Ggra3449.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3449.t1
Unique Name	Ggra3449.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	616

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:150404..152251 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3449	Ggra3449	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 150404..152251 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3449.t1.stop1	Ggra3449.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 150404..150406 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3449.t1.CDS1	Ggra3449.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 150404..152251 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3449.t1.exon1	Ggra3449.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 150404..152251 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3449.t1.start1	Ggra3449.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 152249..152251 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3449.t1	Ggra3449.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 150404..152251 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:150404..152251-
coding sequence from alignment at tig00000059_pilon:150404..152251-

mRNA sequence

>Ggra3449.t1 ID=Ggra3449.t1|Name=Ggra3449.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=616bp
MESALLQFLPSARRVSADSSQSYDTAASSHNGALPQAPRPSSDPVLMARL
TALNLSSVPPPRTPTKHPFANNSPTSPLSSHSPSLLRRFSSCHASTSAAS
DKPLSMSSSSNSAMHHLPPLSPLSSMYDPNSRSASASEEDASCSSSTSSD
TEPPSLVHARSMCEHGLRRSLLRGEAVNGAGVNALPALHQHHAPHMQTPF
RKALSQRIPTSAANLPAALRHRFSLDHPSDPAVVAAVAAAAPHDGLRARS
ESLTRNFDMPRGKVQHLPPCVTRPATPSRLPRPKVFIRQNSTRSSVVDAA
AVKHVPSACGGDHLEPQLVPREVPFTPSQHFAMAYEQQQQREQESALVAS
SQFSAKITNVAEEHMYFSDEDEFDSQLIDPTKSPLTHNSPSDVLSTKVRR
AVSALRSISFQSNQVEDFDTAWGQTLSVSQEKHNPSFASLASAKWRRACG
KVSNRANGKQFECYSENDACSLRSSASNFSSQRDRSANGHNHIRGFAAMR
MRANFAGPHKRSLWAGARRDRQQQQQQPHAVAAQLLVSGGGHGFLAASTD
MAEQRQALTPVSPSDAVDARNSTQRGSVDKYVEFIHASAQRETKGRFGPR
NFPSRVLRLFRRKWN*

