGTGAGTTTGAAGATGAGCTAGGACCAACACCCTCCCCTG
AGGAAATCATGAAGGTGAATAGTCCTCGTTACCGACGTGCCGCCAGAGTT
GATTCTCATACCGGCGGACTCAGCTTCACTGCATTTGCGGCAAGGTATGA
GACAACCGCTGAGGAACATCTGCTGCGCTCATTTGTACGCATGGGATTGT
AA
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protein sequence of Ggra3451.t1

>Ggra3451.t1 ID=Ggra3451.t1|Name=Ggra3451.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=484bp
MYSRISLLLLLLLPVAVAFPAQPSFNVLHPRHIHQTFLQLKARRIRHATV
KFASKVLSADAQLTVSARLGLAFEPCSASDECQAERSCVQLAGDTSGPVE
LADCDAGLCFCADMDGCSSVDDCLTGESCAPGGTCVSNSFVPGAAPADEV
DPTLGLNLDPCESIADCQNPRNCVQFVGGDFGQCAGPNCFCVRRDPSCTS
TSECSQGESCTQREGSNNAICISETAIINGEATEEEIDEIPDTAPELPPM
TDMTPATPVATVPGDMDTPDAEETTDTDDTPDVLPVPVPGTPEEPATTAP
LTTATPATTAPPAPTVPAPTVPATTVPTPTVPATTVPATTEGDPEETEPE
QADREPVVVLPGADGASVSPDTEEGEEVVPSDTVVDAGPTEEIMGEDGEV
TATPGEEIIDPDVTVTPDADGEFEDELGPTPSPEEIMKVNSPRYRRAARV
DSHTGGLSFTAFAARYETTAEEHLLRSFVRMGL*
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mRNA from alignment at tig00000059_pilon:155407..157047-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3451.t1 ID=Ggra3451.t1|Name=Ggra3451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000059_pilon:155407..157047- (Gracilaria gracilis GNS1m male)
ATGTATTCCCGGATCTCCCTCCTTCTCCTCCTTCTTCTCCCTGTCGCTGT
CGCGTTCCCCGCACAGCCGTCTTTCAACGTGCTCCACCCCCGTCACATCC
ACCAGACCTTCCTTCAACTCAAGGCGCGTCGCATCCGTCATGCAACCGTC
AAGTTCGCCTCCAAAGTGCTGTCAGCAGATGCTCAGCTCACCGTCTCGGC
CCGTCTCGGCCTGGCCTTCGAGCCCTGTTCCGCCTCGGATGAGTGTCAGG
CAGAGCGATCGTGCGTGCAACTGGCCGGCGACACCTCCGGTCCCGTCGAG
CTCGCTGACTGTGATGCCGGCCTTTGCTTCTGTGCTGACATGGACGGATG
CTCGTCTGTAGATGATTGTCTGACCGGAGAGAGCTGTGCCCCAGGTGGCA
CATGTGTGTCCAACTCCTTTGTCCCGGGTGCTGCCCCGGCCGATGAAGTG
GACCCTACGTTGGGACTCAACTTGGATCCGTGTGAATCTATCGCAGATTG
CCAAAACCCTCGTAACTGCGTTCAGTTTGTAGGCGGAGACTTCGGTCAGT
GTGCCGGGCCCAACTGCTTCTGTGTCCGACGCGATCCCAGCTGTACCTCC
ACGTCCGAGTGCTCGCAGGGTGAATCGTGTACGCAGAGAGAGGGATCAAA
TAATGCAATTTGCATTTCCGAGACCGCTATCATTAACGGCGAAGCAACCG
AGGAGGAGATCGATGAGATTCCTGACACTGCACCTGAGCTTCCGCCCATG
ACGGATATGACACCCGCGACCCCCGTCGCCACCGTTCCCGGTGATATGGA
CACTCCGGATGCCGAGGAAACCACGGACACAGACGACACCCCAGATGTGT
TGCCCGTTCCAGTCCCGGGTACCCCTGAGGAGCCTGCTACCACGGCGCCT
CTCACAACTGCAACCCCTGCCACAACGGCACCCCCTGCCCCTACGGTGCC
TGCCCCTACGGTGCCTGCCACTACGGTGCCTACCCCTACGGTGCCTGCCA
CTACGGTGCCTGCCACCACGGAAGGGGACCCGGAAGAAACTGAACCGGAA
CAAGCTGACAGGGAGCCTGTTGTCGTTTTGCCAGGTGCTGATGGTGCTTC
GGTGTCGCCGGACACTGAGGAAGGAGAAGAGGTTGTGCCGTCAGATACCG
TTGTCGATGCAGGTCCGACCGAGGAGATTATGGGAGAGGATGGTGAGGTT
ACTGCCACCCCTGGTGAAGAGATTATTGATCCGGACGTTACGGTCACCCC
TGATGCGGATGGTGAGTTTGAAGATGAGCTAGGACCAACACCCTCCCCTG
AGGAAGTTATCTGCATCGGCGAACATCATCTCGTCCATCTGCCGCGTGAT
GAGTTGTTATACTCTTCCAACAGAGTTGCTCGCGTGCTTTGTGACGAGAA
CAACAGCTGTGCTACACCGGGACATATCGTCATGTACAATGACAAGCCAA
TGATGATGAGCAGTTACTGTGCAAAGACGAGCTGTGCTCCAAAGATCATG
AAGGTGAATAGTCCTCGTTACCGACGTGCCGCCAGAGTTGATTCTCATAC
CGGCGGACTCAGCTTCACTGCATTTGCGGCAAGGTATGAGACAACCGCTG
AGGAACATCTGCTGCGCTCATTTGTACGCATGGGATTGTAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:155407..157047-

>Ggra3451.t1 ID=Ggra3451.t1|Name=Ggra3451.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1452bp|location=Sequence derived from alignment at tig00000059_pilon:155407..157047- (Gracilaria gracilis GNS1m male)
ATGTATTCCCGGATCTCCCTCCTTCTCCTCCTTCTTCTCCCTGTCGCTGT
CGCGTTCCCCGCACAGCCGTCTTTCAACGTGCTCCACCCCCGTCACATCC
ACCAGACCTTCCTTCAACTCAAGGCGCGTCGCATCCGTCATGCAACCGTC
AAGTTCGCCTCCAAAGTGCTGTCAGCAGATGCTCAGCTCACCGTCTCGGC
CCGTCTCGGCCTGGCCTTCGAGCCCTGTTCCGCCTCGGATGAGTGTCAGG
CAGAGCGATCGTGCGTGCAACTGGCCGGCGACACCTCCGGTCCCGTCGAG
CTCGCTGACTGTGATGCCGGCCTTTGCTTCTGTGCTGACATGGACGGATG
CTCGTCTGTAGATGATTGTCTGACCGGAGAGAGCTGTGCCCCAGGTGGCA
CATGTGTGTCCAACTCCTTTGTCCCGGGTGCTGCCCCGGCCGATGAAGTG
GACCCTACGTTGGGACTCAACTTGGATCCGTGTGAATCTATCGCAGATTG
CCAAAACCCTCGTAACTGCGTTCAGTTTGTAGGCGGAGACTTCGGTCAGT
GTGCCGGGCCCAACTGCTTCTGTGTCCGACGCGATCCCAGCTGTACCTCC
ACGTCCGAGTGCTCGCAGGGTGAATCGTGTACGCAGAGAGAGGGATCAAA
TAATGCAATTTGCATTTCCGAGACCGCTATCATTAACGGCGAAGCAACCG
AGGAGGAGATCGATGAGATTCCTGACACTGCACCTGAGCTTCCGCCCATG
ACGGATATGACACCCGCGACCCCCGTCGCCACCGTTCCCGGTGATATGGA
CACTCCGGATGCCGAGGAAACCACGGACACAGACGACACCCCAGATGTGT
TGCCCGTTCCAGTCCCGGGTACCCCTGAGGAGCCTGCTACCACGGCGCCT
CTCACAACTGCAACCCCTGCCACAACGGCACCCCCTGCCCCTACGGTGCC
TGCCCCTACGGTGCCTGCCACTACGGTGCCTACCCCTACGGTGCCTGCCA
CTACGGTGCCTGCCACCACGGAAGGGGACCCGGAAGAAACTGAACCGGAA
CAAGCTGACAGGGAGCCTGTTGTCGTTTTGCCAGGTGCTGATGGTGCTTC
GGTGTCGCCGGACACTGAGGAAGGAGAAGAGGTTGTGCCGTCAGATACCG
TTGTCGATGCAGGTCCGACCGAGGAGATTATGGGAGAGGATGGTGAGGTT
ACTGCCACCCCTGGTGAAGAGATTATTGATCCGGACGTTACGGTCACCCC
TGATGCGGATGGTGAGTTTGAAGATGAGCTAGGACCAACACCCTCCCCTG
AGGAAATCATGAAGGTGAATAGTCCTCGTTACCGACGTGCCGCCAGAGTT
GATTCTCATACCGGCGGACTCAGCTTCACTGCATTTGCGGCAAGGTATGA
GACAACCGCTGAGGAACATCTGCTGCGCTCATTTGTACGCATGGGATTGT
AA
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