spliced messenger RNA

>Ggra3449.t1 ID=Ggra3449.t1|Name=Ggra3449.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000059_pilon:150404..152251- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCCGCCTTGCTGCAGTTCCTGCCCTCGGCGCGCCGCGTCAGCGC
CGATTCGTCACAGTCGTACGACACCGCTGCGTCGTCGCACAACGGCGCGC
TGCCGCAAGCGCCGCGTCCGTCTTCCGACCCCGTACTCATGGCGCGTCTC
ACCGCGCTCAACCTCAGTTCCGTGCCACCGCCGCGCACGCCCACCAAGCA
CCCGTTCGCCAACAACTCGCCCACGTCGCCGCTGTCGTCGCACTCGCCCT
CGCTGCTGCGTCGATTCAGCTCGTGTCATGCTTCTACCTCCGCCGCCTCC
GACAAGCCTCTCTCCATGTCGTCGTCGTCGAACAGTGCCATGCACCACCT
CCCTCCGCTCAGCCCGCTTTCGTCCATGTACGATCCCAACTCGCGCTCCG
CCTCGGCCTCCGAGGAGGATGCGTCCTGTTCGTCCTCCACTTCGTCTGAC
ACCGAGCCGCCATCGCTCGTGCACGCCCGATCCATGTGCGAGCACGGTCT
CCGTCGCAGCCTTCTGCGCGGCGAGGCCGTCAACGGCGCCGGTGTCAACG
CGCTGCCTGCGCTGCACCAACATCACGCGCCGCACATGCAGACGCCGTTC
CGAAAGGCGCTCTCTCAGCGAATTCCTACTTCGGCCGCCAATCTACCTGC
TGCGCTACGTCATCGCTTCTCGCTGGATCATCCATCCGATCCCGCTGTCG
TCGCTGCTGTTGCCGCTGCTGCTCCGCATGACGGTCTGCGCGCGCGCTCC
GAGTCGCTGACGCGCAACTTTGACATGCCGCGTGGAAAGGTGCAGCATCT
ACCGCCGTGTGTCACACGCCCGGCCACGCCGTCGCGTCTACCGCGTCCAA
AGGTGTTTATTCGCCAAAACTCTACGCGCTCGTCCGTCGTGGACGCCGCC
GCCGTCAAGCACGTCCCCAGCGCGTGCGGCGGCGACCATCTAGAGCCGCA
GCTCGTGCCCCGTGAAGTGCCGTTCACGCCGTCGCAGCACTTTGCCATGG
CATATGAGCAGCAACAGCAGCGGGAGCAGGAGAGCGCACTGGTGGCGAGT
AGCCAATTTAGCGCGAAAATCACCAACGTGGCCGAGGAGCACATGTACTT
TTCGGATGAAGATGAGTTTGATTCGCAGCTGATAGACCCAACCAAGTCGC
CGCTCACCCACAACTCACCAAGTGACGTGCTGTCCACCAAGGTGCGCCGC
GCCGTAAGCGCGCTGCGCAGCATCTCGTTCCAGTCCAACCAGGTGGAGGA
CTTTGACACCGCGTGGGGCCAGACGCTGTCGGTGTCGCAGGAGAAGCACA
ACCCTTCGTTCGCCAGTCTGGCGTCCGCCAAGTGGCGCCGCGCGTGCGGC
AAGGTCTCCAACCGCGCCAATGGCAAGCAATTCGAATGCTACAGTGAGAA
TGACGCGTGCAGTCTGCGTTCCAGCGCTTCCAACTTCTCCTCTCAGCGCG
ACCGCTCGGCCAATGGACACAACCACATTCGCGGCTTCGCCGCCATGAGA
ATGCGCGCCAATTTTGCTGGCCCCCACAAGCGCTCCCTCTGGGCCGGAGC
ACGTAGAGATAGACAGCAGCAGCAGCAGCAGCCGCATGCCGTCGCGGCTC
AGCTGCTCGTGTCCGGCGGTGGACACGGCTTTCTGGCTGCGTCCACCGAC
ATGGCTGAACAGCGACAGGCGCTGACCCCCGTGTCCCCGTCGGATGCCGT
CGATGCAAGGAACTCCACGCAGAGAGGCTCGGTCGATAAGTATGTCGAGT
TCATTCATGCGTCTGCACAACGAGAGACTAAGGGTAGGTTTGGTCCCCGC
AACTTTCCAAGTCGCGTTCTCAGGCTGTTCAGAAGAAAATGGAACTAG

protein sequence of Ggra3449.t1

>Ggra3449.t1 ID=Ggra3449.t1|Name=Ggra3449.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=616bp
MESALLQFLPSARRVSADSSQSYDTAASSHNGALPQAPRPSSDPVLMARL
TALNLSSVPPPRTPTKHPFANNSPTSPLSSHSPSLLRRFSSCHASTSAAS
DKPLSMSSSSNSAMHHLPPLSPLSSMYDPNSRSASASEEDASCSSSTSSD
TEPPSLVHARSMCEHGLRRSLLRGEAVNGAGVNALPALHQHHAPHMQTPF
RKALSQRIPTSAANLPAALRHRFSLDHPSDPAVVAAVAAAAPHDGLRARS
ESLTRNFDMPRGKVQHLPPCVTRPATPSRLPRPKVFIRQNSTRSSVVDAA
AVKHVPSACGGDHLEPQLVPREVPFTPSQHFAMAYEQQQQREQESALVAS
SQFSAKITNVAEEHMYFSDEDEFDSQLIDPTKSPLTHNSPSDVLSTKVRR
AVSALRSISFQSNQVEDFDTAWGQTLSVSQEKHNPSFASLASAKWRRACG
KVSNRANGKQFECYSENDACSLRSSASNFSSQRDRSANGHNHIRGFAAMR
MRANFAGPHKRSLWAGARRDRQQQQQQPHAVAAQLLVSGGGHGFLAASTD
MAEQRQALTPVSPSDAVDARNSTQRGSVDKYVEFIHASAQRETKGRFGPR
NFPSRVLRLFRRKWN*

mRNA from alignment at tig00000059_pilon:150404..152251-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3449.t1 ID=Ggra3449.t1|Name=Ggra3449.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000059_pilon:150404..152251- (Gracilaria gracilis GNS1m male)
ATGGAATCCGCCTTGCTGCAGTTCCTGCCCTCGGCGCGCCGCGTCAGCGC
CGATTCGTCACAGTCGTACGACACCGCTGCGTCGTCGCACAACGGCGCGC
TGCCGCAAGCGCCGCGTCCGTCTTCCGACCCCGTACTCATGGCGCGTCTC
ACCGCGCTCAACCTCAGTTCCGTGCCACCGCCGCGCACGCCCACCAAGCA
CCCGTTCGCCAACAACTCGCCCACGTCGCCGCTGTCGTCGCACTCGCCCT
CGCTGCTGCGTCGATTCAGCTCGTGTCATGCTTCTACCTCCGCCGCCTCC
GACAAGCCTCTCTCCATGTCGTCGTCGTCGAACAGTGCCATGCACCACCT
CCCTCCGCTCAGCCCGCTTTCGTCCATGTACGATCCCAACTCGCGCTCCG
CCTCGGCCTCCGAGGAGGATGCGTCCTGTTCGTCCTCCACTTCGTCTGAC
ACCGAGCCGCCATCGCTCGTGCACGCCCGATCCATGTGCGAGCACGGTCT
CCGTCGCAGCCTTCTGCGCGGCGAGGCCGTCAACGGCGCCGGTGTCAACG
CGCTGCCTGCGCTGCACCAACATCACGCGCCGCACATGCAGACGCCGTTC
CGAAAGGCGCTCTCTCAGCGAATTCCTACTTCGGCCGCCAATCTACCTGC
TGCGCTACGTCATCGCTTCTCGCTGGATCATCCATCCGATCCCGCTGTCG
TCGCTGCTGTTGCCGCTGCTGCTCCGCATGACGGTCTGCGCGCGCGCTCC
GAGTCGCTGACGCGCAACTTTGACATGCCGCGTGGAAAGGTGCAGCATCT
ACCGCCGTGTGTCACACGCCCGGCCACGCCGTCGCGTCTACCGCGTCCAA
AGGTGTTTATTCGCCAAAACTCTACGCGCTCGTCCGTCGTGGACGCCGCC
GCCGTCAAGCACGTCCCCAGCGCGTGCGGCGGCGACCATCTAGAGCCGCA
GCTCGTGCCCCGTGAAGTGCCGTTCACGCCGTCGCAGCACTTTGCCATGG
CATATGAGCAGCAACAGCAGCGGGAGCAGGAGAGCGCACTGGTGGCGAGT
AGCCAATTTAGCGCGAAAATCACCAACGTGGCCGAGGAGCACATGTACTT
TTCGGATGAAGATGAGTTTGATTCGCAGCTGATAGACCCAACCAAGTCGC
CGCTCACCCACAACTCACCAAGTGACGTGCTGTCCACCAAGGTGCGCCGC
GCCGTAAGCGCGCTGCGCAGCATCTCGTTCCAGTCCAACCAGGTGGAGGA
CTTTGACACCGCGTGGGGCCAGACGCTGTCGGTGTCGCAGGAGAAGCACA
ACCCTTCGTTCGCCAGTCTGGCGTCCGCCAAGTGGCGCCGCGCGTGCGGC
AAGGTCTCCAACCGCGCCAATGGCAAGCAATTCGAATGCTACAGTGAGAA
TGACGCGTGCAGTCTGCGTTCCAGCGCTTCCAACTTCTCCTCTCAGCGCG
ACCGCTCGGCCAATGGACACAACCACATTCGCGGCTTCGCCGCCATGAGA
ATGCGCGCCAATTTTGCTGGCCCCCACAAGCGCTCCCTCTGGGCCGGAGC
ACGTAGAGATAGACAGCAGCAGCAGCAGCAGCCGCATGCCGTCGCGGCTC
AGCTGCTCGTGTCCGGCGGTGGACACGGCTTTCTGGCTGCGTCCACCGAC
ATGGCTGAACAGCGACAGGCGCTGACCCCCGTGTCCCCGTCGGATGCCGT
CGATGCAAGGAACTCCACGCAGAGAGGCTCGGTCGATAAGTATGTCGAGT
TCATTCATGCGTCTGCACAACGAGAGACTAAGGGTAGGTTTGGTCCCCGC
AACTTTCCAAGTCGCGTTCTCAGGCTGTTCAGAAGAAAATGGAACTAG

Coding sequence (CDS) from alignment at tig00000059_pilon:150404..152251-

>Ggra3449.t1 ID=Ggra3449.t1|Name=Ggra3449.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1848bp|location=Sequence derived from alignment at tig00000059_pilon:150404..152251- (Gracilaria gracilis GNS1m male)
ATGGAATCCGCCTTGCTGCAGTTCCTGCCCTCGGCGCGCCGCGTCAGCGC
CGATTCGTCACAGTCGTACGACACCGCTGCGTCGTCGCACAACGGCGCGC
TGCCGCAAGCGCCGCGTCCGTCTTCCGACCCCGTACTCATGGCGCGTCTC
ACCGCGCTCAACCTCAGTTCCGTGCCACCGCCGCGCACGCCCACCAAGCA
CCCGTTCGCCAACAACTCGCCCACGTCGCCGCTGTCGTCGCACTCGCCCT
CGCTGCTGCGTCGATTCAGCTCGTGTCATGCTTCTACCTCCGCCGCCTCC
GACAAGCCTCTCTCCATGTCGTCGTCGTCGAACAGTGCCATGCACCACCT
CCCTCCGCTCAGCCCGCTTTCGTCCATGTACGATCCCAACTCGCGCTCCG
CCTCGGCCTCCGAGGAGGATGCGTCCTGTTCGTCCTCCACTTCGTCTGAC
ACCGAGCCGCCATCGCTCGTGCACGCCCGATCCATGTGCGAGCACGGTCT
CCGTCGCAGCCTTCTGCGCGGCGAGGCCGTCAACGGCGCCGGTGTCAACG
CGCTGCCTGCGCTGCACCAACATCACGCGCCGCACATGCAGACGCCGTTC
CGAAAGGCGCTCTCTCAGCGAATTCCTACTTCGGCCGCCAATCTACCTGC
TGCGCTACGTCATCGCTTCTCGCTGGATCATCCATCCGATCCCGCTGTCG
TCGCTGCTGTTGCCGCTGCTGCTCCGCATGACGGTCTGCGCGCGCGCTCC
GAGTCGCTGACGCGCAACTTTGACATGCCGCGTGGAAAGGTGCAGCATCT
ACCGCCGTGTGTCACACGCCCGGCCACGCCGTCGCGTCTACCGCGTCCAA
AGGTGTTTATTCGCCAAAACTCTACGCGCTCGTCCGTCGTGGACGCCGCC
GCCGTCAAGCACGTCCCCAGCGCGTGCGGCGGCGACCATCTAGAGCCGCA
GCTCGTGCCCCGTGAAGTGCCGTTCACGCCGTCGCAGCACTTTGCCATGG
CATATGAGCAGCAACAGCAGCGGGAGCAGGAGAGCGCACTGGTGGCGAGT
AGCCAATTTAGCGCGAAAATCACCAACGTGGCCGAGGAGCACATGTACTT
TTCGGATGAAGATGAGTTTGATTCGCAGCTGATAGACCCAACCAAGTCGC
CGCTCACCCACAACTCACCAAGTGACGTGCTGTCCACCAAGGTGCGCCGC
GCCGTAAGCGCGCTGCGCAGCATCTCGTTCCAGTCCAACCAGGTGGAGGA
CTTTGACACCGCGTGGGGCCAGACGCTGTCGGTGTCGCAGGAGAAGCACA
ACCCTTCGTTCGCCAGTCTGGCGTCCGCCAAGTGGCGCCGCGCGTGCGGC
AAGGTCTCCAACCGCGCCAATGGCAAGCAATTCGAATGCTACAGTGAGAA
TGACGCGTGCAGTCTGCGTTCCAGCGCTTCCAACTTCTCCTCTCAGCGCG
ACCGCTCGGCCAATGGACACAACCACATTCGCGGCTTCGCCGCCATGAGA
ATGCGCGCCAATTTTGCTGGCCCCCACAAGCGCTCCCTCTGGGCCGGAGC
ACGTAGAGATAGACAGCAGCAGCAGCAGCAGCCGCATGCCGTCGCGGCTC
AGCTGCTCGTGTCCGGCGGTGGACACGGCTTTCTGGCTGCGTCCACCGAC
ATGGCTGAACAGCGACAGGCGCTGACCCCCGTGTCCCCGTCGGATGCCGT
CGATGCAAGGAACTCCACGCAGAGAGGCTCGGTCGATAAGTATGTCGAGT
TCATTCATGCGTCTGCACAACGAGAGACTAAGGGTAGGTTTGGTCCCCGC
AACTTTCCAAGTCGCGTTCTCAGGCTGTTCAGAAGAAAATGGAACTAG